Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.00051 * 2 1 4 4 C 1.54330 * 109.77842 * 121.16180 * 2 1 3 5 5 H 1.09008 * 110.51888 * 215.80822 * 4 2 1 6 6 N 1.46903 * 110.85340 * 339.03253 * 4 2 1 7 7 C 1.46896 * 111.00152 * 200.14533 * 6 4 2 8 8 C 1.50699 * 109.46991 * 179.97438 * 7 6 4 9 9 O 1.21291 * 120.00177 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00079 * 179.97438 * 8 7 6 11 11 C 1.37103 * 120.00254 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99573 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00388 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99526 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00256 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47265 * 89.99935 * 15 13 11 17 17 H 1.48499 * 109.47324 * 209.99812 * 15 13 11 18 18 H 1.48500 * 109.47166 * 330.00277 * 15 13 11 19 19 C 1.55159 * 103.02281 * 97.49917 * 4 2 1 20 20 C 1.54913 * 101.58137 * 35.30467 * 19 4 2 21 21 N 1.47026 * 109.88489 * 238.90463 * 2 1 3 22 22 C 1.34770 * 125.65059 * 59.55543 * 21 2 1 23 23 O 1.21285 * 119.99529 * 4.90350 * 22 21 2 24 24 C 1.50700 * 120.00285 * 184.89357 * 22 21 2 25 25 H 1.09002 * 109.57262 * 325.35096 * 24 22 21 26 26 C 1.53170 * 109.52646 * 205.18786 * 24 22 21 27 27 C 1.53175 * 109.03761 * 183.11453 * 26 24 22 28 28 C 1.53097 * 109.21321 * 56.95400 * 27 26 24 29 29 O 1.42907 * 109.40649 * 302.48839 * 28 27 26 30 30 C 1.42898 * 114.15459 * 61.06442 * 29 28 27 31 31 H 1.09000 * 109.46892 * 179.64163 * 1 2 3 32 32 H 1.08992 * 109.47402 * 299.64346 * 1 2 3 33 33 H 1.09003 * 109.46914 * 59.64633 * 1 2 3 34 34 H 1.00899 * 110.99648 * 76.18509 * 6 4 2 35 35 H 1.08998 * 109.47391 * 299.99975 * 7 6 4 36 36 H 1.09002 * 109.47149 * 59.99962 * 7 6 4 37 37 H 0.96999 * 120.00503 * 0.02562 * 10 8 7 38 38 H 0.97007 * 119.99612 * 180.02562 * 14 13 11 39 39 H 1.09008 * 111.00280 * 277.23813 * 19 4 2 40 40 H 1.08997 * 111.04334 * 153.39697 * 19 4 2 41 41 H 1.08996 * 110.37223 * 204.15314 * 20 19 4 42 42 H 1.09002 * 110.36380 * 81.82869 * 20 19 4 43 43 H 1.09009 * 109.54425 * 63.25210 * 26 24 22 44 44 H 1.09000 * 109.54857 * 302.98954 * 26 24 22 45 45 H 1.09007 * 109.51974 * 176.88663 * 27 26 24 46 46 H 1.08999 * 109.52233 * 297.01261 * 27 26 24 47 47 H 1.08998 * 109.47598 * 62.40781 * 28 27 26 48 48 H 1.09002 * 109.47562 * 182.43934 * 28 27 26 49 49 H 1.09000 * 109.47739 * 178.88815 * 30 29 28 50 50 H 1.08999 * 109.48650 * 58.84992 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2814 1.6197 6 7 1.0229 -0.8102 2.2892 7 6 1.6229 -1.0755 3.6035 8 6 0.5390 -1.1280 4.6491 9 8 -0.6195 -0.9612 4.3307 10 7 0.8566 -1.3611 5.9379 11 6 -0.1294 -1.4083 6.8893 12 1 -1.1608 -1.2590 6.6059 13 6 0.1981 -1.6482 8.2182 14 7 1.4532 -1.8294 8.5631 15 14 -1.1454 -1.7132 9.5143 16 1 -1.6414 -3.1070 9.6437 17 1 -0.5980 -1.2596 10.8180 18 1 -2.2652 -0.8249 9.1115 19 6 2.3562 -2.1697 0.6916 20 6 2.8613 -1.8466 -0.7368 21 7 2.0301 -0.7141 -1.1839 22 6 1.7754 -0.3846 -2.4657 23 8 1.1537 0.6253 -2.7201 24 6 2.2633 -1.2707 -3.5827 25 1 3.2230 -1.7088 -3.3087 26 6 2.4251 -0.4416 -4.8604 27 6 2.8459 -1.3667 -6.0064 28 6 1.8059 -2.4792 -6.1637 29 8 1.6812 -3.1904 -4.9304 30 6 1.2447 -2.3859 -3.8330 31 1 -0.3633 -1.0277 -0.0064 32 1 -0.3634 0.5082 0.8931 33 1 -0.3633 0.5193 -0.8868 34 1 0.3201 -1.4991 2.0667 35 1 2.1490 -2.0298 3.5768 36 1 2.3261 -0.2797 3.8492 37 1 1.7830 -1.4949 6.1927 38 1 1.6819 -1.9972 9.4908 39 1 1.4521 -2.7778 0.6579 40 1 3.1326 -2.6598 1.2790 41 1 2.7179 -2.7048 -1.3932 42 1 3.9124 -1.5588 -0.7114 43 1 3.1901 0.3196 -4.7068 44 1 1.4773 0.0368 -5.1072 45 1 2.9098 -0.7943 -6.9319 46 1 3.8180 -1.8058 -5.7819 47 1 0.8434 -2.0420 -6.4291 48 1 2.1231 -3.1648 -6.9494 49 1 1.1572 -3.0053 -2.9405 50 1 0.2750 -1.9466 -4.0674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178302058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -141.007929 kcal Electronic energy + Delta-G solvation = -30008.611202 eV Core-core repulsion = 25841.419948 eV Total energy + Delta-G solvation = -4167.191254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75470 -40.38100 -39.87848 -38.78723 -36.18766 -35.55606 -34.67855 -33.27231 -32.84978 -32.00011 -31.25520 -28.20784 -26.55106 -26.17879 -25.76332 -25.07505 -23.77564 -21.97031 -21.13853 -20.81924 -19.91908 -19.90787 -18.50328 -17.70827 -17.41740 -17.28690 -17.00147 -16.66362 -16.38429 -16.31675 -16.00248 -15.74162 -15.49550 -15.24910 -14.84633 -14.56974 -14.35368 -14.22099 -13.99322 -13.96026 -13.65299 -13.61288 -13.48444 -13.32985 -13.11459 -12.96125 -12.70679 -12.61896 -12.51105 -12.40337 -12.13639 -12.12331 -11.93357 -11.83999 -11.69007 -11.49217 -11.41942 -10.90580 -10.50690 -10.32262 -9.99534 -9.71826 -9.26679 -8.45722 -5.93816 1.38301 1.42441 1.48368 1.54671 1.83201 2.08099 2.30105 2.82568 2.92161 3.22049 3.35654 3.46021 3.57557 3.67595 3.73359 3.81884 3.94790 4.06135 4.11010 4.13826 4.20912 4.31207 4.35044 4.40858 4.45433 4.53221 4.56668 4.59175 4.63169 4.68307 4.71849 4.76085 4.81458 4.87906 4.98977 5.02145 5.06166 5.08265 5.10020 5.28649 5.36840 5.39347 5.42421 5.90661 6.10591 6.11898 6.37270 6.48361 6.62121 7.07970 7.14624 7.58911 8.14585 8.71480 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.001857 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.235046 B =15077.588362 C =15179.592853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.144 3.856 3 H 0.065 0.935 4 C 0.087 3.913 5 H 0.110 0.890 6 N -0.670 5.670 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.275 1.275 19 C -0.160 4.160 20 C 0.099 3.901 21 N -0.612 5.612 22 C 0.532 3.468 23 O -0.578 6.578 24 C -0.130 4.130 25 H 0.120 0.880 26 C -0.107 4.107 27 C -0.147 4.147 28 C 0.049 3.951 29 O -0.388 6.388 30 C 0.079 3.921 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.348 0.652 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.115 0.885 49 H 0.107 0.893 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -3.852 -26.490 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.024 4.024 5 H 0.128 0.872 6 N -0.302 5.302 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.511 6.511 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.814 3.186 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.200 1.200 19 C -0.199 4.199 20 C -0.023 4.023 21 N -0.346 5.346 22 C 0.321 3.679 23 O -0.457 6.457 24 C -0.151 4.151 25 H 0.138 0.862 26 C -0.145 4.145 27 C -0.184 4.184 28 C -0.027 4.027 29 O -0.306 6.306 30 C 0.001 3.999 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.133 0.867 49 H 0.125 0.875 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.580 -2.739 -26.596 28.401 hybrid contribution -0.302 -0.351 1.027 1.127 sum 9.277 -3.090 -25.568 27.374 Atomic orbital electron populations 1.21778 0.95241 1.01513 1.01406 1.21387 0.94540 0.95671 0.84419 0.91687 1.22616 0.94400 0.95632 0.89759 0.87197 1.59976 1.13783 1.56221 1.00180 1.21542 0.94367 1.02609 0.87905 1.20957 0.90637 0.81989 0.83969 1.90505 1.22888 1.56165 1.81585 1.41919 1.09963 1.63147 1.06028 1.19637 0.90443 1.47905 0.88254 0.90495 1.25992 0.99394 0.96351 0.99483 1.69667 1.17764 1.48709 1.19844 0.84962 0.77692 0.78692 0.77205 1.19614 1.19590 1.20026 1.23555 1.03201 0.97059 0.96124 1.22558 0.95406 0.88789 0.95525 1.48723 1.50278 1.31075 1.04504 1.20582 0.78914 0.85638 0.82754 1.90687 1.42875 1.28435 1.83740 1.21954 1.02609 0.96675 0.93886 0.86225 1.21461 1.02338 0.97638 0.93047 1.22177 1.00144 0.97089 0.99034 1.22863 0.98461 0.95262 0.86148 1.87951 1.88220 1.36099 1.18344 1.22373 0.94638 0.91918 0.90944 0.93035 0.91376 0.94088 0.83206 0.90664 0.87609 0.76879 0.91341 0.90792 0.87362 0.88426 0.88753 0.91205 0.92306 0.88841 0.89992 0.93092 0.86656 0.87510 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.20 71.98 0.59 -3.35 16 2 C 0.14 3.36 3.46 45.34 0.16 3.52 16 3 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 4 C 0.09 1.74 3.10 46.11 0.14 1.88 16 5 H 0.11 1.92 7.90 -2.38 -0.02 1.90 16 6 N -0.67 -19.01 4.51 -489.43 -2.21 -21.22 16 7 C 0.07 2.08 6.03 85.56 0.52 2.60 16 8 C 0.44 19.94 7.82 87.66 0.69 20.63 16 9 O -0.62 -33.93 15.78 -3.06 -0.05 -33.97 16 10 N -0.57 -28.55 5.29 -306.99 -1.62 -30.17 16 11 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 12 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 14 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 15 Si 0.99 42.68 29.55 68.60 2.03 44.70 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 C -0.16 -2.24 6.63 31.99 0.21 -2.03 16 20 C 0.10 1.16 6.37 86.86 0.55 1.72 16 21 N -0.61 -11.79 3.08 -788.02 -2.43 -14.22 16 22 C 0.53 11.80 6.70 87.66 0.59 12.39 16 23 O -0.58 -17.88 15.13 -3.04 -0.05 -17.93 16 24 C -0.13 -1.99 2.02 -11.45 -0.02 -2.01 16 25 H 0.12 1.34 7.23 -2.39 -0.02 1.32 16 26 C -0.11 -1.60 4.90 30.71 0.15 -1.45 16 27 C -0.15 -1.44 6.13 30.69 0.19 -1.25 16 28 C 0.05 0.54 6.85 72.01 0.49 1.04 16 29 O -0.39 -6.10 10.76 -148.98 -1.60 -7.70 16 30 C 0.08 1.22 6.08 72.01 0.44 1.66 16 31 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.07 2.17 7.45 -2.39 -0.02 2.15 16 33 H 0.04 1.26 6.91 -2.39 -0.02 1.25 16 34 H 0.35 10.64 7.24 -89.69 -0.65 10.00 16 35 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.11 2.90 8.09 -2.39 -0.02 2.88 16 37 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 38 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 39 H 0.07 1.18 7.81 -2.38 -0.02 1.16 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 0.82 6.73 -2.39 -0.02 0.80 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.06 1.11 7.77 -2.39 -0.02 1.10 16 45 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.11 1.44 7.47 -2.39 -0.02 1.42 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.08 395.16 -0.10 -73.18 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.43 Total: 38.53 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.97 Total: 17.28 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -5.97 Total: -114.09 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.70 Total: -59.60 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.08 -0.10 -73.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178302058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.830 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds