Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.58422 * 2 1 4 4 C 1.53186 * 109.70466 * 239.64521 * 2 1 3 5 5 H 1.08994 * 109.49848 * 65.55369 * 4 2 1 6 6 O 1.42903 * 109.49708 * 305.48646 * 4 2 1 7 7 C 1.53037 * 109.31356 * 185.50714 * 4 2 1 8 8 C 1.53038 * 109.54143 * 61.36303 * 7 4 2 9 9 C 1.53633 * 109.24049 * 298.51411 * 8 7 4 10 10 N 1.46918 * 109.58698 * 120.27958 * 2 1 3 11 11 C 1.34775 * 120.63629 * 353.51951 * 10 2 1 12 12 O 1.21355 * 119.99807 * 8.97303 * 11 10 2 13 13 C 1.49449 * 120.00721 * 188.97502 * 11 10 2 14 14 O 1.21347 * 119.99550 * 6.61855 * 13 11 10 15 15 N 1.34773 * 120.00215 * 186.62413 * 13 11 10 16 16 C 1.46496 * 119.99965 * 180.02562 * 15 13 11 17 17 C 1.53041 * 109.46197 * 154.99544 * 16 15 13 18 18 C 1.53192 * 109.31327 * 181.38307 * 17 16 15 19 19 N 1.46930 * 108.77793 * 305.36715 * 18 17 16 20 20 C 1.36938 * 120.63095 * 233.58766 * 19 18 17 21 21 H 1.07997 * 119.99830 * 152.85423 * 20 19 18 22 22 C 1.38820 * 119.99943 * 332.84931 * 20 19 18 23 23 N 1.31619 * 119.99604 * 156.29709 * 22 20 19 24 24 Si 1.86798 * 120.00062 * 336.29818 * 22 20 19 25 25 H 1.48503 * 109.46889 * 88.25208 * 24 22 20 26 26 H 1.48496 * 109.47038 * 208.25242 * 24 22 20 27 27 H 1.48498 * 109.47081 * 328.25829 * 24 22 20 28 28 C 1.46924 * 118.73449 * 53.85830 * 19 18 17 29 29 C 1.53037 * 109.45910 * 275.06426 * 16 15 13 30 30 H 1.08999 * 109.47265 * 302.43797 * 1 2 3 31 31 H 1.09001 * 109.47203 * 62.44094 * 1 2 3 32 32 H 1.09004 * 109.47001 * 182.43595 * 1 2 3 33 33 H 0.96702 * 114.00203 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.46488 * 181.38697 * 7 4 2 35 35 H 1.09005 * 109.46131 * 301.34353 * 7 4 2 36 36 H 1.09003 * 109.50043 * 58.58618 * 8 7 4 37 37 H 1.08994 * 109.50221 * 178.68850 * 8 7 4 38 38 H 1.08998 * 109.73683 * 295.11741 * 9 8 7 39 39 H 1.08998 * 109.66342 * 174.54820 * 9 8 7 40 40 H 0.96996 * 119.99936 * 359.97438 * 15 13 11 41 41 H 1.08994 * 109.46393 * 35.02722 * 16 15 13 42 42 H 1.09008 * 109.49426 * 61.43495 * 17 16 15 43 43 H 1.08998 * 109.50312 * 301.33829 * 17 16 15 44 44 H 1.09006 * 109.58343 * 185.57920 * 18 17 16 45 45 H 1.08994 * 109.58426 * 65.15786 * 18 17 16 46 46 H 0.97004 * 119.99565 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.58437 * 65.93327 * 28 19 18 48 48 H 1.09003 * 109.58127 * 186.35335 * 28 19 18 49 49 H 1.08998 * 109.50068 * 298.56669 * 29 16 15 50 50 H 1.08998 * 109.49665 * 58.63560 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 1 1.7689 -0.1672 -2.1364 6 8 1.4711 -2.0355 -1.3051 7 6 3.5705 -0.8443 -1.1673 8 6 3.9603 -1.6606 0.0670 9 6 3.4660 -0.9373 1.3291 10 7 2.0225 -0.6979 1.1953 11 6 1.1672 -1.1059 2.1537 12 8 -0.0299 -1.0463 1.9639 13 6 1.6929 -1.6317 3.4501 14 8 2.8816 -1.5802 3.6883 15 7 0.8467 -2.1630 4.3546 16 6 1.3620 -2.6778 5.6257 17 6 0.2530 -2.6370 6.6795 18 6 0.8049 -3.1436 8.0157 19 7 1.3936 -4.4741 7.8104 20 6 1.0067 -5.5353 8.5845 21 1 1.0734 -6.5404 8.1952 22 6 0.5289 -5.3191 9.8699 23 7 -0.2569 -6.2089 10.4381 24 14 1.0013 -3.7652 10.7928 25 1 0.0294 -2.6875 10.4776 26 1 0.9867 -4.0333 12.2533 27 1 2.3630 -3.3396 10.3811 28 6 2.4097 -4.6428 6.7627 29 6 1.8358 -4.1207 5.4368 30 1 -0.3634 0.5512 0.8673 31 1 -0.3634 0.4755 -0.9111 32 1 -0.3633 -1.0268 0.0437 33 1 1.7543 -2.5548 -2.0701 34 1 3.9430 -1.3407 -2.0634 35 1 4.0071 0.1520 -1.0964 36 1 3.5038 -2.6488 0.0088 37 1 5.0447 -1.7622 0.1086 38 1 3.9860 0.0147 1.4352 39 1 3.6538 -1.5583 2.2050 40 1 -0.1035 -2.2038 4.1643 41 1 2.1984 -2.0613 5.9549 42 1 -0.5735 -3.2733 6.3626 43 1 -0.1002 -1.6126 6.7967 44 1 -0.0040 -3.2103 8.7434 45 1 1.5701 -2.4575 8.3786 46 1 -0.5911 -6.0577 11.3361 47 1 3.3032 -4.0764 7.0256 48 1 2.6602 -5.6990 6.6633 49 1 0.9945 -4.7429 5.1316 50 1 2.6089 -4.1522 4.6691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119535788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -64.632998 kcal Electronic energy + Delta-G solvation = -31220.935240 eV Core-core repulsion = 27057.055852 eV Total energy + Delta-G solvation = -4163.879388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.30061 -39.59532 -38.23769 -37.65614 -35.88982 -34.62667 -33.07521 -32.19264 -31.98533 -30.46670 -30.16546 -27.72741 -25.88519 -24.95731 -23.88351 -22.95304 -22.34636 -21.67333 -20.87819 -20.06023 -19.39636 -17.75939 -17.36773 -16.79735 -16.65233 -16.30020 -15.89389 -15.54593 -15.35483 -15.02794 -14.93426 -14.31840 -14.17580 -14.06852 -13.80332 -13.61641 -13.32224 -13.12445 -13.00930 -12.88033 -12.81869 -12.47794 -12.16469 -12.02544 -11.89574 -11.76993 -11.67594 -11.45818 -11.07704 -10.99316 -10.79738 -10.64485 -10.55440 -10.32506 -10.20001 -10.13892 -9.83230 -9.50654 -9.02332 -8.92484 -8.83420 -8.59332 -7.02070 -5.97573 -3.31227 1.40328 2.23147 3.17835 3.30901 3.38902 3.48782 3.52385 3.78714 4.29287 4.31777 4.40419 4.51906 4.52326 4.69006 4.92066 4.94325 5.00964 5.08455 5.10214 5.24316 5.28176 5.33505 5.35514 5.40813 5.51754 5.60574 5.61949 5.72628 5.78597 5.89365 5.92986 6.00077 6.04471 6.11016 6.15179 6.25518 6.34640 6.48273 6.58361 6.60683 6.63419 6.64742 6.87111 6.96132 7.27025 7.30072 7.73914 7.94144 8.01565 8.31437 8.92294 9.70406 10.07830 11.18275 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.002480 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.820611 B =11286.398270 C =11538.217917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.085 0.915 4 C 0.093 3.907 5 H 0.065 0.935 6 O -0.552 6.552 7 C -0.155 4.155 8 C -0.131 4.131 9 C 0.069 3.931 10 N -0.574 5.574 11 C 0.512 3.488 12 O -0.512 6.512 13 C 0.504 3.496 14 O -0.519 6.519 15 N -0.688 5.688 16 C 0.148 3.852 17 C -0.141 4.141 18 C 0.131 3.869 19 N -0.605 5.605 20 C -0.262 4.262 21 H 0.086 0.914 22 C 0.025 3.975 23 N -0.903 5.903 24 Si 0.876 3.124 25 H -0.286 1.286 26 H -0.302 1.302 27 H -0.272 1.272 28 C 0.151 3.849 29 C -0.142 4.142 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.375 0.625 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.144 0.856 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.026 0.974 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 13.787 -25.344 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.103 0.897 4 C 0.033 3.967 5 H 0.083 0.917 6 O -0.357 6.357 7 C -0.193 4.193 8 C -0.169 4.169 9 C -0.052 4.052 10 N -0.308 5.308 11 C 0.294 3.706 12 O -0.388 6.388 13 C 0.285 3.715 14 O -0.397 6.397 15 N -0.338 5.338 16 C 0.045 3.955 17 C -0.181 4.181 18 C 0.004 3.996 19 N -0.329 5.329 20 C -0.390 4.390 21 H 0.103 0.897 22 C -0.174 4.174 23 N -0.546 5.546 24 Si 0.706 3.294 25 H -0.213 1.213 26 H -0.230 1.230 27 H -0.197 1.197 28 C 0.024 3.976 29 C -0.182 4.182 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.221 0.779 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.231 13.969 -24.538 28.915 hybrid contribution 0.221 0.797 -0.198 0.851 sum 6.451 14.766 -24.737 29.522 Atomic orbital electron populations 1.22171 0.91711 1.04885 1.00581 1.21451 0.96990 0.94178 0.82862 0.89704 1.22205 0.91946 0.85179 0.97337 0.91738 1.86621 1.71351 1.26864 1.50824 1.22283 0.96291 1.01548 0.99217 1.21923 1.01077 0.99983 0.93957 1.22978 0.78285 1.02332 1.01617 1.47791 1.08108 1.56059 1.18822 1.20164 0.86408 0.79114 0.84887 1.90810 1.15228 1.53244 1.79549 1.20237 0.86685 0.79116 0.85443 1.90469 1.15190 1.56944 1.77117 1.46172 1.11630 1.58376 1.17649 1.21194 0.97620 0.95516 0.81214 1.22372 0.97888 1.00943 0.96915 1.21324 0.96922 0.86950 0.94377 1.44435 1.43210 1.06179 1.39076 1.18907 1.38504 0.87737 0.93840 0.89657 1.25285 0.98492 0.96962 0.96680 1.69878 1.32262 1.36755 1.15696 0.87068 0.79609 0.83843 0.78850 1.21330 1.23009 1.19745 1.20989 0.90498 0.99492 0.86596 1.22475 1.01036 0.94920 0.99748 0.91248 0.93864 0.89539 0.77876 0.91405 0.90876 0.90832 0.90642 0.91569 0.83894 0.75424 0.89446 0.90826 0.92013 0.90114 0.95640 0.92728 0.95595 0.91440 0.91525 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.36 37.16 0.27 -1.16 16 2 C 0.15 1.36 3.28 -67.61 -0.22 1.13 16 3 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.09 0.66 3.31 -26.62 -0.09 0.58 16 5 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 6 O -0.55 -4.73 11.68 -35.23 -0.41 -5.14 16 7 C -0.16 -0.92 5.61 -26.69 -0.15 -1.07 16 8 C -0.13 -1.01 5.96 -26.38 -0.16 -1.17 16 9 C 0.07 0.68 6.01 -3.48 -0.02 0.66 16 10 N -0.57 -6.36 2.91 -165.46 -0.48 -6.84 16 11 C 0.51 6.83 7.65 -11.59 -0.09 6.74 16 12 O -0.51 -7.46 11.92 5.49 0.07 -7.40 16 13 C 0.50 7.14 7.71 -11.59 -0.09 7.05 16 14 O -0.52 -7.93 12.85 5.50 0.07 -7.86 16 15 N -0.69 -9.62 5.07 -54.20 -0.27 -9.90 16 16 C 0.15 2.34 2.41 -67.89 -0.16 2.17 16 17 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 18 C 0.13 2.77 4.23 -3.71 -0.02 2.75 16 19 N -0.61 -14.12 2.75 -172.05 -0.47 -14.59 16 20 C -0.26 -7.22 10.00 -15.06 -0.15 -7.37 16 21 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.03 0.72 5.16 -17.43 -0.09 0.63 16 23 N -0.90 -27.42 13.97 55.49 0.78 -26.64 16 24 Si 0.88 22.02 24.50 -169.99 -4.16 17.85 16 25 H -0.29 -6.83 6.42 56.52 0.36 -6.47 16 26 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 27 H -0.27 -6.80 7.09 56.52 0.40 -6.40 16 28 C 0.15 2.95 6.54 -3.49 -0.02 2.93 16 29 C -0.14 -2.37 5.67 -26.39 -0.15 -2.52 16 30 H 0.07 0.82 6.78 -51.93 -0.35 0.47 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 1.14 6.22 -51.93 -0.32 0.82 16 33 H 0.37 1.69 9.08 45.56 0.41 2.11 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.67 7.61 -51.93 -0.40 0.28 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.14 1.71 4.32 -54.77 -0.24 1.48 16 40 H 0.41 5.32 8.09 -40.82 -0.33 4.99 16 41 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 42 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.88 4.57 -51.93 -0.24 1.64 16 45 H 0.03 0.54 7.40 -51.93 -0.38 0.15 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.37 376.37 -7.83 -40.19 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.32 Total: 5.84 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.28 Total: 8.81 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.45 Total: -57.97 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.28 Total: -20.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.16 Total: 17.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.37 -7.83 -40.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119535788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.441 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds