Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 115.54979 * 2 1 4 4 C 1.53010 * 117.49741 * 214.29651 * 2 1 3 5 5 C 1.52999 * 117.50034 * 145.67533 * 2 1 3 6 6 H 1.08998 * 117.49704 * 359.97386 * 5 2 1 7 7 C 1.50696 * 117.49907 * 214.97996 * 5 2 1 8 8 O 1.21283 * 120.00252 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00154 * 180.02562 * 7 5 2 10 10 C 1.46497 * 119.99871 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.46974 * 179.97438 * 10 9 7 12 12 H 1.09001 * 108.70860 * 306.76112 * 11 10 9 13 13 C 1.54170 * 108.74631 * 188.62594 * 11 10 9 14 14 N 1.48525 * 111.93543 * 197.82483 * 13 11 10 15 15 C 1.46905 * 110.99792 * 192.46684 * 14 13 11 16 16 C 1.50696 * 109.46937 * 194.17961 * 15 14 13 17 17 O 1.21292 * 120.00259 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99761 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99976 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99677 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99614 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00221 * 23 21 19 27 27 C 1.44064 * 114.19116 * 318.85693 * 14 13 11 28 28 C 1.54012 * 108.26815 * 93.30879 * 27 14 13 29 29 C 1.46290 * 112.02510 * 280.50063 * 28 27 14 30 30 O 1.39994 * 108.74384 * 65.00181 * 11 10 9 31 31 H 1.08999 * 109.47452 * 274.32810 * 1 2 3 32 32 H 1.09003 * 109.47613 * 34.32666 * 1 2 3 33 33 H 1.09006 * 109.47552 * 154.32427 * 1 2 3 34 34 H 1.09000 * 117.49692 * 145.02098 * 4 2 1 35 35 H 1.08995 * 117.49821 * 359.97438 * 4 2 1 36 36 H 0.97005 * 119.99645 * 359.97438 * 9 7 5 37 37 H 1.09000 * 109.47186 * 60.00067 * 10 9 7 38 38 H 1.08994 * 109.47319 * 299.99349 * 10 9 7 39 39 H 1.09000 * 108.98452 * 77.19749 * 13 11 10 40 40 H 1.09000 * 108.98725 * 318.45764 * 13 11 10 41 41 H 1.09000 * 109.47082 * 74.18046 * 15 14 13 42 42 H 1.09004 * 109.47143 * 314.18001 * 15 14 13 43 43 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 44 44 H 0.97000 * 119.99719 * 359.97438 * 22 21 19 45 45 H 1.09000 * 109.69954 * 213.00148 * 27 14 13 46 46 H 1.09002 * 109.70282 * 333.61313 * 27 14 13 47 47 H 1.08995 * 108.96973 * 41.15531 * 28 27 14 48 48 H 1.09002 * 108.96805 * 159.84820 * 28 27 14 49 49 H 1.09000 * 109.10231 * 180.14311 * 29 28 27 50 50 H 1.09001 * 109.10015 * 299.24034 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7648 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5292 -0.7807 1.4610 8 8 3.9720 0.3468 1.4007 9 7 4.1940 -1.7298 2.1493 10 6 5.4510 -1.3993 2.8252 11 6 5.9953 -2.6449 3.5275 12 1 5.2147 -3.0537 4.1691 13 6 7.1924 -2.2341 4.4078 14 7 8.0317 -3.4007 4.7825 15 6 8.9808 -3.0464 5.8464 16 6 10.0323 -4.1199 5.9594 17 8 9.9951 -5.0850 5.2257 18 7 11.0147 -4.0072 6.8752 19 6 11.9711 -4.9841 6.9785 20 1 11.9375 -5.8438 6.3257 21 6 12.9836 -4.8680 7.9230 22 7 13.0242 -3.8222 8.7177 23 14 14.2870 -6.1987 8.0632 24 1 15.2461 -5.8408 9.1390 25 1 13.6387 -7.4943 8.3896 26 1 15.0122 -6.3192 6.7729 27 6 7.2815 -4.5800 5.1316 28 6 7.1279 -5.4463 3.8675 29 6 6.0658 -4.9536 2.9905 30 8 6.3265 -3.5992 2.5583 31 1 -0.3634 0.0776 1.0247 32 1 -0.3634 0.8487 -0.5795 33 1 -0.3634 -0.9262 -0.4453 34 1 3.1715 -0.8756 -1.2681 35 1 1.6112 -1.8591 -1.2675 36 1 3.8400 -2.6317 2.1972 37 1 5.2724 -0.6161 3.5619 38 1 6.1770 -1.0492 2.0914 39 1 6.8188 -1.7599 5.3154 40 1 7.8051 -1.5173 3.8612 41 1 8.4486 -2.9580 6.7935 42 1 9.4567 -2.0954 5.6068 43 1 11.0447 -3.2352 7.4618 44 1 12.3475 -3.1310 8.6446 45 1 7.8148 -5.1410 5.8991 46 1 6.2974 -4.2931 5.5023 47 1 8.0700 -5.4433 3.3194 48 1 6.8960 -6.4690 4.1649 49 1 5.9969 -5.6003 2.1157 50 1 5.1182 -4.9794 3.5285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150091430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -82.364237 kcal Electronic energy + Delta-G solvation = -29627.191650 eV Core-core repulsion = 25462.543378 eV Total energy + Delta-G solvation = -4164.648272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47362 -39.79355 -38.35110 -37.22217 -35.95471 -35.11954 -34.14420 -32.93606 -31.14074 -30.31001 -29.17603 -27.32708 -26.60584 -24.97008 -23.96063 -22.80289 -21.65129 -21.23547 -20.68157 -20.05573 -19.51434 -17.89923 -17.82065 -17.12939 -16.75356 -16.14698 -15.97399 -15.51634 -15.26599 -14.94386 -14.69077 -14.42841 -14.24153 -14.19633 -13.84241 -13.63218 -13.47940 -13.38616 -13.22679 -13.01244 -12.85511 -12.54571 -12.43487 -12.28892 -11.83958 -11.80862 -11.23466 -11.21217 -11.00364 -10.84660 -10.78775 -10.70947 -10.54369 -10.51238 -10.20711 -10.12520 -9.85103 -9.65407 -9.50257 -9.35353 -8.46162 -8.02015 -7.86979 -6.74301 -3.87380 2.21595 2.76652 3.31294 3.34906 3.42079 3.54839 3.55656 3.79194 3.87065 4.25413 4.30035 4.33774 4.39036 4.68664 4.71565 4.78824 4.81616 4.88580 4.89175 4.97251 5.11020 5.19753 5.23472 5.27064 5.29166 5.31264 5.32462 5.37762 5.51078 5.56602 5.58143 5.61462 5.67283 5.74003 5.81560 5.88725 5.90035 5.97918 6.04925 6.13033 6.24435 6.65303 7.10758 7.19985 7.22952 7.47268 7.81744 7.95101 8.08980 8.61638 8.81804 9.48957 9.90045 10.69151 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.001809 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.422201 B =15475.759104 C =15975.437837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.121 3.879 11 C 0.086 3.914 12 H 0.057 0.943 13 C 0.043 3.957 14 N -0.523 5.523 15 C 0.050 3.950 16 C 0.446 3.554 17 O -0.567 6.567 18 N -0.578 5.578 19 C -0.381 4.381 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.902 5.902 23 Si 1.091 2.909 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.076 3.924 28 C -0.147 4.147 29 C 0.068 3.932 30 O -0.356 6.356 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.402 0.598 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.375 0.625 44 H 0.261 0.739 45 H 0.082 0.918 46 H 0.023 0.977 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 4.319 -12.458 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.419 6.419 9 N -0.370 5.370 10 C -0.003 4.003 11 C 0.026 3.974 12 H 0.075 0.925 13 C -0.085 4.085 14 N -0.247 5.247 15 C -0.082 4.082 16 C 0.231 3.769 17 O -0.450 6.450 18 N -0.216 5.216 19 C -0.510 4.510 20 H 0.116 0.884 21 C -0.212 4.212 22 N -0.541 5.541 23 Si 0.917 3.083 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.052 4.052 28 C -0.185 4.185 29 C -0.008 4.008 30 O -0.274 6.274 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.041 0.959 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.647 3.925 -12.722 26.271 hybrid contribution -1.952 0.561 0.667 2.137 sum -24.599 4.486 -12.056 27.759 Atomic orbital electron populations 1.21407 0.92188 1.02289 1.02221 1.22389 0.95230 0.95119 1.01369 0.86460 1.23116 1.03225 1.01478 0.90678 1.22293 0.97696 1.05434 0.95956 0.85964 1.19657 0.84681 0.84623 0.78149 1.90706 1.68710 1.21152 1.61356 1.45785 1.24320 1.13494 1.53421 1.21533 0.85461 0.96087 0.97255 1.21964 0.95333 0.89843 0.90237 0.92466 1.23007 0.94400 0.93304 0.97792 1.60064 1.19066 1.03842 1.41769 1.21855 0.94360 0.99195 0.92744 1.19656 0.84399 0.88762 0.84055 1.90521 1.76370 1.33381 1.44745 1.41943 1.24888 1.22209 1.32602 1.20515 1.06135 1.03112 1.21258 0.88360 1.26487 0.99875 1.02027 0.92828 1.70902 1.35972 1.09379 1.37869 0.83135 0.74900 0.73627 0.76627 1.20443 1.21092 1.21015 1.21635 0.94830 0.91253 0.97520 1.21093 1.01560 0.98628 0.97237 1.21717 0.96886 0.83167 0.99041 1.87850 1.86732 1.14776 1.38036 0.91943 0.91605 0.92320 0.88159 0.87716 0.76409 0.90188 0.90111 0.93957 0.89956 0.93684 0.89485 0.79249 0.92800 0.89974 0.95871 0.88794 0.91262 0.89354 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.19 37.15 0.38 -0.24 16 2 C -0.12 -0.88 5.92 -90.62 -0.54 -1.42 16 3 H 0.12 1.05 7.67 -51.93 -0.40 0.65 16 4 C -0.15 -0.97 9.88 -26.72 -0.26 -1.23 16 5 C -0.19 -1.43 5.91 -91.77 -0.54 -1.97 16 6 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 7 C 0.54 5.75 7.61 -10.99 -0.08 5.67 16 8 O -0.54 -7.86 16.26 5.56 0.09 -7.77 16 9 N -0.72 -6.57 5.48 -60.30 -0.33 -6.90 16 10 C 0.12 1.24 5.18 -4.04 -0.02 1.22 16 11 C 0.09 0.93 2.00 -26.12 -0.05 0.88 16 12 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 13 C 0.04 0.54 5.18 -2.31 -0.01 0.53 16 14 N -0.52 -8.49 3.90 -235.57 -0.92 -9.41 16 15 C 0.05 0.87 5.34 -4.97 -0.03 0.84 16 16 C 0.45 10.37 7.14 -10.99 -0.08 10.29 16 17 O -0.57 -14.98 14.47 5.55 0.08 -14.90 16 18 N -0.58 -14.44 5.28 -10.96 -0.06 -14.50 16 19 C -0.38 -10.66 9.68 -14.93 -0.14 -10.80 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 21 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 22 N -0.90 -25.28 13.68 55.50 0.76 -24.52 16 23 Si 1.09 24.29 29.92 -169.99 -5.09 19.20 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.08 1.17 4.48 -4.81 -0.02 1.15 16 28 C -0.15 -2.09 5.62 -29.39 -0.17 -2.25 16 29 C 0.07 0.75 6.21 33.97 0.21 0.96 16 30 O -0.36 -4.47 10.00 -32.91 -0.33 -4.80 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 36 H 0.40 2.81 8.45 -40.82 -0.35 2.46 16 37 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.47 8.04 -51.93 -0.42 0.05 16 40 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 41 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.37 8.69 6.73 -40.82 -0.27 8.41 16 44 H 0.26 7.03 6.77 -40.82 -0.28 6.75 16 45 H 0.08 1.51 6.26 -51.93 -0.33 1.19 16 46 H 0.02 0.30 6.89 -51.93 -0.36 -0.05 16 47 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.04 0.37 7.47 -51.93 -0.39 -0.02 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -34.74 401.46 -9.37 -44.11 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.18 Total: 10.19 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.45 Total: 3.25 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.55 Total: -55.33 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.16 Total: -27.47 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.09 Total: 19.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.74 -9.37 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150091430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.253 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds