Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.56055 * 2 1 4 4 C 1.52992 * 117.49976 * 145.68696 * 2 1 3 5 5 C 1.52996 * 117.49926 * 214.31277 * 2 1 3 6 6 H 1.09004 * 117.50304 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.50151 * 145.01807 * 5 2 1 8 8 O 1.21288 * 119.99858 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00258 * 179.97438 * 7 5 2 10 10 C 1.46498 * 120.00018 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09003 * 108.98447 * 58.85223 * 11 10 9 13 13 C 1.50741 * 108.99923 * 177.62604 * 11 10 9 14 14 N 1.47596 * 108.45755 * 213.99503 * 13 11 10 15 15 C 1.46896 * 111.00051 * 152.98683 * 14 13 11 16 16 C 1.50700 * 109.46942 * 194.49283 * 15 14 13 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46780 * 119.99924 * 23 21 19 26 26 H 1.48495 * 109.46909 * 239.99525 * 23 21 19 27 27 C 1.40465 * 114.42574 * 279.56630 * 14 13 11 28 28 C 1.54394 * 111.45175 * 61.24365 * 27 14 13 29 29 C 1.50719 * 109.13331 * 284.56928 * 28 27 14 30 30 O 1.43937 * 109.00119 * 299.99676 * 11 10 9 31 31 H 1.08996 * 109.47202 * 205.68462 * 1 2 3 32 32 H 1.08999 * 109.46978 * 325.69337 * 1 2 3 33 33 H 1.09000 * 109.47092 * 85.68779 * 1 2 3 34 34 H 1.08996 * 117.50016 * 0.02562 * 4 2 1 35 35 H 1.08994 * 117.49929 * 214.97607 * 4 2 1 36 36 H 0.97001 * 119.99512 * 0.02562 * 9 7 5 37 37 H 1.09003 * 109.47153 * 60.00071 * 10 9 7 38 38 H 1.09003 * 109.47334 * 300.00148 * 10 9 7 39 39 H 1.09003 * 109.64182 * 94.29988 * 13 11 10 40 40 H 1.09005 * 109.63342 * 333.68374 * 13 11 10 41 41 H 1.08994 * 109.47346 * 74.49588 * 15 14 13 42 42 H 1.08998 * 109.47279 * 314.49260 * 15 14 13 43 43 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 44 44 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.08582 * 181.75503 * 27 14 13 46 46 H 1.09003 * 109.08187 * 300.73531 * 27 14 13 47 47 H 1.08996 * 109.52483 * 44.46583 * 28 27 14 48 48 H 1.09000 * 109.52407 * 164.60085 * 28 27 14 49 49 H 1.08998 * 108.80976 * 212.39254 * 29 28 27 50 50 H 1.09004 * 108.80902 * 330.65838 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 1.6113 -1.8582 -1.2687 7 6 3.5293 -0.7811 -1.4609 8 8 3.9720 0.3465 -1.4009 9 7 4.1940 -1.7303 -2.1490 10 6 5.4510 -1.4000 -2.8250 11 6 5.9958 -2.6461 -3.5260 12 1 5.2557 -3.0018 -4.2428 13 6 7.2573 -2.2809 -4.2659 14 7 7.3282 -3.0916 -5.4972 15 6 8.1020 -2.4017 -6.5379 16 6 7.8618 -3.0688 -7.8677 17 8 7.1193 -4.0251 -7.9412 18 7 8.4719 -2.6027 -8.9755 19 6 8.2529 -3.2093 -10.1854 20 1 7.5918 -4.0608 -10.2507 21 6 8.8864 -2.7324 -11.3264 22 7 9.6912 -1.6966 -11.2467 23 14 8.5940 -3.5636 -12.9735 24 1 7.6535 -4.6988 -12.7951 25 1 8.0130 -2.5837 -13.9262 26 1 9.8836 -4.0692 -13.5085 27 6 7.7992 -4.4008 -5.3043 28 6 6.8771 -5.1988 -4.3573 29 6 7.1104 -4.7422 -2.9400 30 8 6.2281 -3.6724 -2.5439 31 1 -0.3633 -0.9261 0.4454 32 1 -0.3633 0.8489 0.5792 33 1 -0.3633 0.0773 -1.0248 34 1 1.6113 -1.8586 1.2679 35 1 3.1715 -0.8751 1.2682 36 1 3.8400 -2.6322 -2.1967 37 1 6.1770 -1.0497 -2.0913 38 1 5.2725 -0.6169 -3.5620 39 1 8.1238 -2.4907 -3.6387 40 1 7.2366 -1.2222 -4.5250 41 1 9.1632 -2.4500 -6.2938 42 1 7.7888 -1.3592 -6.5926 43 1 9.0659 -1.8382 -8.9167 44 1 10.1331 -1.3634 -12.0434 45 1 7.8458 -4.9084 -6.2678 46 1 8.8006 -4.3597 -4.8758 47 1 5.8363 -5.0242 -4.6297 48 1 7.1021 -6.2621 -4.4404 49 1 6.9604 -5.5881 -2.2691 50 1 8.1412 -4.4005 -2.8461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150085301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -84.486358 kcal Electronic energy + Delta-G solvation = -29607.763474 eV Core-core repulsion = 25443.023179 eV Total energy + Delta-G solvation = -4164.740294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36995 -39.83368 -38.20751 -37.13854 -35.98909 -34.98181 -33.89142 -32.60791 -31.30918 -30.39804 -29.11769 -27.28313 -26.77264 -25.06336 -24.08027 -22.94325 -21.30676 -20.98576 -20.59689 -19.97310 -19.22869 -17.95619 -17.65156 -17.29199 -16.51804 -16.11216 -15.87700 -15.28691 -15.16628 -14.99958 -14.59117 -14.48502 -14.29066 -14.17606 -13.77655 -13.63060 -13.53669 -13.25201 -13.02800 -13.00943 -12.70793 -12.39140 -12.35603 -12.09154 -11.76565 -11.62643 -11.60314 -11.39548 -11.20184 -11.04235 -10.90991 -10.69219 -10.42707 -10.41481 -10.35240 -10.26147 -9.97347 -9.58621 -9.50951 -9.20572 -8.52145 -8.02204 -7.85598 -6.45588 -3.86563 2.33089 2.91162 3.13433 3.24478 3.31213 3.50654 3.52078 3.84039 3.86408 4.19186 4.37647 4.43364 4.49509 4.62931 4.80290 4.87998 4.93211 4.97618 5.02895 5.03929 5.13482 5.21378 5.28851 5.34079 5.36074 5.36775 5.40968 5.46340 5.53276 5.57283 5.63235 5.67731 5.70321 5.80255 5.85844 5.91906 5.97585 6.01185 6.21674 6.26491 6.31977 6.38367 7.03213 7.21624 7.36650 7.51667 7.59297 8.02277 8.08369 8.56980 9.13999 9.49868 10.00940 10.72034 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002009 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.376024 B =13935.087386 C =14809.271477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.191 4.191 6 H 0.123 0.877 7 C 0.542 3.458 8 O -0.546 6.546 9 N -0.716 5.716 10 C 0.128 3.872 11 C 0.083 3.917 12 H 0.085 0.915 13 C 0.033 3.967 14 N -0.529 5.529 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.061 3.939 28 C -0.151 4.151 29 C 0.064 3.936 30 O -0.391 6.391 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.109 0.891 46 H 0.012 0.988 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -0.446 22.140 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.212 4.212 6 H 0.141 0.859 7 C 0.328 3.672 8 O -0.424 6.424 9 N -0.367 5.367 10 C 0.004 3.996 11 C 0.025 3.975 12 H 0.103 0.897 13 C -0.095 4.095 14 N -0.253 5.253 15 C -0.079 4.079 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.068 4.068 28 C -0.189 4.189 29 C -0.012 4.012 30 O -0.312 6.312 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.241 0.759 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.030 0.970 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.692 -0.247 21.979 24.443 hybrid contribution 1.244 -0.342 -0.974 1.616 sum -9.448 -0.590 21.005 23.040 Atomic orbital electron populations 1.21406 0.92212 1.02201 1.02293 1.22381 0.95231 0.95110 1.01423 0.86497 1.23095 1.03127 1.01533 0.90839 1.22299 0.97778 1.05349 0.95794 0.85865 1.19657 0.84675 0.84630 0.78247 1.90696 1.68792 1.21169 1.61693 1.45786 1.24246 1.13681 1.52996 1.21513 0.85375 0.95805 0.96899 1.22162 0.97522 0.87570 0.90218 0.89731 1.22344 0.96998 0.98863 0.91255 1.58590 1.57077 1.02330 1.07326 1.21849 0.95932 0.98542 0.91626 1.19741 0.85296 0.87277 0.85006 1.90480 1.40335 1.29671 1.85758 1.41883 1.41443 1.30055 1.06519 1.19743 1.26151 1.13372 0.83574 0.87834 1.25274 0.96242 0.96496 0.99954 1.69622 1.29739 1.24213 1.30606 0.85798 0.78175 0.79133 0.81228 1.19220 1.20719 1.20772 1.21378 0.93908 0.89349 1.02201 1.22037 1.02368 1.00350 0.94128 1.22395 0.93191 0.89257 0.96335 1.88211 1.68138 1.34157 1.40657 0.92346 0.91675 0.91864 0.87793 0.88300 0.75899 0.90954 0.89792 0.93139 0.89214 0.93283 0.89173 0.77468 0.91882 0.87343 0.97040 0.89781 0.90173 0.89660 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.19 37.16 0.38 -0.36 16 2 C -0.12 -0.99 5.92 -90.62 -0.54 -1.52 16 3 H 0.12 1.14 7.67 -51.93 -0.40 0.74 16 4 C -0.15 -1.07 9.88 -26.73 -0.26 -1.33 16 5 C -0.19 -1.62 5.91 -91.77 -0.54 -2.16 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 7 C 0.54 6.29 7.61 -10.98 -0.08 6.21 16 8 O -0.55 -8.36 16.26 5.55 0.09 -8.27 16 9 N -0.72 -7.42 5.44 -60.29 -0.33 -7.75 16 10 C 0.13 1.42 5.12 -4.04 -0.02 1.40 16 11 C 0.08 0.96 2.33 -27.87 -0.06 0.90 16 12 H 0.08 1.09 7.25 -51.93 -0.38 0.72 16 13 C 0.03 0.41 4.86 -4.57 -0.02 0.39 16 14 N -0.53 -8.23 3.79 -241.06 -0.91 -9.15 16 15 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 16 C 0.44 10.02 7.41 -10.98 -0.08 9.94 16 17 O -0.58 -14.93 13.91 5.55 0.08 -14.85 16 18 N -0.56 -13.90 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.06 0.93 4.64 -6.43 -0.03 0.90 16 28 C -0.15 -1.88 5.67 -27.14 -0.15 -2.04 16 29 C 0.06 0.70 6.26 36.02 0.23 0.92 16 30 O -0.39 -4.57 10.27 -35.23 -0.36 -4.94 16 31 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 3.53 8.34 -40.82 -0.34 3.19 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 39 H 0.05 0.60 6.85 -51.93 -0.36 0.25 16 40 H 0.09 1.00 7.08 -51.93 -0.37 0.63 16 41 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.09 1.38 7.68 -51.93 -0.40 0.98 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.11 2.07 5.56 -51.93 -0.29 1.78 16 46 H 0.01 0.17 7.63 -51.93 -0.40 -0.23 16 47 H 0.08 1.16 7.25 -51.93 -0.38 0.78 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.50 6.61 -51.93 -0.34 0.16 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -32.33 399.69 -9.34 -41.67 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -8.10 Total: 12.66 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.46 Total: 6.28 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.58 Total: -54.33 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.19 Total: -28.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.33 -9.34 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150085301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.818 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds