Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.99271 * 2 1 4 4 C 1.54325 * 109.87747 * 121.08780 * 2 1 3 5 5 H 1.08999 * 110.87153 * 215.65647 * 4 2 1 6 6 N 1.46895 * 110.72856 * 338.86901 * 4 2 1 7 7 C 1.46893 * 111.00318 * 199.97434 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55161 * 102.94024 * 97.23291 * 4 2 1 20 20 C 1.54906 * 101.58261 * 35.49543 * 19 4 2 21 21 N 1.47014 * 109.88563 * 238.89945 * 2 1 3 22 22 C 1.34778 * 125.64671 * 59.49289 * 21 2 1 23 23 O 1.21364 * 119.99953 * 0.02562 * 22 21 2 24 24 C 1.49090 * 119.99788 * 180.02562 * 22 21 2 25 25 O 1.20780 * 120.00142 * 359.97438 * 24 22 21 26 26 C 1.50700 * 119.99807 * 180.02562 * 24 22 21 27 27 C 1.53008 * 109.47067 * 179.97438 * 26 24 22 28 28 C 1.53008 * 109.46965 * 299.98993 * 26 24 22 29 29 C 1.52996 * 109.47801 * 59.99302 * 26 24 22 30 30 H 1.08999 * 109.47399 * 298.90543 * 1 2 3 31 31 H 1.09002 * 109.46733 * 58.91441 * 1 2 3 32 32 H 1.09003 * 109.46551 * 178.90347 * 1 2 3 33 33 H 1.00908 * 110.99391 * 323.92596 * 6 4 2 34 34 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 35 35 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 36 36 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 37 37 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.08991 * 111.00878 * 153.57302 * 19 4 2 39 39 H 1.09004 * 111.00104 * 277.42740 * 19 4 2 40 40 H 1.09000 * 110.36847 * 81.83007 * 20 19 4 41 41 H 1.09003 * 110.37098 * 204.15396 * 20 19 4 42 42 H 1.08995 * 109.47093 * 59.99574 * 27 26 24 43 43 H 1.08999 * 109.46589 * 179.97438 * 27 26 24 44 44 H 1.08998 * 109.46706 * 299.99294 * 27 26 24 45 45 H 1.09000 * 109.46746 * 60.00363 * 28 26 24 46 46 H 1.08999 * 109.47077 * 180.02562 * 28 26 24 47 47 H 1.08997 * 109.47210 * 300.01058 * 28 26 24 48 48 H 1.08998 * 109.47209 * 59.99949 * 29 26 24 49 49 H 1.08998 * 109.47256 * 180.02562 * 29 26 24 50 50 H 1.09000 * 109.47015 * 300.00313 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2429 5 1 2.9650 -0.2842 1.6212 6 7 1.0264 -0.8027 2.2905 7 6 1.6267 -1.0694 3.6044 8 6 0.5436 -1.1162 4.6513 9 8 -0.6143 -0.9438 4.3341 10 7 0.8619 -1.3486 5.9401 11 6 -0.1235 -1.3916 6.8924 12 1 -1.1546 -1.2389 6.6099 13 6 0.2045 -1.6318 8.2211 14 7 1.4592 -1.8181 8.5649 15 14 -1.1379 -1.6897 9.5188 16 1 -1.3476 -0.3290 10.0752 17 1 -2.4003 -2.1730 8.9039 18 1 -0.7331 -2.6134 10.6089 19 6 2.3520 -2.1694 0.6926 20 6 2.8569 -1.8498 -0.7365 21 7 2.0301 -0.7141 -1.1838 22 6 1.7744 -0.3853 -2.4656 23 8 1.0768 0.5751 -2.7181 24 6 2.3487 -1.2015 -3.5732 25 8 3.0434 -2.1571 -3.3219 26 6 2.0633 -0.8336 -5.0065 27 6 2.7665 -1.8239 -5.9370 28 6 0.5543 -0.8831 -5.2549 29 6 2.5795 0.5799 -5.2828 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5306 -0.8801 32 1 -0.3632 -1.0275 -0.0197 33 1 0.4829 0.0473 2.3071 34 1 2.3336 -0.2765 3.8486 35 1 2.1485 -2.0260 3.5780 36 1 1.7879 -1.4861 6.1939 37 1 1.6881 -1.9853 9.4925 38 1 3.1270 -2.6617 1.2799 39 1 1.4453 -2.7736 0.6606 40 1 3.9092 -1.5666 -0.7126 41 1 2.7090 -2.7081 -1.3920 42 1 2.3991 -2.8310 -5.7403 43 1 2.5597 -1.5580 -6.9736 44 1 3.8414 -1.7882 -5.7599 45 1 0.0537 -0.1774 -4.5921 46 1 0.3479 -0.6174 -6.2917 47 1 0.1865 -1.8901 -5.0580 48 1 3.6545 0.6152 -5.1058 49 1 2.3727 0.8461 -6.3193 50 1 2.0789 1.2856 -4.6199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178364299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -95.682924 kcal Electronic energy + Delta-G solvation = -30063.123072 eV Core-core repulsion = 25897.897258 eV Total energy + Delta-G solvation = -4165.225814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36587 -39.65053 -38.38431 -37.83672 -36.22140 -34.73263 -33.81206 -31.46294 -31.23650 -30.70923 -27.84315 -27.69050 -26.90559 -26.00815 -25.29496 -23.87941 -23.16142 -21.28550 -19.62906 -19.29652 -18.85684 -17.93285 -17.57559 -16.68533 -16.38705 -16.16282 -15.77105 -15.59550 -15.34558 -14.82341 -14.49745 -14.26407 -14.07822 -13.99382 -13.72557 -13.55028 -13.33802 -13.18324 -12.87950 -12.60358 -12.59685 -12.52818 -12.31677 -12.27375 -11.99401 -11.97051 -11.76936 -11.61648 -11.52076 -11.38330 -11.36935 -11.10242 -10.99913 -10.90359 -10.70001 -10.40679 -10.23552 -9.52899 -9.46867 -8.97259 -8.50414 -8.15636 -7.98365 -6.43644 -3.84476 0.68627 2.28485 2.71427 3.16649 3.25562 3.31528 3.58650 3.88112 4.01837 4.13567 4.26194 4.36241 4.43201 4.44943 4.48816 4.87069 4.93669 5.01751 5.09446 5.17569 5.18049 5.23895 5.24197 5.34557 5.38711 5.43198 5.48019 5.48645 5.51764 5.53411 5.55675 5.72084 5.74697 5.82873 5.88199 5.89998 5.93187 6.00697 6.04752 6.13729 6.24734 6.40797 6.61101 7.09634 7.14895 7.53553 7.55276 7.65696 8.04185 8.58882 9.15918 9.51998 10.03155 10.73996 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.001901 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.944307 B =14722.545309 C =15078.878662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.079 0.921 4 C 0.076 3.924 5 H 0.060 0.940 6 N -0.654 5.654 7 C 0.049 3.951 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.284 1.284 19 C -0.125 4.125 20 C 0.093 3.907 21 N -0.585 5.585 22 C 0.489 3.511 23 O -0.506 6.506 24 C 0.363 3.637 25 O -0.415 6.415 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.143 4.143 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.354 0.646 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 1.736 -26.035 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.097 0.903 4 C -0.035 4.035 5 H 0.078 0.922 6 N -0.290 5.290 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.163 4.163 20 C -0.029 4.029 21 N -0.320 5.320 22 C 0.274 3.726 23 O -0.383 6.383 24 C 0.232 3.768 25 O -0.284 6.284 26 C -0.095 4.095 27 C -0.193 4.193 28 C -0.201 4.201 29 C -0.201 4.201 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.177 0.823 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.089 0.911 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.272 1.173 -26.229 26.994 hybrid contribution 0.559 0.652 1.252 1.518 sum 6.830 1.825 -24.977 25.958 Atomic orbital electron populations 1.22001 0.93062 1.03550 1.02675 1.21760 0.96293 0.95446 0.83574 0.90342 1.22567 0.94093 0.95829 0.91022 0.92191 1.60365 1.22167 1.43776 1.02647 1.21735 0.96045 1.01521 0.89038 1.19767 0.89626 0.84649 0.83365 1.90528 1.20335 1.55046 1.80787 1.41858 1.10323 1.62338 1.05446 1.19703 0.90750 1.45764 0.86672 0.87901 1.25269 0.97207 0.97215 0.98271 1.69611 1.16725 1.48824 1.19118 0.85853 0.80569 0.78094 0.79750 1.20427 1.19394 1.20919 1.22941 1.02686 0.97053 0.93648 1.22710 0.94535 0.89271 0.96414 1.48616 1.48708 1.30042 1.04661 1.20567 0.82868 0.86256 0.82904 1.90708 1.37030 1.27669 1.82852 1.24939 0.77215 0.82567 0.92054 1.90378 1.27606 1.24156 1.86226 1.20956 0.98953 0.98585 0.91021 1.21787 1.00601 0.98401 0.98518 1.21916 0.91900 1.02944 1.03377 1.21907 1.01013 0.93821 1.03322 0.90655 0.91624 0.91433 0.82338 0.93730 0.89495 0.77461 0.91865 0.89708 0.89138 0.90943 0.88662 0.91928 0.91417 0.91981 0.90059 0.91140 0.92488 0.92589 0.91125 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.40 37.16 0.31 -1.66 16 2 C 0.13 1.54 3.41 -66.95 -0.23 1.32 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.08 0.89 3.11 -65.88 -0.21 0.69 16 5 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 6 N -0.65 -9.86 5.21 -106.05 -0.55 -10.42 16 7 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16 8 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 9 O -0.58 -15.49 15.78 5.55 0.09 -15.41 16 10 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 15 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.12 -1.33 6.71 -24.58 -0.16 -1.49 16 20 C 0.09 0.93 6.06 -2.53 -0.02 0.91 16 21 N -0.59 -6.62 3.08 -163.66 -0.50 -7.13 16 22 C 0.49 5.67 7.36 -11.75 -0.09 5.58 16 23 O -0.51 -6.57 12.29 5.48 0.07 -6.51 16 24 C 0.36 3.64 6.00 -29.80 -0.18 3.46 16 25 O -0.41 -4.54 13.39 5.98 0.08 -4.45 16 26 C -0.09 -0.74 0.76 -155.65 -0.12 -0.86 16 27 C -0.14 -0.91 7.76 37.16 0.29 -0.62 16 28 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 29 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 30 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 31 H 0.06 0.86 6.76 -51.93 -0.35 0.51 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.35 5.56 6.14 -39.29 -0.24 5.32 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 36 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.96 6.16 -51.93 -0.32 0.64 16 42 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 45 H 0.08 0.73 6.43 -51.93 -0.33 0.40 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.70 6.43 -51.93 -0.33 0.37 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -31.22 397.40 -7.38 -38.61 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.06 Total: 12.31 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.14 Total: 8.75 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.39 Total: -55.20 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.24 Total: -26.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.22 -7.38 -38.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178364299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.074 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds