Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00010 * 2 1 4 4 N 1.34776 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00175 * 179.97438 * 4 2 1 6 6 C 1.50695 * 109.47438 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99970 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00223 * 179.97438 * 6 5 4 9 9 C 1.47160 * 120.98721 * 0.02562 * 8 6 5 10 10 C 1.53299 * 108.37574 * 129.42998 * 9 8 6 11 11 H 1.09001 * 109.51058 * 292.40950 * 10 9 8 12 12 C 1.53001 * 109.51029 * 172.26846 * 10 9 8 13 13 O 1.42965 * 109.23470 * 52.33562 * 10 9 8 14 14 C 1.42897 * 114.20084 * 297.51434 * 13 10 9 15 15 C 1.52995 * 109.55132 * 182.24323 * 14 13 10 16 16 C 1.53190 * 109.35145 * 59.06231 * 15 14 13 17 17 N 1.46932 * 108.77038 * 54.58068 * 16 15 14 18 18 C 1.36934 * 120.64335 * 126.29555 * 17 16 15 19 19 H 1.08008 * 120.00006 * 331.85396 * 18 17 16 20 20 C 1.38808 * 120.00445 * 151.85873 * 18 17 16 21 21 N 1.31629 * 119.99741 * 343.06544 * 20 18 17 22 22 Si 1.86795 * 120.00578 * 163.06654 * 20 18 17 23 23 H 1.48499 * 109.47102 * 60.00058 * 22 20 18 24 24 H 1.48501 * 109.47255 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47221 * 299.99919 * 22 20 18 26 26 C 1.46925 * 118.71657 * 306.31940 * 17 16 15 27 27 C 1.52977 * 109.56501 * 302.55145 * 14 13 10 28 28 C 1.47151 * 120.99138 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47136 * 240.00585 * 1 2 3 30 30 H 1.08999 * 109.46744 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47208 * 120.00473 * 1 2 3 32 32 H 0.97000 * 119.99691 * 0.02562 * 4 2 1 33 33 H 1.09006 * 109.46914 * 59.99966 * 5 4 2 34 34 H 1.09005 * 109.47378 * 300.00779 * 5 4 2 35 35 H 1.09000 * 109.68161 * 249.15051 * 9 8 6 36 36 H 1.09002 * 109.68519 * 9.70373 * 9 8 6 37 37 H 1.08997 * 109.47338 * 59.98951 * 12 10 9 38 38 H 1.08997 * 109.47133 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.46880 * 299.99755 * 12 10 9 40 40 H 1.08998 * 109.49108 * 179.03024 * 15 14 13 41 41 H 1.09007 * 109.49003 * 299.09865 * 15 14 13 42 42 H 1.08998 * 109.59029 * 294.79423 * 16 15 14 43 43 H 1.08999 * 109.70459 * 174.43470 * 16 15 14 44 44 H 0.96995 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58290 * 293.88632 * 26 17 16 46 46 H 1.08992 * 109.70261 * 173.52640 * 26 17 16 47 47 H 1.09005 * 109.49478 * 60.89981 * 27 14 13 48 48 H 1.09000 * 109.48932 * 180.94349 * 27 14 13 49 49 H 1.09000 * 109.67851 * 350.20422 * 28 8 6 50 50 H 1.09004 * 109.67594 * 110.70514 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 8 3.3600 -3.5099 0.0001 8 7 5.4732 -2.8344 -0.0009 9 6 6.4487 -1.7326 -0.0015 10 6 7.4617 -1.9833 1.1214 11 1 6.9658 -1.8869 2.0873 12 6 8.5959 -0.9611 1.0240 13 8 7.9953 -3.3030 0.9883 14 6 7.0245 -4.3433 1.1191 15 6 7.7155 -5.7044 1.0153 16 6 8.7718 -5.8229 2.1185 17 7 8.1310 -5.5682 3.4160 18 6 8.2441 -6.4708 4.4395 19 1 8.3822 -7.5197 4.2217 20 6 8.1812 -6.0380 5.7568 21 7 8.3481 -4.7632 6.0394 22 14 7.8599 -7.2643 7.1287 23 1 8.9349 -8.2888 7.1387 24 1 7.8412 -6.5545 8.4329 25 1 6.5487 -7.9248 6.9052 26 6 7.3660 -4.3265 3.5938 27 6 6.3251 -4.2240 2.4744 28 6 5.9876 -4.2131 -0.0014 29 1 -0.3633 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6958 -2.0072 0.0005 33 1 4.0095 -0.6529 0.8895 34 1 4.0089 -0.6540 -0.8905 35 1 6.9648 -1.6998 -0.9610 36 1 5.9348 -0.7871 0.1719 37 1 8.1878 0.0449 1.1211 38 1 9.3156 -1.1397 1.8230 39 1 9.0923 -1.0601 0.0586 40 1 6.9768 -6.4972 1.1324 41 1 8.1956 -5.7952 0.0409 42 1 9.5601 -5.0892 1.9500 43 1 9.1987 -6.8258 2.1124 44 1 8.3037 -4.4607 6.9599 45 1 8.0405 -3.4716 3.5449 46 1 6.8628 -4.3401 4.5605 47 1 5.8165 -3.2619 2.5378 48 1 5.5968 -5.0280 2.5798 49 1 5.1684 -4.9106 0.1738 50 1 6.4552 -4.4301 -0.9618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111533870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -110.636617 kcal Electronic energy + Delta-G solvation = -31683.906185 eV Core-core repulsion = 27518.031930 eV Total energy + Delta-G solvation = -4165.874255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02807 -40.81070 -39.86445 -37.99591 -35.89421 -35.64647 -35.09013 -33.21097 -31.87011 -31.57065 -31.15141 -29.30910 -27.77646 -27.18770 -25.58409 -24.20599 -23.16703 -22.26780 -21.68319 -20.69479 -20.24188 -18.90481 -18.64534 -17.97099 -17.33601 -17.25314 -16.92384 -16.82610 -16.39422 -16.27368 -15.96529 -15.76126 -15.30710 -15.06038 -14.91565 -14.83309 -14.73014 -14.30919 -13.90275 -13.81198 -13.37044 -13.35472 -13.30412 -13.11048 -13.09435 -12.95726 -12.89833 -12.83675 -12.61620 -12.56057 -12.28089 -12.02908 -11.93073 -11.74979 -11.48673 -11.36479 -11.10739 -10.93332 -10.81946 -10.53083 -10.30842 -9.59603 -8.67156 -7.88211 -5.33390 1.31464 1.44798 1.47289 1.53915 1.55443 1.58046 2.29498 2.49698 2.69405 3.18682 3.26217 3.56331 3.66401 3.81188 3.87557 3.88948 3.91846 4.08676 4.18306 4.19895 4.25962 4.39401 4.42855 4.46107 4.54645 4.60881 4.66288 4.66667 4.68668 4.73599 4.84298 4.93160 4.95566 5.02655 5.05234 5.11290 5.12888 5.21072 5.28247 5.32658 5.35481 5.45782 5.63026 5.70576 6.14192 6.34762 6.38973 6.43955 6.83935 7.13535 7.14003 7.85916 8.38730 9.18010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003131 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.722345 B = 8939.492153 C = 9712.977929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.593 6.593 4 N -0.718 5.718 5 C 0.102 3.898 6 C 0.513 3.487 7 O -0.568 6.568 8 N -0.605 5.605 9 C 0.080 3.920 10 C 0.062 3.938 11 H 0.045 0.955 12 C -0.136 4.136 13 O -0.371 6.371 14 C 0.123 3.877 15 C -0.109 4.109 16 C 0.148 3.852 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.274 1.274 24 H -0.295 1.295 25 H -0.279 1.279 26 C 0.195 3.805 27 C -0.144 4.144 28 C 0.099 3.901 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.249 0.751 45 H -0.004 1.004 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 8.936 -17.312 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.473 6.473 4 N -0.373 5.373 5 C -0.025 4.025 6 C 0.301 3.699 7 O -0.447 6.447 8 N -0.337 5.337 9 C -0.042 4.042 10 C 0.004 3.996 11 H 0.063 0.937 12 C -0.193 4.193 13 O -0.291 6.291 14 C 0.083 3.917 15 C -0.148 4.148 16 C 0.023 3.977 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.069 3.931 27 C -0.183 4.183 28 C -0.024 4.024 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.014 0.986 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.209 9.206 -17.201 22.019 hybrid contribution -0.224 -0.916 1.479 1.754 sum -10.433 8.290 -15.721 20.609 Atomic orbital electron populations 1.21931 0.87818 1.06360 1.06396 1.21573 0.92365 0.82149 0.74038 1.90711 1.72037 1.32749 1.51846 1.45884 1.05855 1.10337 1.75254 1.21116 0.82896 0.92846 1.05636 1.20776 0.82024 0.91608 0.75452 1.90677 1.55225 1.47016 1.51806 1.48108 1.05389 1.08041 1.72185 1.22765 0.90547 0.89992 1.00889 1.22599 0.95875 0.84036 0.97131 0.93734 1.21697 0.96979 0.97417 1.03216 1.88004 1.34510 1.13945 1.92631 1.21570 0.88457 0.89087 0.92576 1.21881 0.99264 0.93575 1.00070 1.20903 0.93436 0.98298 0.85046 1.44283 1.57808 1.21138 1.09989 1.19508 1.44397 0.89372 0.86054 0.91446 1.25813 1.01435 0.97702 0.99793 1.70192 1.54074 1.15680 1.18167 0.85358 0.78453 0.78491 0.78265 1.19932 1.22075 1.20546 1.20283 0.90776 0.86799 0.95204 1.22461 0.98663 1.00217 0.97004 1.22281 0.97393 0.83270 0.99445 0.87511 0.88632 0.87025 0.74438 0.88005 0.86659 0.87772 0.86434 0.88390 0.93517 0.90362 0.90668 0.88900 0.96716 0.92634 0.94241 0.98555 0.93758 0.92697 0.93045 0.89389 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.32 71.24 0.74 -0.89 16 2 C 0.51 9.58 7.94 87.66 0.70 10.28 16 3 O -0.59 -16.06 17.09 -3.03 -0.05 -16.11 16 4 N -0.72 -12.94 5.53 -466.79 -2.58 -15.52 16 5 C 0.10 1.89 4.53 85.63 0.39 2.28 16 6 C 0.51 11.95 7.78 87.65 0.68 12.64 16 7 O -0.57 -16.59 15.14 -3.02 -0.05 -16.64 16 8 N -0.61 -13.66 2.52 -817.46 -2.06 -15.73 16 9 C 0.08 1.42 5.83 86.35 0.50 1.93 16 10 C 0.06 1.55 3.01 30.70 0.09 1.64 16 11 H 0.04 1.34 6.29 -2.39 -0.02 1.32 16 12 C -0.14 -2.74 9.57 71.98 0.69 -2.05 16 13 O -0.37 -11.77 8.65 -148.98 -1.29 -13.06 16 14 C 0.12 3.93 0.68 -10.73 -0.01 3.92 16 15 C -0.11 -3.54 5.10 30.66 0.16 -3.38 16 16 C 0.15 6.24 6.28 86.36 0.54 6.78 16 17 N -0.61 -31.21 2.99 -699.09 -2.09 -33.30 16 18 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 19 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.94 -56.47 11.19 21.65 0.24 -56.23 16 22 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 C 0.20 9.70 5.07 86.36 0.44 10.14 16 27 C -0.14 -5.62 4.32 30.65 0.13 -5.48 16 28 C 0.10 2.55 5.29 86.33 0.46 3.01 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.42 7.00 7.44 -92.71 -0.69 6.31 16 33 H 0.10 1.87 7.66 -2.38 -0.02 1.85 16 34 H 0.12 1.76 8.01 -2.38 -0.02 1.74 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 1.49 6.05 -2.39 -0.01 1.48 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.01 0.66 7.83 -2.39 -0.02 0.64 16 43 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.00 -0.19 7.83 -2.39 -0.02 -0.21 16 46 H 0.04 2.53 6.06 -2.39 -0.01 2.51 16 47 H 0.05 2.03 6.15 -2.38 -0.01 2.01 16 48 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.09 2.52 7.07 -2.39 -0.02 2.50 16 50 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -76.47 388.30 1.13 -75.33 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.25 Total: 19.27 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.73 Total: 24.32 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.49 Total: -120.77 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.39 Total: -45.81 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.47 1.13 -75.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111533870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.306 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds