Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.99042 * 2 1 4 4 C 1.54098 * 109.87916 * 121.08327 * 2 1 3 5 5 C 1.54811 * 104.18647 * 121.45418 * 4 2 1 6 6 C 1.54995 * 102.09602 * 20.87977 * 5 4 2 7 7 H 1.09006 * 110.74914 * 81.53786 * 6 5 4 8 8 C 1.52990 * 110.62202 * 204.47389 * 6 5 4 9 9 C 1.50698 * 109.47382 * 180.52127 * 8 6 5 10 10 O 1.21283 * 119.99943 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00057 * 180.02562 * 9 8 6 12 12 C 1.47082 * 120.87919 * 180.02562 * 11 9 8 13 13 C 1.53238 * 108.51910 * 231.20180 * 12 11 9 14 14 N 1.46894 * 109.34456 * 306.17178 * 13 12 11 15 15 C 1.46902 * 111.00228 * 187.25082 * 14 13 12 16 16 C 1.50696 * 109.46978 * 170.00100 * 15 14 13 17 17 O 1.21295 * 120.00238 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00244 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 359.71836 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72210 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72333 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72143 * 23 21 19 27 27 C 1.46905 * 111.26677 * 63.10417 * 14 13 12 28 28 C 1.47076 * 120.88223 * 0.02562 * 11 9 8 29 29 O 1.43742 * 109.88052 * 238.91611 * 2 1 3 30 30 H 1.09002 * 109.47360 * 179.63389 * 1 2 3 31 31 H 1.09005 * 109.47176 * 299.63377 * 1 2 3 32 32 H 1.08995 * 109.47265 * 59.62976 * 1 2 3 33 33 H 1.09005 * 110.49141 * 240.12864 * 4 2 1 34 34 H 1.08998 * 110.48707 * 2.64183 * 4 2 1 35 35 H 1.08996 * 110.90681 * 262.68003 * 5 4 2 36 36 H 1.09007 * 110.90530 * 139.08058 * 5 4 2 37 37 H 1.09002 * 109.47057 * 60.52287 * 8 6 5 38 38 H 1.09001 * 109.47500 * 300.52799 * 8 6 5 39 39 H 1.09006 * 109.62832 * 111.49373 * 12 11 9 40 40 H 1.08995 * 109.62662 * 350.91685 * 12 11 9 41 41 H 1.09004 * 109.49148 * 186.20864 * 13 12 11 42 42 H 1.09003 * 109.49289 * 66.13334 * 13 12 11 43 43 H 1.08999 * 109.46697 * 50.00539 * 15 14 13 44 44 H 1.08993 * 109.47253 * 290.00190 * 15 14 13 45 45 H 0.97004 * 119.99652 * 359.97438 * 18 16 15 46 46 H 0.97000 * 120.00371 * 0.28325 * 22 21 19 47 47 H 1.08992 * 109.49244 * 56.85754 * 27 14 13 48 48 H 1.09005 * 109.49201 * 176.93996 * 27 14 13 49 49 H 1.08997 * 109.63176 * 248.50832 * 28 11 9 50 50 H 1.08999 * 109.62627 * 8.89242 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0539 -0.7482 1.2411 5 6 2.9195 -1.8914 0.6576 6 6 3.2379 -1.3642 -0.7648 7 1 4.0690 -0.6594 -0.7383 8 6 3.5475 -2.5244 -1.7127 9 6 3.8653 -1.9828 -3.0826 10 8 3.8465 -0.7865 -3.2811 11 7 4.1704 -2.8279 -4.0873 12 6 4.4843 -2.3203 -5.4316 13 6 3.6165 -3.0685 -6.4492 14 7 3.7987 -4.5154 -6.2734 15 6 3.1190 -5.2649 -7.3385 16 6 3.5258 -6.7143 -7.2710 17 8 4.3057 -7.0864 -6.4197 18 7 3.0240 -7.5971 -8.1572 19 6 3.3937 -8.9159 -8.0955 20 1 4.0874 -9.2473 -7.3370 21 6 2.8759 -9.8260 -9.0087 22 7 2.0275 -9.4238 -9.9282 23 14 3.3801 -11.6227 -8.9252 24 1 2.6878 -12.3816 -9.9976 25 1 4.8495 -11.7335 -9.1098 26 1 3.0040 -12.1813 -7.6017 27 6 3.3414 -4.9529 -4.9477 28 6 4.1983 -4.2820 -3.8684 29 8 2.0188 -0.6979 -1.1577 30 1 -0.3634 -1.0276 -0.0066 31 1 -0.3634 0.5082 0.8933 32 1 -0.3633 0.5195 -0.8866 33 1 2.6620 -0.0859 1.8574 34 1 1.2245 -1.1528 1.8211 35 1 2.3539 -2.8219 0.6099 36 1 3.8332 -2.0224 1.2375 37 1 2.6818 -3.1839 -1.7746 38 1 4.4037 -3.0835 -1.3354 39 1 5.5378 -2.4931 -5.6515 40 1 4.2676 -1.2532 -5.4798 41 1 3.9134 -2.7844 -7.4588 42 1 2.5688 -2.8120 -6.2920 43 1 3.3996 -4.8535 -8.3080 44 1 2.0399 -5.1839 -7.2079 45 1 2.4006 -7.2995 -8.8382 46 1 1.7659 -8.4907 -9.9719 47 1 2.2976 -4.6702 -4.8114 48 1 3.4388 -6.0357 -4.8683 49 1 5.2243 -4.6432 -3.9382 50 1 3.7957 -4.5115 -2.8819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113294548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -131.011451 kcal Electronic energy + Delta-G solvation = -29973.622761 eV Core-core repulsion = 25806.864987 eV Total energy + Delta-G solvation = -4166.757774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49248 -40.63414 -40.08736 -38.65000 -36.39279 -35.48877 -33.94546 -33.18601 -33.12840 -32.24771 -30.58999 -29.69511 -27.20926 -25.86302 -25.22789 -24.60597 -22.84241 -21.93600 -21.81902 -21.43761 -19.98968 -19.85515 -18.32336 -18.11426 -17.62427 -17.03212 -16.91903 -16.82362 -16.47731 -16.28542 -15.77945 -15.71544 -15.60604 -15.42693 -15.33613 -14.84484 -14.47431 -14.27323 -14.05104 -13.94494 -13.37961 -13.33144 -13.22783 -13.11555 -12.99193 -12.88320 -12.74517 -12.52519 -12.42667 -12.31378 -12.21130 -12.01212 -11.91117 -11.85201 -11.72300 -11.51669 -11.44238 -10.82829 -10.58123 -10.39949 -10.08228 -9.79202 -9.29591 -8.89862 -6.03837 1.54214 1.56223 1.60049 1.83780 1.90096 2.02375 2.39524 2.65340 2.85129 3.18231 3.22291 3.42787 3.59319 3.78549 3.86649 3.92924 4.01169 4.01898 4.04363 4.12285 4.19351 4.21201 4.30069 4.36757 4.39396 4.41257 4.48148 4.50860 4.54343 4.62358 4.69223 4.75741 4.80990 4.87607 4.88349 4.93410 5.00826 5.06964 5.13581 5.20117 5.28978 5.40482 5.59689 5.82790 5.98512 6.04183 6.08902 6.37606 6.59756 6.77255 7.13076 7.46896 7.94711 8.57622 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.002009 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.750748 B =13931.913248 C =14387.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 H 0.058 0.942 4 C -0.147 4.147 5 C -0.144 4.144 6 C 0.088 3.912 7 H 0.062 0.938 8 C -0.132 4.132 9 C 0.512 3.488 10 O -0.575 6.575 11 N -0.616 5.616 12 C 0.119 3.881 13 C 0.047 3.953 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.448 3.552 17 O -0.603 6.603 18 N -0.589 5.589 19 C -0.405 4.405 20 H 0.076 0.924 21 C -0.045 4.045 22 N -0.919 5.919 23 Si 1.133 2.867 24 H -0.276 1.276 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.040 3.960 28 C 0.123 3.877 29 O -0.392 6.392 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.383 0.617 46 H 0.259 0.741 47 H 0.031 0.969 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 16.681 20.222 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 H 0.076 0.924 4 C -0.185 4.185 5 C -0.181 4.181 6 C 0.030 3.970 7 H 0.079 0.921 8 C -0.172 4.172 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.349 5.349 12 C -0.003 4.003 13 C -0.081 4.081 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.235 3.765 17 O -0.488 6.488 18 N -0.228 5.228 19 C -0.534 4.534 20 H 0.094 0.906 21 C -0.243 4.243 22 N -0.559 5.559 23 Si 0.953 3.047 24 H -0.201 1.201 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.089 4.089 28 C 0.000 4.000 29 O -0.313 6.313 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.053 0.947 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.217 0.783 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.108 15.480 19.742 25.088 hybrid contribution -0.939 1.929 -0.029 2.145 sum -0.830 17.409 19.713 26.313 Atomic orbital electron populations 1.21917 0.93193 1.02675 1.02632 1.22902 0.95729 0.95766 0.85529 0.92351 1.23008 1.00750 0.97555 0.97147 1.23185 1.01633 0.99262 0.94042 1.22913 0.88002 0.92613 0.93474 0.92050 1.21893 1.05669 0.99102 0.90505 1.21154 0.75263 0.85964 0.87397 1.90679 1.53636 1.16953 1.84206 1.48353 1.68706 1.07496 1.10393 1.21636 0.99562 0.98595 0.80549 1.22527 0.98350 0.86318 1.00915 1.61497 1.58140 1.03894 1.01948 1.21729 0.97496 0.90719 0.97393 1.20631 0.84188 0.88295 0.83350 1.90459 1.38777 1.80615 1.38974 1.42016 1.42376 1.08274 1.30132 1.20502 1.29116 0.85422 1.18363 0.90574 1.27808 0.94597 1.10040 0.91866 1.70973 1.32343 1.18341 1.34227 0.82630 0.76481 0.68527 0.77040 1.20061 1.19828 1.19672 1.22563 0.96187 1.01499 0.88634 1.21879 1.01243 0.77660 0.99182 1.88973 1.39819 1.68020 1.34451 0.92119 0.89267 0.93407 0.89564 0.88974 0.89447 0.88038 0.86984 0.84394 0.90463 0.89207 0.87799 0.94710 0.86998 0.91798 0.78313 0.93053 0.95034 0.89837 0.90493 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.36 71.98 0.67 -1.48 16 2 C 0.06 1.01 4.06 30.96 0.13 1.13 16 3 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.15 -1.63 6.64 31.58 0.21 -1.42 16 5 C -0.14 -1.60 6.59 31.90 0.21 -1.39 16 6 C 0.09 1.62 2.80 31.27 0.09 1.71 16 7 H 0.06 1.28 8.03 -2.38 -0.02 1.26 16 8 C -0.13 -2.26 3.84 29.84 0.11 -2.15 16 9 C 0.51 13.07 7.62 87.66 0.67 13.73 16 10 O -0.58 -19.19 15.01 7.82 0.12 -19.07 16 11 N -0.62 -15.06 3.01 -817.88 -2.46 -17.52 16 12 C 0.12 2.95 6.60 86.35 0.57 3.52 16 13 C 0.05 1.17 5.62 86.38 0.49 1.65 16 14 N -0.53 -16.33 4.37 -899.76 -3.93 -20.27 16 15 C 0.06 1.91 5.45 85.56 0.47 2.38 16 16 C 0.45 20.38 7.44 87.66 0.65 21.03 16 17 O -0.60 -31.43 13.91 -3.08 -0.04 -31.48 16 18 N -0.59 -29.15 5.28 -306.98 -1.62 -30.77 16 19 C -0.40 -22.56 9.68 84.04 0.81 -21.75 16 20 H 0.08 4.53 7.16 -2.91 -0.02 4.50 16 21 C -0.05 -2.42 5.50 84.92 0.47 -1.95 16 22 N -0.92 -50.92 13.68 21.66 0.30 -50.62 16 23 Si 1.13 47.74 29.92 68.60 2.05 49.79 16 24 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C 0.04 1.17 5.26 86.39 0.45 1.62 16 28 C 0.12 2.81 6.51 86.36 0.56 3.37 16 29 O -0.39 -9.60 10.28 -138.12 -1.42 -11.02 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.09 0.78 7.70 -2.39 -0.02 0.77 16 35 H 0.09 0.86 8.06 -2.39 -0.02 0.84 16 36 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.11 1.71 7.66 -2.39 -0.02 1.69 16 38 H 0.14 1.47 8.00 -2.39 -0.02 1.45 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.09 2.30 7.06 -2.39 -0.02 2.29 16 41 H 0.10 2.20 7.99 -2.39 -0.02 2.18 16 42 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 3.24 7.97 -2.39 -0.02 3.22 16 44 H 0.06 1.93 8.12 -2.39 -0.02 1.92 16 45 H 0.38 17.56 6.73 -92.71 -0.62 16.94 16 46 H 0.26 13.85 6.78 -92.71 -0.63 13.23 16 47 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 3.04 5.77 -2.38 -0.01 3.02 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.12 1.89 6.02 -2.39 -0.01 1.87 16 Total: -1.00 -76.34 394.20 0.00 -76.34 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.46 Total: 34.61 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 6.56 Total: 20.01 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -7.72 Total: -119.17 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -1.35 Total: -61.57 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.05 Total: 49.79 kcal Total: -76.34 0.00 -76.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113294548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.675 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds