Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 115.54979 * 2 1 4 4 C 1.53010 * 117.49741 * 214.29651 * 2 1 3 5 5 C 1.52999 * 117.50034 * 145.67533 * 2 1 3 6 6 H 1.08998 * 117.49704 * 359.97386 * 5 2 1 7 7 C 1.50696 * 117.49907 * 214.97996 * 5 2 1 8 8 O 1.21283 * 120.00252 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00154 * 180.02562 * 7 5 2 10 10 C 1.46497 * 119.99871 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.46974 * 179.97438 * 10 9 7 12 12 H 1.09001 * 108.70860 * 306.76112 * 11 10 9 13 13 C 1.54170 * 108.74631 * 188.62594 * 11 10 9 14 14 N 1.48525 * 111.93543 * 197.82483 * 13 11 10 15 15 C 1.46905 * 110.99792 * 192.46684 * 14 13 11 16 16 C 1.50696 * 109.46937 * 194.17961 * 15 14 13 17 17 O 1.21292 * 120.00259 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99761 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99976 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99677 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99614 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00221 * 23 21 19 27 27 C 1.44064 * 114.19116 * 318.85693 * 14 13 11 28 28 C 1.54012 * 108.26815 * 93.30879 * 27 14 13 29 29 C 1.46290 * 112.02510 * 280.50063 * 28 27 14 30 30 O 1.39994 * 108.74384 * 65.00181 * 11 10 9 31 31 H 1.08999 * 109.47452 * 274.32810 * 1 2 3 32 32 H 1.09003 * 109.47613 * 34.32666 * 1 2 3 33 33 H 1.09006 * 109.47552 * 154.32427 * 1 2 3 34 34 H 1.09000 * 117.49692 * 145.02098 * 4 2 1 35 35 H 1.08995 * 117.49821 * 359.97438 * 4 2 1 36 36 H 0.97005 * 119.99645 * 359.97438 * 9 7 5 37 37 H 1.09000 * 109.47186 * 60.00067 * 10 9 7 38 38 H 1.08994 * 109.47319 * 299.99349 * 10 9 7 39 39 H 1.09000 * 108.98452 * 77.19749 * 13 11 10 40 40 H 1.09000 * 108.98725 * 318.45764 * 13 11 10 41 41 H 1.09000 * 109.47082 * 74.18046 * 15 14 13 42 42 H 1.09004 * 109.47143 * 314.18001 * 15 14 13 43 43 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 44 44 H 0.97000 * 119.99719 * 359.97438 * 22 21 19 45 45 H 1.09000 * 109.69954 * 213.00148 * 27 14 13 46 46 H 1.09002 * 109.70282 * 333.61313 * 27 14 13 47 47 H 1.08995 * 108.96973 * 41.15531 * 28 27 14 48 48 H 1.09002 * 108.96805 * 159.84820 * 28 27 14 49 49 H 1.09000 * 109.10231 * 180.14311 * 29 28 27 50 50 H 1.09001 * 109.10015 * 299.24034 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7648 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5292 -0.7807 1.4610 8 8 3.9720 0.3468 1.4007 9 7 4.1940 -1.7298 2.1493 10 6 5.4510 -1.3993 2.8252 11 6 5.9953 -2.6449 3.5275 12 1 5.2147 -3.0537 4.1691 13 6 7.1924 -2.2341 4.4078 14 7 8.0317 -3.4007 4.7825 15 6 8.9808 -3.0464 5.8464 16 6 10.0323 -4.1199 5.9594 17 8 9.9951 -5.0850 5.2257 18 7 11.0147 -4.0072 6.8752 19 6 11.9711 -4.9841 6.9785 20 1 11.9375 -5.8438 6.3257 21 6 12.9836 -4.8680 7.9230 22 7 13.0242 -3.8222 8.7177 23 14 14.2870 -6.1987 8.0632 24 1 15.2461 -5.8408 9.1390 25 1 13.6387 -7.4943 8.3896 26 1 15.0122 -6.3192 6.7729 27 6 7.2815 -4.5800 5.1316 28 6 7.1279 -5.4463 3.8675 29 6 6.0658 -4.9536 2.9905 30 8 6.3265 -3.5992 2.5583 31 1 -0.3634 0.0776 1.0247 32 1 -0.3634 0.8487 -0.5795 33 1 -0.3634 -0.9262 -0.4453 34 1 3.1715 -0.8756 -1.2681 35 1 1.6112 -1.8591 -1.2675 36 1 3.8400 -2.6317 2.1972 37 1 5.2724 -0.6161 3.5619 38 1 6.1770 -1.0492 2.0914 39 1 6.8188 -1.7599 5.3154 40 1 7.8051 -1.5173 3.8612 41 1 8.4486 -2.9580 6.7935 42 1 9.4567 -2.0954 5.6068 43 1 11.0447 -3.2352 7.4618 44 1 12.3475 -3.1310 8.6446 45 1 7.8148 -5.1410 5.8991 46 1 6.2974 -4.2931 5.5023 47 1 8.0700 -5.4433 3.3194 48 1 6.8960 -6.4690 4.1649 49 1 5.9969 -5.6003 2.1157 50 1 5.1182 -4.9794 3.5285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150091430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -108.774845 kcal Electronic energy + Delta-G solvation = -29628.336900 eV Core-core repulsion = 25462.543378 eV Total energy + Delta-G solvation = -4165.793522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37345 -40.83962 -39.97473 -37.88472 -37.27120 -36.12707 -36.01161 -33.92732 -33.12497 -31.42001 -29.72048 -28.58390 -27.61415 -26.48129 -25.23752 -23.74057 -22.59148 -21.94048 -21.72487 -21.19357 -20.82591 -19.93952 -18.55823 -18.42109 -17.73917 -17.46526 -17.09534 -16.65933 -16.45446 -16.07502 -16.01806 -15.58575 -15.49063 -15.26099 -15.00853 -14.81529 -14.60888 -14.29005 -14.14812 -13.97770 -13.74312 -13.66159 -13.43191 -13.33392 -13.16531 -12.91959 -12.76734 -12.34779 -12.30274 -11.99684 -11.92661 -11.87497 -11.79041 -11.53908 -11.45022 -11.34952 -11.09046 -10.89791 -10.60169 -10.31126 -10.16949 -10.08089 -9.12472 -8.91444 -6.05008 1.45183 1.52739 1.53864 1.81753 2.00803 2.03210 2.38709 2.61485 2.73067 2.86509 3.17561 3.24714 3.64664 3.78577 3.82775 3.86097 3.88724 3.92668 3.96702 3.99130 4.19465 4.21548 4.26822 4.36217 4.38116 4.42506 4.42749 4.50457 4.60213 4.66708 4.67993 4.77337 4.87487 4.88859 4.95211 4.98757 5.05749 5.13572 5.21860 5.34606 5.43398 5.44811 5.59915 5.92474 5.98745 6.28018 6.33548 6.49646 6.59701 6.77466 7.19633 7.46460 7.95974 8.56221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.001809 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.422201 B =15475.759104 C =15975.437837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.140 4.140 5 C -0.193 4.193 6 H 0.152 0.848 7 C 0.536 3.464 8 O -0.590 6.590 9 N -0.708 5.708 10 C 0.127 3.873 11 C 0.093 3.907 12 H 0.082 0.918 13 C 0.040 3.960 14 N -0.545 5.545 15 C 0.062 3.938 16 C 0.445 3.555 17 O -0.602 6.602 18 N -0.590 5.590 19 C -0.407 4.407 20 H 0.073 0.927 21 C -0.043 4.043 22 N -0.919 5.919 23 Si 1.133 2.867 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.275 1.275 27 C 0.077 3.923 28 C -0.140 4.140 29 C 0.069 3.931 30 O -0.374 6.374 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.415 0.585 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.383 0.617 44 H 0.258 0.742 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.285 3.871 -12.568 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 H 0.109 0.891 4 C -0.177 4.177 5 C -0.213 4.213 6 H 0.170 0.830 7 C 0.324 3.676 8 O -0.471 6.471 9 N -0.359 5.359 10 C 0.002 3.998 11 C 0.033 3.967 12 H 0.100 0.900 13 C -0.087 4.087 14 N -0.271 5.271 15 C -0.069 4.069 16 C 0.232 3.768 17 O -0.487 6.487 18 N -0.230 5.230 19 C -0.537 4.537 20 H 0.091 0.909 21 C -0.241 4.241 22 N -0.558 5.558 23 Si 0.953 3.047 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.051 4.051 28 C -0.179 4.179 29 C -0.007 4.007 30 O -0.293 6.293 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.217 0.783 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.121 0.879 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.300 3.472 -12.834 28.580 hybrid contribution -1.169 0.717 0.639 1.513 sum -26.469 4.189 -12.195 29.442 Atomic orbital electron populations 1.21397 0.90249 1.03306 1.02621 1.22406 0.96630 0.94059 1.01846 0.89109 1.23192 1.02832 1.01607 0.90083 1.22371 0.96386 1.06215 0.96359 0.83015 1.20261 0.85505 0.84032 0.77785 1.90686 1.70112 1.23167 1.63096 1.45694 1.23593 1.13982 1.52610 1.21375 0.85506 0.96060 0.96819 1.21948 0.94999 0.89696 0.90057 0.90011 1.23120 0.94634 0.91865 0.99093 1.59998 1.20235 1.05420 1.41439 1.21704 0.93356 0.97179 0.94666 1.20764 0.84450 0.89308 0.82252 1.90499 1.77214 1.35257 1.45702 1.42000 1.25224 1.22179 1.33627 1.20496 1.07856 1.03568 1.21737 0.90924 1.27783 1.01202 1.03200 0.91929 1.70972 1.36362 1.09928 1.38547 0.82634 0.73025 0.71916 0.77117 1.19787 1.19752 1.20026 1.21601 0.95659 0.90792 0.97092 1.21049 1.00536 0.99409 0.96886 1.21781 0.96907 0.82603 0.99385 1.87849 1.87024 1.15603 1.38810 0.91723 0.91322 0.90702 0.89754 0.85043 0.74799 0.89628 0.92351 0.91557 0.90547 0.91261 0.87760 0.78333 0.93071 0.93727 0.92596 0.93517 0.90374 0.87922 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.19 71.98 0.73 -0.20 16 2 C -0.13 -1.73 5.92 -10.79 -0.06 -1.79 16 3 H 0.09 1.69 7.67 -2.38 -0.02 1.67 16 4 C -0.14 -1.58 9.88 30.60 0.30 -1.27 16 5 C -0.19 -2.45 5.91 -11.54 -0.07 -2.52 16 6 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 7 C 0.54 10.77 7.61 87.66 0.67 11.44 16 8 O -0.59 -17.32 16.26 -3.04 -0.05 -17.37 16 9 N -0.71 -11.40 5.48 -463.07 -2.54 -13.94 16 10 C 0.13 2.40 5.18 86.38 0.45 2.85 16 11 C 0.09 1.75 2.00 30.99 0.06 1.81 16 12 H 0.08 1.18 6.56 -2.39 -0.02 1.16 16 13 C 0.04 0.92 5.18 86.38 0.45 1.37 16 14 N -0.55 -17.14 3.90 -899.20 -3.50 -20.64 16 15 C 0.06 2.12 5.34 85.55 0.46 2.57 16 16 C 0.44 21.09 7.14 87.66 0.63 21.71 16 17 O -0.60 -32.96 14.47 -3.07 -0.04 -33.01 16 18 N -0.59 -30.15 5.28 -306.98 -1.62 -31.78 16 19 C -0.41 -23.40 9.68 84.04 0.81 -22.59 16 20 H 0.07 4.48 7.16 -2.91 -0.02 4.45 16 21 C -0.04 -2.36 5.50 84.93 0.47 -1.90 16 22 N -0.92 -51.66 13.68 21.66 0.30 -51.36 16 23 Si 1.13 48.94 29.92 68.60 2.05 50.99 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.08 2.28 4.48 87.17 0.39 2.67 16 28 C -0.14 -3.88 5.62 28.87 0.16 -3.72 16 29 C 0.07 1.33 6.21 69.92 0.43 1.76 16 30 O -0.37 -8.61 10.00 -140.67 -1.41 -10.02 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.36 7.90 -2.38 -0.02 0.34 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.13 0.78 8.05 -2.39 -0.02 0.76 16 36 H 0.42 4.40 8.45 -92.70 -0.78 3.62 16 37 H 0.09 1.54 8.12 -2.39 -0.02 1.53 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 40 H 0.08 1.84 7.98 -2.39 -0.02 1.82 16 41 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 42 H 0.10 3.21 8.03 -2.38 -0.02 3.19 16 43 H 0.38 18.02 6.73 -92.71 -0.62 17.40 16 44 H 0.26 14.07 6.77 -92.71 -0.63 13.44 16 45 H 0.04 1.65 6.26 -2.39 -0.01 1.63 16 46 H 0.06 1.27 6.89 -2.39 -0.02 1.26 16 47 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 48 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.08 1.00 7.47 -2.39 -0.02 0.98 16 Total: -1.00 -79.16 401.46 -1.25 -80.41 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.31 Total: 34.51 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.88 Total: 12.21 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -7.37 Total: -117.72 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -1.50 Total: -60.39 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Total: -79.16 -1.25 -80.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150091430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.367 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds