Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 115.55991 * 2 1 4 4 C 1.52995 * 117.49889 * 214.31410 * 2 1 3 5 5 C 1.52998 * 117.50191 * 145.68934 * 2 1 3 6 6 H 1.09001 * 117.51486 * 0.02562 * 5 2 1 7 7 C 1.50699 * 117.49753 * 214.98039 * 5 2 1 8 8 O 1.21282 * 120.00436 * 359.97438 * 7 5 2 9 9 N 1.34784 * 119.99518 * 179.97438 * 7 5 2 10 10 C 1.46498 * 119.99669 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47087 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.83097 * 59.99749 * 11 10 9 13 13 C 1.51045 * 109.83862 * 180.90653 * 11 10 9 14 14 N 1.47461 * 111.52101 * 213.48884 * 13 11 10 15 15 C 1.46898 * 111.00647 * 193.33244 * 14 13 11 16 16 C 1.50697 * 109.47153 * 193.29674 * 15 14 13 17 17 O 1.21293 * 120.00461 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99963 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00325 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00438 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00004 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99628 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47160 * 89.99820 * 23 21 19 25 25 H 1.48507 * 109.46796 * 209.99788 * 23 21 19 26 26 H 1.48499 * 109.47293 * 329.99465 * 23 21 19 27 27 C 1.48026 * 113.52280 * 319.19089 * 14 13 11 28 28 C 1.50989 * 113.13013 * 318.13546 * 27 14 13 29 29 C 1.54712 * 109.07620 * 92.04166 * 28 27 14 30 30 O 1.36611 * 110.79498 * 286.65568 * 29 28 27 31 31 H 1.08990 * 109.47180 * 274.31021 * 1 2 3 32 32 H 1.08995 * 109.47416 * 34.31516 * 1 2 3 33 33 H 1.09001 * 109.46832 * 154.30807 * 1 2 3 34 34 H 1.09009 * 117.50032 * 145.02089 * 4 2 1 35 35 H 1.08997 * 117.52320 * 359.97438 * 4 2 1 36 36 H 0.96998 * 120.00204 * 0.02562 * 9 7 5 37 37 H 1.09003 * 109.47394 * 59.99625 * 10 9 7 38 38 H 1.09002 * 109.47229 * 299.99860 * 10 9 7 39 39 H 1.08992 * 109.06765 * 334.13767 * 13 11 10 40 40 H 1.09005 * 109.06156 * 93.06579 * 13 11 10 41 41 H 1.09004 * 109.46916 * 313.29529 * 15 14 13 42 42 H 1.09002 * 109.47145 * 73.29413 * 15 14 13 43 43 H 0.97008 * 120.00131 * 359.97438 * 18 16 15 44 44 H 0.96998 * 119.99583 * 180.02562 * 22 21 19 45 45 H 1.08999 * 108.75464 * 197.19515 * 27 14 13 46 46 H 1.08997 * 108.66019 * 79.01244 * 27 14 13 47 47 H 1.08993 * 109.53627 * 332.16334 * 28 27 14 48 48 H 1.08996 * 109.53536 * 211.91875 * 28 27 14 49 49 H 1.09002 * 109.21220 * 166.31711 * 29 28 27 50 50 H 1.08997 * 109.17589 * 46.97203 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8589 1.2680 7 6 3.5293 -0.7810 1.4608 8 8 3.9720 0.3465 1.4008 9 7 4.1935 -1.7301 2.1497 10 6 5.4500 -1.3995 2.8266 11 6 5.9944 -2.6453 3.5284 12 1 6.1758 -3.4324 2.7965 13 6 7.2789 -2.3082 4.2479 14 7 8.2152 -3.4475 4.2456 15 6 9.3104 -3.2310 5.2005 16 6 10.4051 -4.2347 4.9452 17 8 10.2851 -5.0499 4.0552 18 7 11.5176 -4.2265 5.7060 19 6 12.5138 -5.1391 5.4736 20 1 12.4069 -5.8651 4.6810 21 6 13.6610 -5.1304 6.2576 22 7 14.6157 -6.0056 6.0351 23 14 13.8455 -3.8753 7.6288 24 1 13.2890 -4.4324 8.8879 25 1 15.2839 -3.5594 7.8204 26 1 13.1105 -2.6364 7.2682 27 6 7.5577 -4.7529 4.4797 28 6 6.5032 -4.7009 5.5590 29 6 5.1300 -4.4052 4.9105 30 8 5.0534 -3.1012 4.5104 31 1 -0.3633 0.0772 1.0247 32 1 -0.3634 0.8487 -0.5793 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1716 -0.8751 -1.2684 35 1 1.6116 -1.8588 -1.2681 36 1 3.8397 -2.6319 2.1974 37 1 5.2708 -0.6162 3.5632 38 1 6.1766 -1.0493 2.0934 39 1 7.7498 -1.4571 3.7561 40 1 7.0495 -2.0397 5.2791 41 1 9.7058 -2.2227 5.0771 42 1 8.9357 -3.3525 6.2168 43 1 11.6138 -3.5742 6.4177 44 1 15.4163 -5.9997 6.5826 45 1 8.3166 -5.4811 4.7662 46 1 7.0920 -5.0805 3.5503 47 1 6.7480 -3.9118 6.2700 48 1 6.4632 -5.6596 6.0761 49 1 4.3406 -4.6051 5.6350 50 1 4.9955 -5.0543 4.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150091429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -105.314071 kcal Electronic energy + Delta-G solvation = -29625.638034 eV Core-core repulsion = 25459.994582 eV Total energy + Delta-G solvation = -4165.643452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53600 -40.88501 -40.08961 -37.86588 -37.24300 -36.09219 -35.88290 -33.77418 -33.53360 -31.56620 -29.74509 -28.64154 -27.43441 -26.61697 -25.28276 -23.98294 -22.68907 -21.90539 -21.54759 -21.12956 -20.75861 -20.02564 -18.55818 -18.07407 -17.83196 -17.35377 -17.20397 -16.79406 -16.66614 -16.21074 -16.08453 -15.69797 -15.26983 -15.16061 -15.14718 -14.94387 -14.58059 -14.13685 -14.10413 -13.92692 -13.80535 -13.64464 -13.53407 -13.37869 -13.13585 -12.90912 -12.89792 -12.63967 -12.43222 -12.32945 -12.27898 -11.99293 -11.93797 -11.52972 -11.33518 -11.28755 -11.07101 -10.84690 -10.55637 -10.37538 -10.22766 -10.13990 -9.18370 -8.41804 -6.02300 1.29474 1.34051 1.43219 1.46978 1.95347 2.05118 2.21962 2.44496 2.67629 2.87339 3.14431 3.18376 3.63675 3.68288 3.80175 3.84143 3.86548 3.91013 3.96418 4.06327 4.18385 4.23770 4.27943 4.35989 4.43631 4.45064 4.52059 4.55828 4.61812 4.67750 4.78018 4.80878 4.88587 4.90710 4.96206 5.01802 5.02537 5.06967 5.22815 5.25132 5.36328 5.44566 5.52332 5.86290 5.98533 6.09499 6.51408 6.52950 6.59321 6.88052 7.21119 7.39532 7.96458 8.75759 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001898 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.868286 B =14750.166102 C =15024.659890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 H 0.092 0.908 4 C -0.139 4.139 5 C -0.194 4.194 6 H 0.149 0.851 7 C 0.537 3.463 8 O -0.588 6.588 9 N -0.709 5.709 10 C 0.137 3.863 11 C 0.095 3.905 12 H 0.078 0.922 13 C 0.036 3.964 14 N -0.540 5.540 15 C 0.057 3.943 16 C 0.453 3.547 17 O -0.604 6.604 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.232 1.232 27 C 0.055 3.945 28 C -0.189 4.189 29 C 0.079 3.921 30 O -0.381 6.381 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.115 0.885 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.881 10.957 -3.937 32.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.215 4.215 6 H 0.167 0.833 7 C 0.325 3.675 8 O -0.469 6.469 9 N -0.360 5.360 10 C 0.013 3.987 11 C 0.037 3.963 12 H 0.096 0.904 13 C -0.091 4.091 14 N -0.265 5.265 15 C -0.074 4.074 16 C 0.240 3.760 17 O -0.488 6.488 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.156 1.156 27 C -0.072 4.072 28 C -0.228 4.228 29 C 0.001 3.999 30 O -0.300 6.300 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.133 0.867 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -29.370 11.203 -4.906 31.814 hybrid contribution 1.073 -0.504 1.529 1.935 sum -28.297 10.699 -3.376 30.440 Atomic orbital electron populations 1.21396 0.90357 1.03291 1.02573 1.22407 0.96588 0.94117 1.01832 0.88972 1.23199 1.02924 1.01538 0.89986 1.22367 0.96496 1.06221 0.96399 0.83319 1.20221 0.85407 0.84018 0.77863 1.90683 1.69949 1.22953 1.63327 1.45713 1.24087 1.14110 1.52107 1.21268 0.86088 0.95663 0.95711 1.22006 0.87569 0.96435 0.90264 0.90382 1.22444 0.92162 0.93493 1.01030 1.61684 1.11066 1.02425 1.51346 1.21758 0.90931 0.98987 0.95772 1.20824 0.84183 0.87499 0.83446 1.90530 1.80536 1.42839 1.34863 1.42045 1.16942 1.31849 1.32640 1.18991 0.97149 1.11879 1.17557 0.92598 1.26080 0.94245 0.99869 1.01066 1.69802 1.08656 1.37423 1.41601 0.85394 0.79135 0.79041 0.78145 1.18187 1.20048 1.15577 1.21985 0.96152 0.90753 0.98347 1.22874 0.97248 1.03426 0.99273 1.21949 0.96111 0.82999 0.98818 1.86447 1.56112 1.28636 1.58792 0.91816 0.91263 0.90765 0.89475 0.85157 0.74821 0.90966 0.89916 0.88654 0.92325 0.86467 0.90713 0.77625 0.91184 0.92918 0.91343 0.91351 0.89772 0.86718 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.19 71.98 0.73 -0.24 16 2 C -0.13 -1.75 5.92 -10.80 -0.06 -1.81 16 3 H 0.09 1.70 7.67 -2.38 -0.02 1.68 16 4 C -0.14 -1.55 9.88 30.59 0.30 -1.25 16 5 C -0.19 -2.54 5.91 -11.54 -0.07 -2.60 16 6 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 7 C 0.54 10.77 7.61 87.66 0.67 11.44 16 8 O -0.59 -16.97 16.26 -3.03 -0.05 -17.02 16 9 N -0.71 -11.56 5.46 -463.05 -2.53 -14.09 16 10 C 0.14 2.49 5.16 86.38 0.45 2.94 16 11 C 0.09 1.73 2.35 29.96 0.07 1.80 16 12 H 0.08 1.54 6.77 -2.39 -0.02 1.53 16 13 C 0.04 0.77 4.64 85.56 0.40 1.16 16 14 N -0.54 -15.71 4.48 -904.07 -4.05 -19.76 16 15 C 0.06 1.75 5.34 85.56 0.46 2.20 16 16 C 0.45 20.30 7.25 87.66 0.64 20.93 16 17 O -0.60 -32.92 14.18 -3.07 -0.04 -32.96 16 18 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 19 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 22 N -0.93 -56.29 13.96 21.67 0.30 -55.99 16 23 Si 0.96 38.81 27.74 68.60 1.90 40.71 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 27 C 0.06 1.59 4.59 85.43 0.39 1.98 16 28 C -0.19 -3.94 5.63 30.52 0.17 -3.77 16 29 C 0.08 1.25 6.43 72.57 0.47 1.71 16 30 O -0.38 -6.70 9.42 -100.63 -0.95 -7.65 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.39 7.90 -2.39 -0.02 0.37 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.13 0.78 8.05 -2.39 -0.02 0.76 16 36 H 0.42 4.83 8.38 -92.71 -0.78 4.05 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 39 H 0.10 1.86 7.73 -2.39 -0.02 1.84 16 40 H 0.06 1.17 7.13 -2.38 -0.02 1.16 16 41 H 0.12 3.01 8.04 -2.39 -0.02 2.99 16 42 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 43 H 0.39 15.19 5.76 -92.70 -0.53 14.66 16 44 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.05 1.98 5.86 -2.39 -0.01 1.97 16 46 H 0.07 1.91 6.53 -2.39 -0.02 1.90 16 47 H 0.07 1.47 6.69 -2.39 -0.02 1.45 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.05 0.71 7.72 -2.39 -0.02 0.70 16 Total: -1.00 -80.79 396.50 -1.45 -82.24 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.41 Total: 38.01 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.93 Total: 15.96 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -7.84 Total: -119.29 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -1.04 Total: -57.64 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -80.79 -1.45 -82.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150091429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.070 kcal (2) G-P(sol) polarization free energy of solvation -80.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds