Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.51352 * 2 1 4 4 C 1.53276 * 109.51159 * 120.10652 * 2 1 3 5 5 N 1.47164 * 108.55698 * 172.86390 * 4 2 1 6 6 C 1.34779 * 121.06643 * 128.85267 * 5 4 2 7 7 O 1.21273 * 120.00093 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99767 * 359.97438 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 13 13 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 14 14 C 1.47305 * 117.86850 * 309.12495 * 5 4 2 15 15 C 1.52113 * 108.60989 * 49.08117 * 14 5 4 16 16 C 1.54514 * 109.89422 * 72.26105 * 15 14 5 17 17 C 1.55015 * 101.52795 * 153.10060 * 16 15 14 18 18 N 1.47487 * 104.89966 * 323.62530 * 17 16 15 19 19 C 1.36928 * 125.66445 * 204.04993 * 18 17 16 20 20 H 1.07999 * 120.00153 * 179.97438 * 19 18 17 21 21 C 1.38819 * 120.00234 * 359.95609 * 19 18 17 22 22 N 1.31619 * 119.99712 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47006 * 90.00331 * 23 21 19 25 25 H 1.48501 * 109.46949 * 209.99882 * 23 21 19 26 26 H 1.48496 * 109.47239 * 330.00006 * 23 21 19 27 27 C 1.47189 * 108.66893 * 24.01369 * 18 17 16 28 28 O 1.42067 * 111.19222 * 309.80388 * 15 14 5 29 29 H 1.08998 * 109.46899 * 299.90084 * 1 2 3 30 30 H 1.09003 * 109.46626 * 59.89388 * 1 2 3 31 31 H 1.08996 * 109.47386 * 179.89172 * 1 2 3 32 32 H 1.09001 * 109.62632 * 53.13973 * 4 2 1 33 33 H 1.08999 * 109.77474 * 292.68049 * 4 2 1 34 34 H 1.09001 * 109.46797 * 60.00350 * 8 6 5 35 35 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 36 36 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 37 37 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 40 40 H 0.97003 * 119.99640 * 0.02562 * 12 11 10 41 41 H 0.96993 * 120.00253 * 180.02562 * 12 11 10 42 42 H 1.08995 * 109.67975 * 168.87040 * 14 5 4 43 43 H 1.08999 * 109.67844 * 289.42292 * 14 5 4 44 44 H 1.09004 * 111.01290 * 271.16359 * 16 15 14 45 45 H 1.09002 * 111.01777 * 35.03599 * 16 15 14 46 46 H 1.09006 * 110.35544 * 204.76828 * 17 16 15 47 47 H 1.08998 * 110.35647 * 82.48189 * 17 16 15 48 48 H 0.96993 * 119.99738 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.90454 * 239.13148 * 27 18 17 50 50 H 1.08999 * 109.91090 * 117.87150 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2498 5 7 3.5032 -0.8641 1.1448 6 6 4.3128 -0.4777 2.1507 7 8 5.5145 -0.6010 2.0433 8 6 3.7248 0.1086 3.4083 9 6 4.8514 0.4611 4.3817 10 6 4.2545 1.0558 5.6588 11 6 5.3640 1.4036 6.6173 12 7 5.0734 1.9446 7.8170 13 8 6.5187 1.1967 6.3092 14 6 4.0530 -1.4339 -0.0973 15 6 3.4244 -0.7146 -1.2811 16 6 3.9930 0.7181 -1.3881 17 6 3.8348 1.0018 -2.9039 18 7 4.1125 -0.2884 -3.5622 19 6 4.5443 -0.4503 -4.8515 20 1 4.7200 -1.4418 -5.2417 21 6 4.7557 0.6602 -5.6572 22 7 4.5416 1.8687 -5.1817 23 14 5.3440 0.4394 -7.4163 24 1 4.1711 0.3173 -8.3189 25 1 6.1570 1.6155 -7.8177 26 1 6.1715 -0.7900 -7.5109 27 6 3.8493 -1.3732 -2.6027 28 8 2.0089 -0.6768 -1.1664 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3634 -1.0276 -0.0019 32 1 1.5837 -1.7116 1.3143 33 1 1.7923 -0.1466 2.1395 34 1 3.0584 -0.6191 3.8714 35 1 3.1634 1.0096 3.1612 36 1 5.4132 -0.4397 4.6289 37 1 5.5174 1.1890 3.9184 38 1 3.6924 1.9565 5.4119 39 1 3.5887 0.3277 6.1220 40 1 4.1499 2.1098 8.0636 41 1 5.7876 2.1688 8.4338 42 1 5.1341 -1.2962 -0.1173 43 1 3.8168 -2.4967 -0.1497 44 1 3.4033 1.4179 -0.7958 45 1 5.0419 0.7456 -1.0927 46 1 4.5546 1.7544 -3.2259 47 1 2.8187 1.3290 -3.1243 48 1 4.6890 2.6445 -5.7448 49 1 4.7541 -1.9615 -2.4503 50 1 3.0472 -2.0109 -2.9743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131703466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -91.744022 kcal Electronic energy + Delta-G solvation = -30759.379720 eV Core-core repulsion = 26594.324709 eV Total energy + Delta-G solvation = -4165.055010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66966 -39.80850 -38.79473 -36.36379 -34.64322 -34.52097 -33.99235 -33.08993 -31.34339 -29.77256 -28.97368 -28.13713 -26.51513 -25.57550 -23.90342 -22.61851 -21.96234 -20.62254 -20.14283 -19.60279 -18.88556 -17.82745 -17.04209 -17.01365 -16.97615 -16.50949 -16.38200 -15.77012 -15.39740 -14.80998 -14.55930 -14.33081 -14.23943 -14.11121 -13.71223 -13.37050 -13.24243 -12.92160 -12.60837 -12.43319 -12.37431 -12.23214 -12.21340 -11.98664 -11.70677 -11.57041 -11.51606 -11.03580 -11.02252 -10.90226 -10.85089 -10.47662 -10.32930 -10.23687 -10.06630 -10.05385 -10.00198 -9.68232 -9.58027 -9.46470 -8.61281 -8.34688 -6.80392 -5.61233 -3.02882 2.31778 2.62176 2.83004 3.19825 3.43608 3.48061 3.50431 3.82133 4.28008 4.44079 4.51786 4.64904 4.67146 4.70803 4.82893 5.02826 5.04471 5.06876 5.15869 5.16098 5.25274 5.26836 5.37004 5.49938 5.52353 5.53153 5.58383 5.76915 5.86042 5.87844 5.93871 5.98961 6.11906 6.15390 6.25621 6.37172 6.39701 6.55393 6.56279 6.62077 6.71038 6.93003 7.36136 7.56122 7.63488 7.67526 7.88943 7.91958 8.16844 8.38647 9.25236 9.85633 10.50660 11.42882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002490 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.800488 B =11241.902417 C =12134.152916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 H 0.067 0.933 4 C 0.079 3.921 5 N -0.613 5.613 6 C 0.514 3.486 7 O -0.533 6.533 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.142 4.142 11 C 0.513 3.487 12 N -0.861 5.861 13 O -0.536 6.536 14 C 0.098 3.902 15 C 0.096 3.904 16 C -0.165 4.165 17 C 0.160 3.840 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.154 3.846 28 O -0.352 6.352 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.014 0.986 48 H 0.252 0.748 49 H 0.039 0.961 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 -1.108 25.666 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.044 4.044 5 N -0.347 5.347 6 C 0.302 3.698 7 O -0.409 6.409 8 C -0.179 4.179 9 C -0.130 4.130 10 C -0.182 4.182 11 C 0.298 3.702 12 N -0.425 5.425 13 O -0.412 6.412 14 C -0.024 4.024 15 C 0.055 3.945 16 C -0.204 4.204 17 C 0.036 3.964 18 N -0.328 5.328 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.027 3.973 28 O -0.271 6.271 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.229 0.771 41 H 0.230 0.770 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.032 0.968 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.734 -1.353 24.902 26.424 hybrid contribution -0.053 0.246 -0.250 0.355 sum -8.787 -1.107 24.652 26.194 Atomic orbital electron populations 1.21698 0.92507 1.02978 1.02703 1.22455 0.95210 0.96192 0.85286 0.91535 1.22501 0.80352 1.01905 0.99661 1.48210 1.06647 1.63077 1.16810 1.20608 0.86816 0.77846 0.84534 1.90736 1.14630 1.54759 1.80802 1.21699 0.99890 1.02199 0.94108 1.21100 0.96691 1.02952 0.92245 1.21695 0.97295 1.03133 0.96071 1.20772 0.90750 0.76279 0.82369 1.43936 1.12400 1.67164 1.18989 1.90805 1.21786 1.52528 1.76056 1.22098 1.00746 0.97181 0.82423 1.22198 0.80632 0.96834 0.94803 1.23509 1.00202 0.94924 1.01749 1.21881 0.99865 0.90062 0.84620 1.44501 1.78257 1.00422 1.09617 1.19072 1.36585 0.93091 0.86084 0.90362 1.24793 1.02059 0.95240 0.98663 1.69805 1.55310 0.97017 1.34986 0.86047 0.78173 0.76931 0.84202 1.21667 1.21689 1.20660 1.21054 0.97300 0.92030 0.86875 1.87915 1.20604 1.76669 1.41921 0.91249 0.91154 0.91745 0.90582 0.89191 0.88928 0.88815 0.90302 0.90146 0.88616 0.88708 0.77146 0.76964 0.87894 0.91167 0.92226 0.91330 0.87697 0.96826 0.93770 0.94285 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16 2 C 0.07 0.84 3.17 -26.59 -0.08 0.76 16 3 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 4 C 0.08 0.79 5.82 -3.54 -0.02 0.77 16 5 N -0.61 -8.16 2.92 -172.87 -0.50 -8.67 16 6 C 0.51 7.01 7.71 -10.98 -0.08 6.92 16 7 O -0.53 -9.66 15.47 5.56 0.09 -9.57 16 8 C -0.14 -1.17 4.07 -27.88 -0.11 -1.29 16 9 C -0.09 -0.90 3.79 -26.73 -0.10 -1.00 16 10 C -0.14 -0.83 5.70 -27.89 -0.16 -0.99 16 11 C 0.51 4.38 8.10 -10.99 -0.09 4.29 16 12 N -0.86 -3.75 8.87 31.22 0.28 -3.47 16 13 O -0.54 -7.56 16.82 5.55 0.09 -7.47 16 14 C 0.10 1.57 5.13 -4.05 -0.02 1.55 16 15 C 0.10 1.77 0.83 -89.94 -0.07 1.69 16 16 C -0.17 -3.34 5.90 -24.87 -0.15 -3.49 16 17 C 0.16 4.06 5.89 -2.44 -0.01 4.05 16 18 N -0.60 -15.94 3.40 -170.24 -0.58 -16.52 16 19 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -27.50 10.09 55.49 0.56 -26.94 16 23 Si 0.92 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.15 3.35 6.61 -3.33 -0.02 3.32 16 28 O -0.35 -6.12 9.87 -35.23 -0.35 -6.47 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.59 6.05 -51.93 -0.31 0.28 16 34 H 0.09 0.53 8.00 -51.93 -0.42 0.12 16 35 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.40 0.37 8.83 -40.82 -0.36 0.01 16 41 H 0.40 1.60 8.93 -40.82 -0.36 1.23 16 42 H 0.10 1.84 6.87 -51.93 -0.36 1.48 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.10 5.98 -51.93 -0.31 0.79 16 45 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 46 H 0.11 2.98 5.88 -51.93 -0.31 2.68 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.04 0.82 7.79 -51.93 -0.40 0.42 16 50 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -38.10 391.83 -8.50 -46.60 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.14 Total: 0.38 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.83 Total: 8.71 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.25 Total: -55.60 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.17 Total: -23.50 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.10 -8.50 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131703466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.139 kcal (2) G-P(sol) polarization free energy of solvation -38.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds