Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00010 * 2 1 4 4 N 1.34776 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00175 * 179.97438 * 4 2 1 6 6 C 1.50695 * 109.47438 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99970 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00223 * 179.97438 * 6 5 4 9 9 C 1.47160 * 120.98721 * 0.02562 * 8 6 5 10 10 C 1.53299 * 108.37574 * 129.42998 * 9 8 6 11 11 H 1.09001 * 109.51058 * 292.40950 * 10 9 8 12 12 C 1.53001 * 109.51029 * 172.26846 * 10 9 8 13 13 O 1.42965 * 109.23470 * 52.33562 * 10 9 8 14 14 C 1.42897 * 114.20084 * 297.51434 * 13 10 9 15 15 C 1.52995 * 109.55132 * 182.24323 * 14 13 10 16 16 C 1.53190 * 109.35145 * 59.06231 * 15 14 13 17 17 N 1.46932 * 108.77038 * 54.58068 * 16 15 14 18 18 C 1.36934 * 120.64335 * 126.29555 * 17 16 15 19 19 H 1.08008 * 120.00006 * 331.85396 * 18 17 16 20 20 C 1.38808 * 120.00445 * 151.85873 * 18 17 16 21 21 N 1.31629 * 119.99741 * 343.06544 * 20 18 17 22 22 Si 1.86795 * 120.00578 * 163.06654 * 20 18 17 23 23 H 1.48499 * 109.47102 * 60.00058 * 22 20 18 24 24 H 1.48501 * 109.47255 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47221 * 299.99919 * 22 20 18 26 26 C 1.46925 * 118.71657 * 306.31940 * 17 16 15 27 27 C 1.52977 * 109.56501 * 302.55145 * 14 13 10 28 28 C 1.47151 * 120.99138 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47136 * 240.00585 * 1 2 3 30 30 H 1.08999 * 109.46744 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47208 * 120.00473 * 1 2 3 32 32 H 0.97000 * 119.99691 * 0.02562 * 4 2 1 33 33 H 1.09006 * 109.46914 * 59.99966 * 5 4 2 34 34 H 1.09005 * 109.47378 * 300.00779 * 5 4 2 35 35 H 1.09000 * 109.68161 * 249.15051 * 9 8 6 36 36 H 1.09002 * 109.68519 * 9.70373 * 9 8 6 37 37 H 1.08997 * 109.47338 * 59.98951 * 12 10 9 38 38 H 1.08997 * 109.47133 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.46880 * 299.99755 * 12 10 9 40 40 H 1.08998 * 109.49108 * 179.03024 * 15 14 13 41 41 H 1.09007 * 109.49003 * 299.09865 * 15 14 13 42 42 H 1.08998 * 109.59029 * 294.79423 * 16 15 14 43 43 H 1.08999 * 109.70459 * 174.43470 * 16 15 14 44 44 H 0.96995 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58290 * 293.88632 * 26 17 16 46 46 H 1.08992 * 109.70261 * 173.52640 * 26 17 16 47 47 H 1.09005 * 109.49478 * 60.89981 * 27 14 13 48 48 H 1.09000 * 109.48932 * 180.94349 * 27 14 13 49 49 H 1.09000 * 109.67851 * 350.20422 * 28 8 6 50 50 H 1.09004 * 109.67594 * 110.70514 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 8 3.3600 -3.5099 0.0001 8 7 5.4732 -2.8344 -0.0009 9 6 6.4487 -1.7326 -0.0015 10 6 7.4617 -1.9833 1.1214 11 1 6.9658 -1.8869 2.0873 12 6 8.5959 -0.9611 1.0240 13 8 7.9953 -3.3030 0.9883 14 6 7.0245 -4.3433 1.1191 15 6 7.7155 -5.7044 1.0153 16 6 8.7718 -5.8229 2.1185 17 7 8.1310 -5.5682 3.4160 18 6 8.2441 -6.4708 4.4395 19 1 8.3822 -7.5197 4.2217 20 6 8.1812 -6.0380 5.7568 21 7 8.3481 -4.7632 6.0394 22 14 7.8599 -7.2643 7.1287 23 1 8.9349 -8.2888 7.1387 24 1 7.8412 -6.5545 8.4329 25 1 6.5487 -7.9248 6.9052 26 6 7.3660 -4.3265 3.5938 27 6 6.3251 -4.2240 2.4744 28 6 5.9876 -4.2131 -0.0014 29 1 -0.3633 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6958 -2.0072 0.0005 33 1 4.0095 -0.6529 0.8895 34 1 4.0089 -0.6540 -0.8905 35 1 6.9648 -1.6998 -0.9610 36 1 5.9348 -0.7871 0.1719 37 1 8.1878 0.0449 1.1211 38 1 9.3156 -1.1397 1.8230 39 1 9.0923 -1.0601 0.0586 40 1 6.9768 -6.4972 1.1324 41 1 8.1956 -5.7952 0.0409 42 1 9.5601 -5.0892 1.9500 43 1 9.1987 -6.8258 2.1124 44 1 8.3037 -4.4607 6.9599 45 1 8.0405 -3.4716 3.5449 46 1 6.8628 -4.3401 4.5605 47 1 5.8165 -3.2619 2.5378 48 1 5.5968 -5.0280 2.5798 49 1 5.1684 -4.9106 0.1738 50 1 6.4552 -4.4301 -0.9618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111533870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -86.609817 kcal Electronic energy + Delta-G solvation = -31682.864304 eV Core-core repulsion = 27518.031930 eV Total energy + Delta-G solvation = -4164.832375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93730 -39.84817 -38.77606 -36.45976 -34.83031 -34.67630 -33.58872 -31.53586 -30.88491 -30.17889 -29.77376 -28.17178 -26.81226 -25.90841 -23.96425 -22.66072 -21.73878 -20.98672 -20.85495 -19.41386 -18.99872 -17.80000 -17.04426 -16.97763 -16.40210 -16.32237 -15.66211 -15.48662 -15.27877 -14.89160 -14.69317 -14.36194 -13.97991 -13.90884 -13.59562 -13.35974 -13.28268 -13.19998 -12.90809 -12.87123 -12.62319 -12.36016 -12.31334 -12.06169 -11.81548 -11.54171 -11.47590 -11.44755 -11.04040 -10.74371 -10.61178 -10.42057 -10.29647 -10.26805 -10.25486 -9.96409 -9.83745 -9.56730 -9.49324 -9.35245 -8.49452 -8.43551 -6.63558 -5.77172 -3.19134 2.27093 2.36365 2.46310 3.07893 3.39043 3.44769 3.46095 3.84148 4.09066 4.51132 4.52780 4.62534 4.80025 4.92293 4.94528 5.02272 5.05362 5.07020 5.09066 5.20867 5.28343 5.38312 5.44782 5.48220 5.51509 5.59130 5.59970 5.75063 5.80442 5.95550 6.00433 6.04839 6.14655 6.21847 6.29769 6.39199 6.41832 6.52195 6.64406 6.80740 7.05061 7.10894 7.19074 7.37203 7.54646 7.68204 7.80430 7.81475 7.90316 8.46923 9.23446 9.87199 10.44903 11.31365 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003131 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.722345 B = 8939.492153 C = 9712.977929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.719 5.719 5 C 0.100 3.900 6 C 0.512 3.488 7 O -0.539 6.539 8 N -0.603 5.603 9 C 0.074 3.926 10 C 0.070 3.930 11 H 0.071 0.929 12 C -0.142 4.142 13 O -0.354 6.354 14 C 0.118 3.882 15 C -0.117 4.117 16 C 0.151 3.849 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.181 3.819 27 C -0.160 4.160 28 C 0.089 3.911 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.022 0.978 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 8.738 -15.086 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.427 6.427 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.416 6.416 8 N -0.336 5.336 9 C -0.049 4.049 10 C 0.012 3.988 11 H 0.089 0.911 12 C -0.199 4.199 13 O -0.273 6.273 14 C 0.078 3.922 15 C -0.157 4.157 16 C 0.025 3.975 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.055 3.945 27 C -0.200 4.200 28 C -0.033 4.033 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.160 9.024 -14.942 19.713 hybrid contribution -0.617 -0.872 0.779 1.322 sum -9.777 8.152 -14.163 19.043 Atomic orbital electron populations 1.21897 0.91066 1.05633 1.04590 1.20849 0.90824 0.82971 0.75343 1.90732 1.70888 1.31393 1.49678 1.45815 1.05937 1.10081 1.75719 1.21091 0.82436 0.94512 1.04726 1.20425 0.82312 0.91014 0.76331 1.90688 1.54503 1.45931 1.50484 1.48039 1.04960 1.08114 1.72482 1.22662 0.91422 0.89696 1.01121 1.22390 0.94411 0.84982 0.97059 0.91130 1.21701 0.98097 0.96697 1.03433 1.88024 1.33926 1.12718 1.92654 1.21725 0.87977 0.88948 0.93532 1.21993 1.00331 0.93045 1.00293 1.20789 0.92521 0.98681 0.85542 1.44011 1.56987 1.21338 1.08988 1.19146 1.45225 0.88679 0.85093 0.91756 1.25039 1.01021 0.96057 0.97546 1.70025 1.52605 1.13882 1.18213 0.86385 0.78421 0.80605 0.81447 1.20896 1.21675 1.21088 1.20623 0.90652 0.87898 0.95310 1.22715 1.00275 1.00389 0.96581 1.22522 0.98629 0.82377 0.99783 0.89110 0.88772 0.89238 0.74905 0.88241 0.88411 0.90142 0.89076 0.91212 0.90879 0.91886 0.90840 0.92200 0.95464 0.92863 0.93672 0.96029 0.89799 0.93401 0.91789 0.88251 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.32 36.01 0.37 -0.67 16 2 C 0.51 5.25 7.94 -10.99 -0.09 5.16 16 3 O -0.55 -7.75 17.09 5.56 0.09 -7.65 16 4 N -0.72 -7.13 5.53 -61.47 -0.34 -7.47 16 5 C 0.10 1.03 4.53 -5.20 -0.02 1.01 16 6 C 0.51 6.47 7.78 -10.99 -0.09 6.38 16 7 O -0.54 -8.25 15.14 5.56 0.08 -8.16 16 8 N -0.60 -7.52 2.52 -172.31 -0.43 -7.95 16 9 C 0.07 0.77 5.83 -3.53 -0.02 0.75 16 10 C 0.07 0.92 3.01 -26.58 -0.08 0.84 16 11 H 0.07 1.05 6.29 -51.93 -0.33 0.72 16 12 C -0.14 -1.54 9.57 37.16 0.36 -1.18 16 13 O -0.35 -5.78 8.65 -35.23 -0.30 -6.08 16 14 C 0.12 1.94 0.68 -90.52 -0.06 1.88 16 15 C -0.12 -1.98 5.10 -26.64 -0.14 -2.12 16 16 C 0.15 3.16 6.28 -3.71 -0.02 3.14 16 17 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 18 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 19 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 22 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.18 4.29 5.07 -3.71 -0.02 4.27 16 27 C -0.16 -3.06 4.32 -26.64 -0.12 -3.17 16 28 C 0.09 1.25 5.29 -3.57 -0.02 1.23 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.41 3.82 7.44 -40.82 -0.30 3.52 16 33 H 0.10 1.01 7.66 -51.93 -0.40 0.61 16 34 H 0.10 0.89 8.01 -51.93 -0.42 0.48 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.74 6.05 -51.93 -0.31 0.42 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.55 7.83 -51.93 -0.41 0.14 16 46 H 0.08 2.26 6.06 -51.93 -0.31 1.95 16 47 H 0.05 0.86 6.15 -51.93 -0.32 0.54 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.10 1.51 7.07 -51.93 -0.37 1.14 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -33.76 388.30 -8.33 -42.09 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.18 Total: 3.03 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.17 Total: 10.44 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.67 Total: -56.22 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.13 Total: -21.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.76 -8.33 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111533870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.522 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds