Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.99042 * 2 1 4 4 C 1.54098 * 109.87916 * 121.08327 * 2 1 3 5 5 C 1.54811 * 104.18647 * 121.45418 * 4 2 1 6 6 C 1.54995 * 102.09602 * 20.87977 * 5 4 2 7 7 H 1.09006 * 110.74914 * 81.53786 * 6 5 4 8 8 C 1.52990 * 110.62202 * 204.47389 * 6 5 4 9 9 C 1.50698 * 109.47382 * 180.52127 * 8 6 5 10 10 O 1.21283 * 119.99943 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00057 * 180.02562 * 9 8 6 12 12 C 1.47082 * 120.87919 * 180.02562 * 11 9 8 13 13 C 1.53238 * 108.51910 * 231.20180 * 12 11 9 14 14 N 1.46894 * 109.34456 * 306.17178 * 13 12 11 15 15 C 1.46902 * 111.00228 * 187.25082 * 14 13 12 16 16 C 1.50696 * 109.46978 * 170.00100 * 15 14 13 17 17 O 1.21295 * 120.00238 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00244 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 359.71836 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72210 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72333 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72143 * 23 21 19 27 27 C 1.46905 * 111.26677 * 63.10417 * 14 13 12 28 28 C 1.47076 * 120.88223 * 0.02562 * 11 9 8 29 29 O 1.43742 * 109.88052 * 238.91611 * 2 1 3 30 30 H 1.09002 * 109.47360 * 179.63389 * 1 2 3 31 31 H 1.09005 * 109.47176 * 299.63377 * 1 2 3 32 32 H 1.08995 * 109.47265 * 59.62976 * 1 2 3 33 33 H 1.09005 * 110.49141 * 240.12864 * 4 2 1 34 34 H 1.08998 * 110.48707 * 2.64183 * 4 2 1 35 35 H 1.08996 * 110.90681 * 262.68003 * 5 4 2 36 36 H 1.09007 * 110.90530 * 139.08058 * 5 4 2 37 37 H 1.09002 * 109.47057 * 60.52287 * 8 6 5 38 38 H 1.09001 * 109.47500 * 300.52799 * 8 6 5 39 39 H 1.09006 * 109.62832 * 111.49373 * 12 11 9 40 40 H 1.08995 * 109.62662 * 350.91685 * 12 11 9 41 41 H 1.09004 * 109.49148 * 186.20864 * 13 12 11 42 42 H 1.09003 * 109.49289 * 66.13334 * 13 12 11 43 43 H 1.08999 * 109.46697 * 50.00539 * 15 14 13 44 44 H 1.08993 * 109.47253 * 290.00190 * 15 14 13 45 45 H 0.97004 * 119.99652 * 359.97438 * 18 16 15 46 46 H 0.97000 * 120.00371 * 0.28325 * 22 21 19 47 47 H 1.08992 * 109.49244 * 56.85754 * 27 14 13 48 48 H 1.09005 * 109.49201 * 176.93996 * 27 14 13 49 49 H 1.08997 * 109.63176 * 248.50832 * 28 11 9 50 50 H 1.08999 * 109.62627 * 8.89242 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0539 -0.7482 1.2411 5 6 2.9195 -1.8914 0.6576 6 6 3.2379 -1.3642 -0.7648 7 1 4.0690 -0.6594 -0.7383 8 6 3.5475 -2.5244 -1.7127 9 6 3.8653 -1.9828 -3.0826 10 8 3.8465 -0.7865 -3.2811 11 7 4.1704 -2.8279 -4.0873 12 6 4.4843 -2.3203 -5.4316 13 6 3.6165 -3.0685 -6.4492 14 7 3.7987 -4.5154 -6.2734 15 6 3.1190 -5.2649 -7.3385 16 6 3.5258 -6.7143 -7.2710 17 8 4.3057 -7.0864 -6.4197 18 7 3.0240 -7.5971 -8.1572 19 6 3.3937 -8.9159 -8.0955 20 1 4.0874 -9.2473 -7.3370 21 6 2.8759 -9.8260 -9.0087 22 7 2.0275 -9.4238 -9.9282 23 14 3.3801 -11.6227 -8.9252 24 1 2.6878 -12.3816 -9.9976 25 1 4.8495 -11.7335 -9.1098 26 1 3.0040 -12.1813 -7.6017 27 6 3.3414 -4.9529 -4.9477 28 6 4.1983 -4.2820 -3.8684 29 8 2.0188 -0.6979 -1.1577 30 1 -0.3634 -1.0276 -0.0066 31 1 -0.3634 0.5082 0.8933 32 1 -0.3633 0.5195 -0.8866 33 1 2.6620 -0.0859 1.8574 34 1 1.2245 -1.1528 1.8211 35 1 2.3539 -2.8219 0.6099 36 1 3.8332 -2.0224 1.2375 37 1 2.6818 -3.1839 -1.7746 38 1 4.4037 -3.0835 -1.3354 39 1 5.5378 -2.4931 -5.6515 40 1 4.2676 -1.2532 -5.4798 41 1 3.9134 -2.7844 -7.4588 42 1 2.5688 -2.8120 -6.2920 43 1 3.3996 -4.8535 -8.3080 44 1 2.0399 -5.1839 -7.2079 45 1 2.4006 -7.2995 -8.8382 46 1 1.7659 -8.4907 -9.9719 47 1 2.2976 -4.6702 -4.8114 48 1 3.4388 -6.0357 -4.8683 49 1 5.2243 -4.6432 -3.9382 50 1 3.7957 -4.5115 -2.8819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113294548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -106.589429 kcal Electronic energy + Delta-G solvation = -29972.563742 eV Core-core repulsion = 25806.864987 eV Total energy + Delta-G solvation = -4165.698756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49991 -39.60557 -38.66433 -37.29561 -34.66251 -34.03754 -33.18954 -32.51426 -31.23720 -31.14119 -29.63204 -28.56786 -25.75963 -24.80347 -23.76743 -23.55634 -21.99669 -21.22686 -20.90720 -19.68816 -18.87775 -17.93338 -17.36048 -16.81125 -16.44913 -16.17327 -16.00423 -15.43862 -15.17535 -15.06577 -14.82536 -14.32097 -14.17932 -14.12180 -13.86959 -13.67843 -13.58996 -13.37519 -13.03991 -12.70670 -12.61363 -12.42796 -12.14406 -12.06223 -11.87443 -11.67913 -11.49909 -11.30801 -11.20796 -11.17750 -11.09818 -11.09313 -10.99039 -10.82868 -10.22666 -9.88433 -9.84404 -9.76084 -9.53668 -8.86902 -8.42696 -8.07659 -7.97596 -6.77675 -3.91171 2.60731 2.89417 3.28734 3.33075 3.50826 3.53266 3.79662 3.87913 4.18237 4.23985 4.27855 4.48130 4.57669 4.66935 4.76180 4.86314 4.93215 5.00452 5.03010 5.08841 5.12634 5.18353 5.21279 5.22174 5.29036 5.32821 5.38614 5.39972 5.48602 5.50880 5.62050 5.67053 5.72607 5.73778 5.77832 5.78720 5.84509 5.88096 5.98329 6.08809 6.13136 6.46930 6.76849 7.05583 7.23145 7.39499 7.77878 8.05310 8.14732 8.57321 8.77063 9.44747 9.84705 10.65580 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.002009 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.750748 B =13931.913248 C =14387.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.095 3.905 7 H 0.076 0.924 8 C -0.137 4.137 9 C 0.517 3.483 10 O -0.536 6.536 11 N -0.615 5.615 12 C 0.120 3.880 13 C 0.040 3.960 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.446 3.554 17 O -0.572 6.572 18 N -0.575 5.575 19 C -0.381 4.381 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.900 5.900 23 Si 1.091 2.909 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.038 3.962 28 C 0.115 3.885 29 O -0.357 6.357 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.375 0.625 46 H 0.261 0.739 47 H 0.027 0.973 48 H 0.115 0.885 49 H 0.082 0.918 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 16.678 18.675 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.084 0.916 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.037 3.963 7 H 0.094 0.906 8 C -0.176 4.176 9 C 0.305 3.695 10 O -0.413 6.413 11 N -0.350 5.350 12 C -0.003 4.003 13 C -0.088 4.088 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.232 3.768 17 O -0.456 6.456 18 N -0.213 5.213 19 C -0.511 4.511 20 H 0.117 0.883 21 C -0.212 4.212 22 N -0.539 5.539 23 Si 0.917 3.083 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.090 4.090 28 C -0.008 4.008 29 O -0.276 6.276 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.208 0.792 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.133 0.867 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.163 15.453 18.187 23.866 hybrid contribution -0.978 1.807 0.428 2.099 sum -0.814 17.261 18.615 25.399 Atomic orbital electron populations 1.21919 0.93870 1.02713 1.02249 1.22699 0.95067 0.95904 0.85128 0.91644 1.23010 1.00186 0.97640 0.98141 1.23196 1.00626 0.99155 0.96011 1.22802 0.89052 0.92821 0.91627 0.90582 1.21790 1.04110 0.98882 0.92848 1.20478 0.76340 0.86470 0.86216 1.90697 1.51919 1.15205 1.83440 1.48271 1.69080 1.07297 1.10344 1.21654 0.99479 0.98833 0.80324 1.22513 0.98256 0.88326 0.99748 1.61500 1.57913 1.02483 1.02000 1.21847 0.96488 0.94490 0.95669 1.19634 0.85802 0.86369 0.85032 1.90475 1.37682 1.79400 1.38046 1.41956 1.41523 1.08701 1.29124 1.20516 1.28654 0.83650 1.18254 0.88284 1.26518 0.95296 1.06721 0.92708 1.70903 1.31363 1.18233 1.33433 0.83131 0.76160 0.72545 0.76438 1.20433 1.20984 1.21024 1.22648 0.95260 1.03144 0.87965 1.21897 1.01895 0.78404 0.98610 1.89007 1.38870 1.67356 1.32372 0.91977 0.91475 0.91922 0.90751 0.90315 0.90211 0.90023 0.88036 0.87453 0.90700 0.88881 0.89577 0.94696 0.89243 0.93521 0.79170 0.92752 0.95459 0.86718 0.90004 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.36 37.16 0.35 -0.82 16 2 C 0.07 0.63 4.06 -26.16 -0.11 0.52 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.15 -1.01 6.64 -25.20 -0.17 -1.18 16 5 C -0.15 -1.05 6.59 -24.72 -0.16 -1.21 16 6 C 0.10 0.94 2.80 -25.68 -0.07 0.87 16 7 H 0.08 0.80 8.03 -51.93 -0.42 0.39 16 8 C -0.14 -1.31 3.84 -27.89 -0.11 -1.41 16 9 C 0.52 6.86 7.62 -10.99 -0.08 6.78 16 10 O -0.54 -8.92 15.01 -5.80 -0.09 -9.01 16 11 N -0.62 -7.94 3.01 -172.45 -0.52 -8.46 16 12 C 0.12 1.54 6.60 -3.60 -0.02 1.52 16 13 C 0.04 0.54 5.62 -3.70 -0.02 0.51 16 14 N -0.51 -8.27 4.37 -235.75 -1.03 -9.30 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 16 C 0.45 10.15 7.44 -10.99 -0.08 10.06 16 17 O -0.57 -14.73 13.91 5.54 0.08 -14.66 16 18 N -0.58 -14.12 5.28 -10.96 -0.06 -14.18 16 19 C -0.38 -10.48 9.68 -14.93 -0.14 -10.63 16 20 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 21 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 22 N -0.90 -24.94 13.68 55.50 0.76 -24.18 16 23 Si 1.09 23.88 29.92 -169.99 -5.09 18.80 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.04 0.58 5.26 -3.68 -0.02 0.56 16 28 C 0.11 1.41 6.51 -3.59 -0.02 1.39 16 29 O -0.36 -4.42 10.28 -46.59 -0.48 -4.90 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 35 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.91 7.66 -51.93 -0.40 0.51 16 38 H 0.11 0.75 8.00 -51.93 -0.42 0.33 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.22 7.06 -51.93 -0.37 0.85 16 41 H 0.09 1.01 7.99 -51.93 -0.41 0.60 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.38 8.56 6.73 -40.82 -0.27 8.29 16 46 H 0.26 6.95 6.78 -40.82 -0.28 6.68 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.11 2.08 5.77 -51.93 -0.30 1.79 16 49 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -34.56 394.20 -9.50 -44.06 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.23 Total: 8.51 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.79 Total: 7.38 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.85 Total: -56.12 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.49 Total: -28.56 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.09 Total: 18.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.56 -9.50 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113294548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.530 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds