Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.99271 * 2 1 4 4 C 1.54325 * 109.87747 * 121.08780 * 2 1 3 5 5 H 1.08999 * 110.87153 * 215.65647 * 4 2 1 6 6 N 1.46895 * 110.72856 * 338.86901 * 4 2 1 7 7 C 1.46893 * 111.00318 * 199.97434 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55161 * 102.94024 * 97.23291 * 4 2 1 20 20 C 1.54906 * 101.58261 * 35.49543 * 19 4 2 21 21 N 1.47014 * 109.88563 * 238.89945 * 2 1 3 22 22 C 1.34778 * 125.64671 * 59.49289 * 21 2 1 23 23 O 1.21364 * 119.99953 * 0.02562 * 22 21 2 24 24 C 1.49090 * 119.99788 * 180.02562 * 22 21 2 25 25 O 1.20780 * 120.00142 * 359.97438 * 24 22 21 26 26 C 1.50700 * 119.99807 * 180.02562 * 24 22 21 27 27 C 1.53008 * 109.47067 * 179.97438 * 26 24 22 28 28 C 1.53008 * 109.46965 * 299.98993 * 26 24 22 29 29 C 1.52996 * 109.47801 * 59.99302 * 26 24 22 30 30 H 1.08999 * 109.47399 * 298.90543 * 1 2 3 31 31 H 1.09002 * 109.46733 * 58.91441 * 1 2 3 32 32 H 1.09003 * 109.46551 * 178.90347 * 1 2 3 33 33 H 1.00908 * 110.99391 * 323.92596 * 6 4 2 34 34 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 35 35 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 36 36 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 37 37 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.08991 * 111.00878 * 153.57302 * 19 4 2 39 39 H 1.09004 * 111.00104 * 277.42740 * 19 4 2 40 40 H 1.09000 * 110.36847 * 81.83007 * 20 19 4 41 41 H 1.09003 * 110.37098 * 204.15396 * 20 19 4 42 42 H 1.08995 * 109.47093 * 59.99574 * 27 26 24 43 43 H 1.08999 * 109.46589 * 179.97438 * 27 26 24 44 44 H 1.08998 * 109.46706 * 299.99294 * 27 26 24 45 45 H 1.09000 * 109.46746 * 60.00363 * 28 26 24 46 46 H 1.08999 * 109.47077 * 180.02562 * 28 26 24 47 47 H 1.08997 * 109.47210 * 300.01058 * 28 26 24 48 48 H 1.08998 * 109.47209 * 59.99949 * 29 26 24 49 49 H 1.08998 * 109.47256 * 180.02562 * 29 26 24 50 50 H 1.09000 * 109.47015 * 300.00313 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2429 5 1 2.9650 -0.2842 1.6212 6 7 1.0264 -0.8027 2.2905 7 6 1.6267 -1.0694 3.6044 8 6 0.5436 -1.1162 4.6513 9 8 -0.6143 -0.9438 4.3341 10 7 0.8619 -1.3486 5.9401 11 6 -0.1235 -1.3916 6.8924 12 1 -1.1546 -1.2389 6.6099 13 6 0.2045 -1.6318 8.2211 14 7 1.4592 -1.8181 8.5649 15 14 -1.1379 -1.6897 9.5188 16 1 -1.3476 -0.3290 10.0752 17 1 -2.4003 -2.1730 8.9039 18 1 -0.7331 -2.6134 10.6089 19 6 2.3520 -2.1694 0.6926 20 6 2.8569 -1.8498 -0.7365 21 7 2.0301 -0.7141 -1.1838 22 6 1.7744 -0.3853 -2.4656 23 8 1.0768 0.5751 -2.7181 24 6 2.3487 -1.2015 -3.5732 25 8 3.0434 -2.1571 -3.3219 26 6 2.0633 -0.8336 -5.0065 27 6 2.7665 -1.8239 -5.9370 28 6 0.5543 -0.8831 -5.2549 29 6 2.5795 0.5799 -5.2828 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5306 -0.8801 32 1 -0.3632 -1.0275 -0.0197 33 1 0.4829 0.0473 2.3071 34 1 2.3336 -0.2765 3.8486 35 1 2.1485 -2.0260 3.5780 36 1 1.7879 -1.4861 6.1939 37 1 1.6881 -1.9853 9.4925 38 1 3.1270 -2.6617 1.2799 39 1 1.4453 -2.7736 0.6606 40 1 3.9092 -1.5666 -0.7126 41 1 2.7090 -2.7081 -1.3920 42 1 2.3991 -2.8310 -5.7403 43 1 2.5597 -1.5580 -6.9736 44 1 3.8414 -1.7882 -5.7599 45 1 0.0537 -0.1774 -4.5921 46 1 0.3479 -0.6174 -6.2917 47 1 0.1865 -1.8901 -5.0580 48 1 3.6545 0.6152 -5.1058 49 1 2.3727 0.8461 -6.3193 50 1 2.0789 1.2856 -4.6199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178364299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -116.821366 kcal Electronic energy + Delta-G solvation = -30064.039704 eV Core-core repulsion = 25897.897258 eV Total energy + Delta-G solvation = -4166.142446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20820 -40.61229 -39.97159 -38.93925 -36.94990 -36.13663 -35.51249 -33.27317 -32.38337 -31.79271 -28.54655 -28.26112 -28.18963 -26.89734 -26.59657 -25.40652 -24.00558 -22.13400 -21.08644 -20.56768 -19.91169 -19.64648 -18.45200 -17.83584 -17.51449 -17.16151 -16.95806 -16.56358 -16.52665 -16.30569 -15.79845 -15.60071 -15.34345 -14.96642 -14.70588 -14.55443 -14.44599 -14.14996 -14.04737 -13.61694 -13.52265 -13.43018 -13.33350 -13.24450 -13.06527 -13.04808 -12.89805 -12.68404 -12.57608 -12.55818 -12.41237 -12.31944 -12.12543 -11.95785 -11.91235 -11.74218 -11.62720 -11.49938 -10.35311 -10.28714 -10.00613 -9.87605 -9.37758 -8.46281 -5.94576 -0.13859 1.38064 1.41892 1.43806 1.54611 1.85259 2.06671 2.29234 2.76445 2.89272 3.21345 3.38829 3.46690 3.52720 3.59208 3.83830 3.86767 3.98426 4.19500 4.22748 4.26329 4.29709 4.38477 4.50373 4.55494 4.59212 4.64225 4.65965 4.71776 4.73171 4.83581 4.91641 4.92356 4.95871 4.97124 5.00044 5.09756 5.19730 5.20635 5.31289 5.32578 5.35813 5.41799 5.80864 5.87760 6.09026 6.23786 6.33895 6.60985 6.76645 7.13589 7.57591 8.12974 8.70957 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.001901 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.944307 B =14722.545309 C =15078.878662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.084 0.916 4 C 0.080 3.920 5 H 0.082 0.918 6 N -0.667 5.667 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.624 6.624 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.271 1.271 19 C -0.120 4.120 20 C 0.098 3.902 21 N -0.589 5.589 22 C 0.482 3.518 23 O -0.525 6.525 24 C 0.365 3.635 25 O -0.424 6.424 26 C -0.093 4.093 27 C -0.132 4.132 28 C -0.142 4.142 29 C -0.140 4.140 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.348 0.652 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.636 1.561 -26.972 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.102 0.898 4 C -0.030 4.030 5 H 0.099 0.901 6 N -0.303 5.303 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.510 6.510 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.196 1.196 19 C -0.159 4.159 20 C -0.024 4.024 21 N -0.324 5.324 22 C 0.268 3.732 23 O -0.402 6.402 24 C 0.236 3.764 25 O -0.294 6.294 26 C -0.094 4.094 27 C -0.189 4.189 28 C -0.199 4.199 29 C -0.197 4.197 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.806 0.986 -27.177 28.293 hybrid contribution 0.071 0.721 1.477 1.645 sum 7.877 1.707 -25.701 26.935 Atomic orbital electron populations 1.21871 0.94259 1.02233 1.01982 1.21705 0.95270 0.95940 0.84033 0.89783 1.22616 0.93774 0.96764 0.89867 0.90059 1.60346 1.23473 1.43834 1.02603 1.21589 0.93881 1.03588 0.87663 1.20886 0.90576 0.82231 0.83760 1.90500 1.22758 1.56239 1.81501 1.41921 1.10025 1.63128 1.05966 1.19646 0.90495 1.47936 0.88163 0.90403 1.26015 0.99422 0.96293 0.99546 1.69666 1.17851 1.48651 1.19850 0.84950 0.77722 0.78470 0.77330 1.19668 1.19910 1.19571 1.22922 1.02515 0.96176 0.94280 1.22758 0.95101 0.88771 0.95757 1.48730 1.48744 1.30311 1.04568 1.21003 0.82662 0.86261 0.83316 1.90700 1.37814 1.28505 1.83185 1.25136 0.76712 0.82029 0.92573 1.90371 1.28134 1.24467 1.86422 1.21043 0.99359 0.99428 0.89601 1.21779 1.00197 0.97650 0.99283 1.21901 0.91414 1.02354 1.04211 1.21888 1.00946 0.92751 1.04122 0.91215 0.92372 0.92965 0.82986 0.91145 0.87419 0.76907 0.91328 0.87793 0.90971 0.89219 0.88820 0.92474 0.89341 0.92181 0.91958 0.89039 0.92609 0.92227 0.89109 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.40 71.98 0.60 -3.18 16 2 C 0.13 3.02 3.41 45.35 0.15 3.17 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.08 1.73 3.11 46.11 0.14 1.87 16 5 H 0.08 1.49 7.89 -2.39 -0.02 1.47 16 6 N -0.67 -19.51 5.21 -489.45 -2.55 -22.06 16 7 C 0.06 2.06 6.02 85.56 0.52 2.58 16 8 C 0.44 20.21 7.82 87.66 0.69 20.90 16 9 O -0.62 -33.95 15.78 -3.05 -0.05 -34.00 16 10 N -0.57 -28.80 5.29 -306.98 -1.62 -30.42 16 11 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 12 H 0.08 4.69 7.16 -2.92 -0.02 4.67 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 14 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 15 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.12 -2.34 6.71 31.99 0.21 -2.12 16 20 C 0.10 1.78 6.06 86.85 0.53 2.31 16 21 N -0.59 -12.82 3.08 -790.07 -2.43 -15.25 16 22 C 0.48 10.98 7.36 87.16 0.64 11.63 16 23 O -0.52 -13.72 12.29 -3.29 -0.04 -13.76 16 24 C 0.37 7.02 6.00 28.60 0.17 7.20 16 25 O -0.42 -8.79 13.39 -1.51 -0.02 -8.81 16 26 C -0.09 -1.34 0.76 -52.92 -0.04 -1.38 16 27 C -0.13 -1.50 7.76 71.98 0.56 -0.94 16 28 C -0.14 -1.96 8.29 71.98 0.60 -1.36 16 29 C -0.14 -1.78 8.29 71.98 0.60 -1.19 16 30 H 0.07 1.87 6.23 -2.39 -0.01 1.86 16 31 H 0.06 1.58 6.76 -2.39 -0.02 1.56 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.35 10.90 6.14 -89.69 -0.55 10.35 16 34 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 35 H 0.11 3.02 8.13 -2.39 -0.02 3.00 16 36 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 37 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.77 6.16 -2.39 -0.01 1.76 16 42 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.71 8.10 -2.39 -0.02 0.70 16 45 H 0.06 1.12 6.43 -2.39 -0.02 1.10 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 1.05 6.43 -2.39 -0.02 1.04 16 Total: -1.00 -68.22 397.40 1.92 -66.29 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.32 Total: 40.64 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 6.65 Total: 21.34 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -6.33 Total: -116.50 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -0.11 Total: -56.57 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.22 1.92 -66.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178364299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.527 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds