Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 115.55991 * 2 1 4 4 C 1.52995 * 117.49889 * 214.31410 * 2 1 3 5 5 C 1.52998 * 117.50191 * 145.68934 * 2 1 3 6 6 H 1.09001 * 117.51486 * 0.02562 * 5 2 1 7 7 C 1.50699 * 117.49753 * 214.98039 * 5 2 1 8 8 O 1.21282 * 120.00436 * 359.97438 * 7 5 2 9 9 N 1.34784 * 119.99518 * 179.97438 * 7 5 2 10 10 C 1.46498 * 119.99669 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47087 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.83097 * 59.99749 * 11 10 9 13 13 C 1.51045 * 109.83862 * 180.90653 * 11 10 9 14 14 N 1.47461 * 111.52101 * 213.48884 * 13 11 10 15 15 C 1.46898 * 111.00647 * 193.33244 * 14 13 11 16 16 C 1.50697 * 109.47153 * 193.29674 * 15 14 13 17 17 O 1.21293 * 120.00461 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99963 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00325 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00438 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00004 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99628 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47160 * 89.99820 * 23 21 19 25 25 H 1.48507 * 109.46796 * 209.99788 * 23 21 19 26 26 H 1.48499 * 109.47293 * 329.99465 * 23 21 19 27 27 C 1.48026 * 113.52280 * 319.19089 * 14 13 11 28 28 C 1.50989 * 113.13013 * 318.13546 * 27 14 13 29 29 C 1.54712 * 109.07620 * 92.04166 * 28 27 14 30 30 O 1.36611 * 110.79498 * 286.65568 * 29 28 27 31 31 H 1.08990 * 109.47180 * 274.31021 * 1 2 3 32 32 H 1.08995 * 109.47416 * 34.31516 * 1 2 3 33 33 H 1.09001 * 109.46832 * 154.30807 * 1 2 3 34 34 H 1.09009 * 117.50032 * 145.02089 * 4 2 1 35 35 H 1.08997 * 117.52320 * 359.97438 * 4 2 1 36 36 H 0.96998 * 120.00204 * 0.02562 * 9 7 5 37 37 H 1.09003 * 109.47394 * 59.99625 * 10 9 7 38 38 H 1.09002 * 109.47229 * 299.99860 * 10 9 7 39 39 H 1.08992 * 109.06765 * 334.13767 * 13 11 10 40 40 H 1.09005 * 109.06156 * 93.06579 * 13 11 10 41 41 H 1.09004 * 109.46916 * 313.29529 * 15 14 13 42 42 H 1.09002 * 109.47145 * 73.29413 * 15 14 13 43 43 H 0.97008 * 120.00131 * 359.97438 * 18 16 15 44 44 H 0.96998 * 119.99583 * 180.02562 * 22 21 19 45 45 H 1.08999 * 108.75464 * 197.19515 * 27 14 13 46 46 H 1.08997 * 108.66019 * 79.01244 * 27 14 13 47 47 H 1.08993 * 109.53627 * 332.16334 * 28 27 14 48 48 H 1.08996 * 109.53536 * 211.91875 * 28 27 14 49 49 H 1.09002 * 109.21220 * 166.31711 * 29 28 27 50 50 H 1.08997 * 109.17589 * 46.97203 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8589 1.2680 7 6 3.5293 -0.7810 1.4608 8 8 3.9720 0.3465 1.4008 9 7 4.1935 -1.7301 2.1497 10 6 5.4500 -1.3995 2.8266 11 6 5.9944 -2.6453 3.5284 12 1 6.1758 -3.4324 2.7965 13 6 7.2789 -2.3082 4.2479 14 7 8.2152 -3.4475 4.2456 15 6 9.3104 -3.2310 5.2005 16 6 10.4051 -4.2347 4.9452 17 8 10.2851 -5.0499 4.0552 18 7 11.5176 -4.2265 5.7060 19 6 12.5138 -5.1391 5.4736 20 1 12.4069 -5.8651 4.6810 21 6 13.6610 -5.1304 6.2576 22 7 14.6157 -6.0056 6.0351 23 14 13.8455 -3.8753 7.6288 24 1 13.2890 -4.4324 8.8879 25 1 15.2839 -3.5594 7.8204 26 1 13.1105 -2.6364 7.2682 27 6 7.5577 -4.7529 4.4797 28 6 6.5032 -4.7009 5.5590 29 6 5.1300 -4.4052 4.9105 30 8 5.0534 -3.1012 4.5104 31 1 -0.3633 0.0772 1.0247 32 1 -0.3634 0.8487 -0.5793 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1716 -0.8751 -1.2684 35 1 1.6116 -1.8588 -1.2681 36 1 3.8397 -2.6319 2.1974 37 1 5.2708 -0.6162 3.5632 38 1 6.1766 -1.0493 2.0934 39 1 7.7498 -1.4571 3.7561 40 1 7.0495 -2.0397 5.2791 41 1 9.7058 -2.2227 5.0771 42 1 8.9357 -3.3525 6.2168 43 1 11.6138 -3.5742 6.4177 44 1 15.4163 -5.9997 6.5826 45 1 8.3166 -5.4811 4.7662 46 1 7.0920 -5.0805 3.5503 47 1 6.7480 -3.9118 6.2700 48 1 6.4632 -5.6596 6.0761 49 1 4.3406 -4.6051 5.6350 50 1 4.9955 -5.0543 4.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150091429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -78.362279 kcal Electronic energy + Delta-G solvation = -29624.469317 eV Core-core repulsion = 25459.994582 eV Total energy + Delta-G solvation = -4164.474735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62607 -40.01254 -38.45667 -37.23639 -36.02866 -35.24177 -33.91755 -32.66218 -31.70330 -30.47871 -29.20287 -27.43692 -26.45683 -25.28879 -23.97239 -23.16650 -21.78348 -21.26233 -20.57420 -19.93495 -19.29218 -18.19939 -17.83939 -16.98836 -16.91359 -16.31524 -15.94636 -15.63480 -15.37316 -15.21116 -14.80710 -14.64772 -14.38260 -14.23943 -13.73625 -13.63251 -13.45724 -13.21905 -13.01092 -12.88800 -12.79783 -12.53698 -12.43249 -12.32455 -11.99912 -11.88404 -11.81194 -11.64103 -11.37451 -11.16078 -10.92064 -10.77191 -10.61411 -10.49708 -10.42098 -10.09358 -9.99373 -9.72709 -9.53609 -9.33400 -8.57326 -8.19337 -7.99059 -6.32891 -3.84301 2.22836 2.79231 3.01417 3.05169 3.13802 3.32372 3.43645 3.71461 3.82489 4.08663 4.27752 4.35406 4.39986 4.50386 4.67342 4.75889 4.76979 4.78636 4.87033 4.90714 5.01976 5.16114 5.19131 5.20956 5.30467 5.32967 5.33658 5.38310 5.48548 5.54914 5.56005 5.58013 5.63279 5.70874 5.75404 5.76759 5.83368 5.90464 5.91265 6.09379 6.14188 6.37543 7.07520 7.12840 7.22830 7.38364 7.56567 7.96786 8.12411 8.58354 8.93352 9.40668 9.81320 10.80183 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001898 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.868286 B =14750.166102 C =15024.659890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.192 4.192 6 H 0.123 0.877 7 C 0.543 3.457 8 O -0.543 6.543 9 N -0.719 5.719 10 C 0.132 3.868 11 C 0.084 3.916 12 H 0.083 0.917 13 C 0.034 3.966 14 N -0.519 5.519 15 C 0.045 3.955 16 C 0.453 3.547 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.050 3.950 28 C -0.196 4.196 29 C 0.077 3.923 30 O -0.381 6.381 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.175 9.137 -5.488 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.329 3.671 8 O -0.420 6.420 9 N -0.370 5.370 10 C 0.008 3.992 11 C 0.026 3.974 12 H 0.101 0.899 13 C -0.094 4.094 14 N -0.243 5.243 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.078 4.078 28 C -0.236 4.236 29 C -0.001 4.001 30 O -0.300 6.300 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -26.622 9.397 -6.457 28.960 hybrid contribution 0.251 0.170 2.141 2.162 sum -26.370 9.567 -4.316 28.382 Atomic orbital electron populations 1.21405 0.92196 1.02271 1.02243 1.22384 0.95244 0.95114 1.01336 0.86461 1.23120 1.03240 1.01548 0.90718 1.22300 0.97733 1.05453 0.95854 0.85886 1.19654 0.84637 0.84594 0.78199 1.90705 1.68598 1.21067 1.61630 1.45771 1.24595 1.13723 1.52905 1.21397 0.85793 0.96066 0.95944 1.22177 0.88112 0.96562 0.90508 0.89916 1.22385 0.92181 0.94711 1.00142 1.61752 1.10157 1.01235 1.51196 1.21860 0.92528 1.00145 0.94157 1.19622 0.83770 0.87627 0.85154 1.90547 1.79596 1.40855 1.33092 1.42218 1.17364 1.31961 1.31520 1.19421 0.94782 1.11124 1.18020 0.86279 1.25033 0.95589 0.97388 0.98102 1.69621 1.07738 1.34960 1.39784 0.86682 0.78739 0.81357 0.82675 1.19690 1.20144 1.19478 1.22119 0.96624 0.91813 0.97217 1.22947 0.97116 1.03112 1.00403 1.21862 0.96944 0.83256 0.98047 1.86429 1.56423 1.28139 1.58982 0.91916 0.91626 0.92323 0.88178 0.87724 0.76186 0.90437 0.89421 0.89588 0.93214 0.89246 0.93302 0.79740 0.91613 0.88548 0.91362 0.91178 0.90314 0.89011 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 2 C -0.12 -0.88 5.92 -90.62 -0.54 -1.42 16 3 H 0.12 1.04 7.67 -51.93 -0.40 0.65 16 4 C -0.15 -0.95 9.88 -26.73 -0.26 -1.22 16 5 C -0.19 -1.43 5.91 -91.77 -0.54 -1.97 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.54 5.68 7.61 -10.98 -0.08 5.60 16 8 O -0.54 -7.76 16.26 5.56 0.09 -7.67 16 9 N -0.72 -6.44 5.46 -60.29 -0.33 -6.76 16 10 C 0.13 1.30 5.16 -4.04 -0.02 1.27 16 11 C 0.08 0.85 2.35 -27.72 -0.07 0.79 16 12 H 0.08 0.89 6.77 -51.93 -0.35 0.54 16 13 C 0.03 0.40 4.64 -4.50 -0.02 0.38 16 14 N -0.52 -7.89 4.48 -237.11 -1.06 -8.96 16 15 C 0.04 0.73 5.34 -4.98 -0.03 0.71 16 16 C 0.45 10.06 7.25 -10.99 -0.08 9.98 16 17 O -0.56 -14.55 14.18 5.55 0.08 -14.47 16 18 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 19 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 21 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 22 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 23 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C 0.05 0.73 4.59 -4.21 -0.02 0.71 16 28 C -0.20 -2.25 5.63 -26.84 -0.15 -2.40 16 29 C 0.08 0.72 6.43 38.06 0.24 0.97 16 30 O -0.38 -3.92 9.42 -21.72 -0.20 -4.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 34 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 36 H 0.40 2.82 8.38 -40.82 -0.34 2.48 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.09 0.95 7.73 -51.93 -0.40 0.54 16 40 H 0.05 0.58 7.13 -51.93 -0.37 0.21 16 41 H 0.09 1.30 8.04 -51.93 -0.42 0.89 16 42 H 0.05 0.72 7.58 -51.93 -0.39 0.33 16 43 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.10 1.76 5.86 -51.93 -0.30 1.45 16 46 H 0.07 0.96 6.53 -51.93 -0.34 0.62 16 47 H 0.07 0.85 6.69 -51.93 -0.35 0.50 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.04 0.35 7.72 -51.93 -0.40 -0.05 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -34.09 396.50 -8.95 -43.04 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.07 Total: 11.68 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.43 Total: 5.50 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.67 Total: -54.48 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.09 -8.95 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150091429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.327 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds