Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.69769 * 2 1 4 4 C 1.53066 * 109.67395 * 120.51469 * 2 1 3 5 5 C 1.50179 * 109.88807 * 168.63528 * 4 2 1 6 6 O 1.21279 * 118.24330 * 162.39899 * 5 4 2 7 7 N 1.33347 * 123.50914 * 342.41497 * 5 4 2 8 8 C 1.45760 * 124.10838 * 2.22751 * 7 5 4 9 9 H 1.08998 * 109.12894 * 101.12740 * 8 7 5 10 10 C 1.50696 * 109.30103 * 220.61092 * 8 7 5 11 11 O 1.21288 * 120.00151 * 21.03622 * 10 8 7 12 12 N 1.34777 * 119.99927 * 201.03178 * 10 8 7 13 13 C 1.46500 * 119.99965 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.46917 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.51366 * 60.10549 * 14 13 12 16 16 C 1.53305 * 109.51256 * 180.25379 * 14 13 12 17 17 N 1.47150 * 108.38569 * 172.22351 * 16 14 13 18 18 C 1.36934 * 120.97786 * 129.48380 * 17 16 14 19 19 H 1.08006 * 119.99898 * 206.22356 * 18 17 16 20 20 C 1.38816 * 120.00118 * 26.23617 * 18 17 16 21 21 N 1.31614 * 119.99810 * 16.89695 * 20 18 17 22 22 Si 1.86793 * 120.00020 * 196.90486 * 20 18 17 23 23 H 1.48499 * 109.47229 * 89.99630 * 22 20 18 24 24 H 1.48497 * 109.47109 * 209.99781 * 22 20 18 25 25 H 1.48500 * 109.47222 * 329.99558 * 22 20 18 26 26 C 1.47154 * 118.03868 * 309.47122 * 17 16 14 27 27 C 1.53298 * 108.38549 * 50.53047 * 26 17 16 28 28 O 1.42959 * 109.51625 * 299.99956 * 14 13 12 29 29 C 1.52917 * 110.48496 * 340.92403 * 8 7 5 30 30 H 1.09005 * 109.47211 * 180.51991 * 1 2 3 31 31 H 1.09005 * 109.47103 * 300.51442 * 1 2 3 32 32 H 1.08994 * 109.47450 * 60.51400 * 1 2 3 33 33 H 1.08998 * 109.40366 * 288.76420 * 4 2 1 34 34 H 1.09003 * 109.40272 * 48.50570 * 4 2 1 35 35 H 0.97002 * 117.94970 * 182.22386 * 7 5 4 36 36 H 0.97002 * 119.99880 * 0.02562 * 12 10 8 37 37 H 1.09002 * 109.47203 * 60.00261 * 13 12 10 38 38 H 1.08999 * 109.47500 * 300.00425 * 13 12 10 39 39 H 1.09002 * 109.47219 * 299.89492 * 15 14 13 40 40 H 1.09000 * 109.47474 * 59.89612 * 15 14 13 41 41 H 1.09002 * 109.47420 * 179.89835 * 15 14 13 42 42 H 1.08992 * 109.68359 * 291.95523 * 16 14 13 43 43 H 1.08997 * 109.67477 * 52.46822 * 16 14 13 44 44 H 0.97000 * 119.99736 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.67823 * 290.80574 * 26 17 16 46 46 H 1.09000 * 109.67854 * 170.25288 * 26 17 16 47 47 H 1.08998 * 109.51115 * 187.77585 * 27 26 17 48 48 H 1.09008 * 109.50859 * 67.62226 * 27 26 17 49 49 H 1.09000 * 109.60719 * 170.50982 * 29 8 7 50 50 H 1.09006 * 109.60537 * 290.99063 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0453 -0.7318 1.2417 5 6 3.5210 -0.9792 1.1132 6 8 4.1475 -1.2470 2.1166 7 7 4.1794 -0.9197 -0.0448 8 6 3.5642 -0.5638 -1.3174 9 1 3.8000 0.4746 -1.5501 10 6 4.1129 -1.4543 -2.4022 11 8 4.6208 -2.5176 -2.1149 12 7 4.0391 -1.0693 -3.6917 13 6 4.5730 -1.9348 -4.7463 14 6 4.3648 -1.2679 -6.1074 15 6 5.0959 0.0758 -6.1354 16 6 4.9175 -2.1757 -7.2123 17 7 4.5397 -1.6044 -8.5147 18 6 5.4737 -1.4116 -9.4973 19 1 5.3214 -0.6466 -10.2445 20 6 6.6161 -2.1994 -9.5334 21 7 6.6597 -3.3267 -8.8555 22 14 8.0915 -1.6594 -10.5438 23 1 8.9908 -0.8298 -9.7023 24 1 8.8275 -2.8565 -11.0238 25 1 7.6290 -0.8628 -11.7085 26 6 3.1287 -1.2467 -8.7300 27 6 2.6632 -0.3842 -7.5513 28 8 2.9681 -1.0563 -6.3269 29 6 2.0462 -0.7331 -1.2439 30 1 -0.3634 -1.0277 0.0093 31 1 -0.3633 0.5218 0.8854 32 1 -0.3634 0.5058 -0.8945 33 1 1.8559 -0.1229 2.1256 34 1 1.5258 -1.6848 1.3420 35 1 5.1272 -1.1262 -0.0401 36 1 3.6332 -0.2188 -3.9215 37 1 4.0538 -2.8930 -4.7275 38 1 5.6382 -2.0955 -4.5799 39 1 4.6992 0.7216 -5.3520 40 1 6.1607 -0.0863 -5.9680 41 1 4.9486 0.5495 -7.1060 42 1 6.0034 -2.2281 -7.1354 43 1 4.4938 -3.1750 -7.1124 44 1 7.4581 -3.8770 -8.8804 45 1 2.5245 -2.1522 -8.7834 46 1 3.0302 -0.6837 -9.6582 47 1 1.5873 -0.2234 -7.6202 48 1 3.1781 0.5763 -7.5773 49 1 1.5871 -0.3075 -2.1362 50 1 1.7994 -1.7925 -1.1728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107951172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -126.200438 kcal Electronic energy + Delta-G solvation = -30938.613673 eV Core-core repulsion = 26772.064520 eV Total energy + Delta-G solvation = -4166.549153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.90565 -40.87568 -40.04432 -37.73463 -36.56994 -35.95372 -34.99015 -33.33590 -33.17597 -31.04589 -29.54896 -28.79918 -28.05018 -27.37053 -25.35554 -24.94689 -22.99524 -22.43468 -21.58610 -20.31824 -20.21170 -19.04485 -18.70433 -18.13614 -17.60066 -17.31893 -16.91676 -16.44809 -16.30937 -16.18410 -15.85120 -15.59209 -15.42433 -15.32159 -15.15811 -14.86066 -14.61265 -14.42786 -14.28739 -13.91746 -13.50076 -13.34947 -13.16759 -12.96484 -12.90839 -12.79601 -12.75584 -12.51259 -12.44096 -12.42513 -12.12821 -11.93757 -11.88550 -11.83470 -11.62867 -11.25994 -11.10117 -10.81956 -10.72975 -10.48931 -10.21710 -10.13138 -8.71340 -7.89746 -5.36314 1.43759 1.45694 1.47444 1.48904 1.55833 1.91923 2.36312 2.48404 2.80417 3.24625 3.46684 3.52283 3.54983 3.63314 3.74483 3.92013 4.00915 4.04105 4.13279 4.18841 4.44796 4.46640 4.50020 4.58992 4.65944 4.69523 4.70325 4.74409 4.80104 4.82426 4.86199 4.99738 4.99948 5.06497 5.15130 5.17353 5.23520 5.31784 5.35269 5.39707 5.50748 5.55328 5.61260 5.62317 6.22362 6.29782 6.38770 6.48691 7.07485 7.08308 7.16140 7.77237 8.30367 9.15554 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.002553 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.120116 B =10963.620918 C =11880.473079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.101 0.899 4 C -0.128 4.128 5 C 0.519 3.481 6 O -0.609 6.609 7 N -0.701 5.701 8 C 0.134 3.866 9 H 0.139 0.861 10 C 0.498 3.502 11 O -0.581 6.581 12 N -0.693 5.693 13 C 0.149 3.851 14 C 0.096 3.904 15 C -0.154 4.154 16 C 0.166 3.834 17 N -0.607 5.607 18 C -0.257 4.257 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.266 1.266 26 C 0.100 3.900 27 C 0.054 3.946 28 O -0.381 6.381 29 C -0.123 4.123 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.396 0.604 36 H 0.419 0.581 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.064 0.936 43 H -0.010 1.010 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.063 0.937 49 H 0.120 0.880 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.221 13.892 14.200 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.119 0.881 4 C -0.167 4.167 5 C 0.308 3.692 6 O -0.491 6.491 7 N -0.351 5.351 8 C 0.025 3.975 9 H 0.156 0.844 10 C 0.284 3.716 11 O -0.461 6.461 12 N -0.346 5.346 13 C 0.024 3.976 14 C 0.054 3.946 15 C -0.211 4.211 16 C 0.039 3.961 17 N -0.331 5.331 18 C -0.386 4.386 19 H 0.092 0.908 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.191 1.191 26 C -0.026 4.026 27 C -0.023 4.023 28 O -0.300 6.300 29 C -0.161 4.161 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.008 0.992 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.089 0.911 47 H 0.138 0.862 48 H 0.081 0.919 49 H 0.138 0.862 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.827 12.905 14.978 24.126 hybrid contribution 1.788 -0.631 -1.286 2.291 sum -12.039 12.274 13.692 21.978 Atomic orbital electron populations 1.21798 0.92381 1.02566 1.03411 1.21234 0.97729 0.99998 0.91117 0.88118 1.21834 0.88560 1.04343 1.02004 1.20893 0.91859 0.74699 0.81713 1.90743 1.69774 1.51657 1.36928 1.45394 1.13511 1.69315 1.06851 1.21113 0.95954 0.99367 0.81016 0.84377 1.21374 0.78821 0.87030 0.84364 1.90758 1.46526 1.25575 1.83225 1.45692 1.60434 1.23737 1.04749 1.21021 0.98779 0.93365 0.84403 1.22146 0.82795 0.96280 0.93344 1.22125 1.00043 0.96079 1.02884 1.21060 0.99326 0.91803 0.83867 1.44258 1.03507 1.74218 1.11143 1.19512 0.99435 1.12139 1.07556 0.90817 1.25774 1.02706 0.95068 1.01030 1.70180 1.28429 1.12539 1.47132 0.85300 0.79779 0.76816 0.78786 1.21054 1.22723 1.19102 1.21849 0.85099 0.97040 0.98569 1.23104 1.01454 0.94561 0.83190 1.87812 1.22683 1.79505 1.40036 1.22052 0.89670 1.02517 1.01846 0.92668 0.91239 0.90810 0.86740 0.87626 0.76856 0.74229 0.92807 0.91154 0.89743 0.92905 0.92060 0.91730 0.99196 0.94155 0.97108 0.91094 0.86206 0.91917 0.86159 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.20 71.98 0.66 -0.08 16 2 C -0.08 -0.62 2.80 -10.66 -0.03 -0.65 16 3 H 0.10 0.48 8.13 -2.39 -0.02 0.46 16 4 C -0.13 -1.66 5.35 29.71 0.16 -1.50 16 5 C 0.52 11.57 7.71 87.72 0.68 12.25 16 6 O -0.61 -19.53 17.78 -3.03 -0.05 -19.58 16 7 N -0.70 -14.25 4.79 -450.24 -2.16 -16.40 16 8 C 0.13 1.95 3.45 44.36 0.15 2.10 16 9 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 10 C 0.50 11.64 6.98 87.66 0.61 12.25 16 11 O -0.58 -19.85 16.40 -3.05 -0.05 -19.90 16 12 N -0.69 -15.15 5.15 -463.06 -2.39 -17.53 16 13 C 0.15 4.64 4.82 86.38 0.42 5.06 16 14 C 0.10 3.18 0.76 -10.69 -0.01 3.17 16 15 C -0.15 -4.44 7.92 71.98 0.57 -3.87 16 16 C 0.17 7.64 4.11 86.36 0.36 8.00 16 17 N -0.61 -28.55 2.57 -697.53 -1.79 -30.35 16 18 C -0.26 -13.28 9.65 84.03 0.81 -12.47 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 21 N -0.94 -54.41 11.14 21.65 0.24 -54.16 16 22 Si 0.96 43.41 29.59 68.60 2.03 45.44 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.10 3.76 6.74 86.35 0.58 4.34 16 27 C 0.05 1.52 6.60 72.08 0.48 2.00 16 28 O -0.38 -11.66 9.97 -148.98 -1.49 -13.14 16 29 C -0.12 -1.28 4.58 30.68 0.14 -1.14 16 30 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.40 9.33 8.46 -92.71 -0.78 8.55 16 36 H 0.42 6.46 7.20 -92.71 -0.67 5.80 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 1.71 6.87 -2.39 -0.02 1.70 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.96 6.12 -2.39 -0.01 1.95 16 42 H 0.06 3.37 6.14 -2.39 -0.01 3.36 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.07 2.50 7.96 -2.39 -0.02 2.49 16 47 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.06 1.64 6.25 -2.38 -0.01 1.62 16 49 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 Total: -1.00 -76.78 391.56 -0.15 -76.93 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.50 Total: 21.54 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 5.99 Total: 27.16 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.09 Total: -118.45 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.59 Total: -52.62 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.78 -0.15 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.268 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds