Wall clock time and date at job start Sat Apr 11 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99479 * 2 1 4 4 C 1.54321 * 109.88485 * 121.09680 * 2 1 3 5 5 H 1.08994 * 110.72067 * 215.76501 * 4 2 1 6 6 N 1.46903 * 110.72051 * 338.86219 * 4 2 1 7 7 C 1.46893 * 110.99924 * 202.55558 * 6 4 2 8 8 C 1.50706 * 109.47176 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99584 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99737 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00254 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99943 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00135 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99954 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47152 * 89.99894 * 15 13 11 17 17 H 1.48501 * 109.47252 * 209.99373 * 15 13 11 18 18 H 1.48500 * 109.47362 * 329.99455 * 15 13 11 19 19 C 1.55159 * 103.09950 * 97.31163 * 4 2 1 20 20 C 1.55122 * 101.48419 * 35.28456 * 19 4 2 21 21 N 1.47028 * 109.88124 * 238.90771 * 2 1 3 22 22 C 1.34779 * 125.64564 * 59.48774 * 21 2 1 23 23 O 1.21279 * 120.00286 * 359.97438 * 22 21 2 24 24 C 1.50699 * 119.99579 * 180.02562 * 22 21 2 25 25 C 1.52998 * 109.47122 * 179.97438 * 24 22 21 26 26 H 1.09001 * 110.45761 * 52.39317 * 25 24 22 27 27 C 1.54511 * 110.51029 * 174.99632 * 25 24 22 28 28 C 1.54487 * 104.05863 * 118.64751 * 27 25 24 29 29 O 1.44420 * 104.80349 * 23.97867 * 28 27 25 30 30 C 1.44426 * 105.27391 * 319.48869 * 29 28 27 31 31 H 1.09002 * 109.47037 * 298.90011 * 1 2 3 32 32 H 1.09001 * 109.47209 * 58.90244 * 1 2 3 33 33 H 1.09003 * 109.46847 * 178.90250 * 1 2 3 34 34 H 1.00904 * 110.99923 * 78.60640 * 6 4 2 35 35 H 1.09001 * 109.46739 * 60.00281 * 7 6 4 36 36 H 1.09000 * 109.47767 * 300.00540 * 7 6 4 37 37 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 38 38 H 0.96994 * 120.00084 * 179.97438 * 14 13 11 39 39 H 1.09001 * 111.00027 * 153.48405 * 19 4 2 40 40 H 1.08995 * 111.00636 * 277.33463 * 19 4 2 41 41 H 1.09003 * 110.41672 * 204.29058 * 20 19 4 42 42 H 1.09004 * 110.30299 * 82.09092 * 20 19 4 43 43 H 1.09006 * 109.46997 * 299.99911 * 24 22 21 44 44 H 1.09006 * 109.47091 * 59.99350 * 24 22 21 45 45 H 1.09001 * 110.51179 * 237.29024 * 27 25 24 46 46 H 1.08994 * 110.51474 * 0.02562 * 27 25 24 47 47 H 1.08995 * 110.36816 * 142.81124 * 28 27 25 48 48 H 1.08998 * 110.37123 * 265.03118 * 28 27 25 49 49 H 1.09003 * 110.37286 * 281.67712 * 30 29 28 50 50 H 1.09004 * 110.36613 * 159.34983 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9640 -0.2813 1.6200 6 7 1.0266 -0.8028 2.2904 7 6 1.6324 -1.0087 3.6126 8 6 0.5493 -1.0573 4.6594 9 8 -0.6130 -0.9331 4.3356 10 7 0.8721 -1.2387 5.9552 11 6 -0.1132 -1.2834 6.9074 12 1 -1.1483 -1.1736 6.6190 13 6 0.2196 -1.4710 8.2433 14 7 -0.7249 -1.5133 9.1561 15 14 2.0096 -1.6616 8.7420 16 1 2.5843 -0.3259 9.0438 17 1 2.0983 -2.5226 9.9487 18 1 2.7693 -2.2877 7.6303 19 6 2.3554 -2.1701 0.6956 20 6 2.8568 -1.8497 -0.7369 21 7 2.0300 -0.7140 -1.1840 22 6 1.7742 -0.3851 -2.4658 23 8 1.0762 0.5741 -2.7180 24 6 2.3545 -1.2100 -3.5855 25 6 1.9136 -0.6272 -4.9297 26 1 2.1413 0.4377 -4.9763 27 6 2.5956 -1.3782 -6.0951 28 6 1.4186 -1.9876 -6.8888 29 8 0.2855 -1.1511 -6.5689 30 6 0.4054 -0.8718 -5.1570 31 1 -0.3633 0.4967 0.8997 32 1 -0.3634 0.5308 -0.8800 33 1 -0.3633 -1.0275 -0.0197 34 1 0.3433 -1.5179 2.0904 35 1 2.3130 -0.1862 3.8324 36 1 2.1848 -1.9484 3.6169 37 1 1.8016 -1.3377 6.2142 38 1 -0.4926 -1.6447 10.0886 39 1 3.1317 -2.6591 1.2841 40 1 1.4502 -2.7765 0.6650 41 1 2.7088 -2.7079 -1.3924 42 1 3.9094 -1.5672 -0.7149 43 1 3.4426 -1.1947 -3.5218 44 1 2.0001 -2.2374 -3.5014 45 1 3.1584 -0.6841 -6.7193 46 1 3.2465 -2.1648 -5.7138 47 1 1.6248 -1.9544 -7.9585 48 1 1.2369 -3.0139 -6.5699 49 1 0.0669 -1.7263 -4.5710 50 1 -0.1669 0.0186 -4.8966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178401708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:25 Heat of formation + Delta-G solvation = -106.583414 kcal Electronic energy + Delta-G solvation = -29660.194542 eV Core-core repulsion = 25494.496047 eV Total energy + Delta-G solvation = -4165.698495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78694 -39.69027 -38.60231 -37.84799 -34.88693 -33.97511 -33.84824 -31.72931 -31.39602 -30.90548 -29.99893 -27.45329 -26.66304 -25.26851 -23.78394 -23.39622 -23.03475 -21.20207 -20.22932 -19.46542 -19.11459 -18.47353 -17.60471 -16.73797 -16.46525 -16.24351 -15.88651 -15.84160 -15.42908 -15.28151 -14.84620 -14.76347 -14.25593 -14.02825 -13.82298 -13.43831 -13.29887 -13.08431 -12.98555 -12.87291 -12.68999 -12.58927 -12.42157 -12.26259 -12.07631 -11.97930 -11.70403 -11.64456 -11.51717 -11.26241 -11.19436 -11.04564 -10.95362 -10.86904 -10.63134 -10.12884 -10.00966 -9.91619 -9.60884 -8.88653 -8.64862 -8.24186 -8.19373 -6.34089 -3.85785 2.39502 2.64542 2.98373 3.03716 3.12105 3.63381 3.69241 3.91126 3.98537 4.06988 4.22939 4.25290 4.34765 4.43564 4.60311 4.64710 4.69977 4.84493 4.89057 4.90905 4.96854 5.01896 5.06068 5.17192 5.18470 5.21651 5.29715 5.37706 5.41284 5.46613 5.50701 5.54910 5.59755 5.65694 5.71039 5.72485 5.81319 5.84334 5.89182 6.08516 6.34337 6.45312 6.54521 6.98978 7.28417 7.44472 7.54611 7.94163 8.11124 8.56048 8.91750 9.38868 9.78569 10.78979 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.001819 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.009986 B =15388.438557 C =15770.462195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.078 0.922 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.168 4.168 20 C 0.102 3.898 21 N -0.617 5.617 22 C 0.527 3.473 23 O -0.533 6.533 24 C -0.129 4.129 25 C -0.106 4.106 26 H 0.094 0.906 27 C -0.153 4.153 28 C 0.043 3.957 29 O -0.377 6.377 30 C 0.054 3.946 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.356 0.644 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 -3.728 -26.916 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.096 0.904 4 C -0.030 4.030 5 H 0.112 0.888 6 N -0.285 5.285 7 C -0.085 4.085 8 C 0.234 3.766 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.207 4.207 20 C -0.022 4.022 21 N -0.352 5.352 22 C 0.316 3.684 23 O -0.409 6.409 24 C -0.169 4.169 25 C -0.125 4.125 26 H 0.112 0.888 27 C -0.190 4.190 28 C -0.034 4.034 29 O -0.296 6.296 30 C -0.022 4.022 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.177 0.823 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.216 -2.364 -27.169 30.305 hybrid contribution 2.039 -1.384 0.888 2.619 sum 15.255 -3.748 -26.282 30.618 Atomic orbital electron populations 1.21948 0.93522 1.02061 1.03543 1.21508 0.96019 0.95525 0.82838 0.90441 1.22627 0.95015 0.93892 0.91463 0.88835 1.60045 1.13759 1.55140 0.99585 1.21746 0.96549 1.00665 0.89533 1.19682 0.89811 0.84082 0.83001 1.90579 1.19950 1.53481 1.80545 1.42196 1.08431 1.65797 1.06486 1.19433 0.91055 1.47067 0.85888 0.86263 1.25046 0.97968 0.97637 0.95518 1.69621 1.32143 1.48646 1.01608 0.86664 0.84636 0.78942 0.79058 1.19591 1.20198 1.19579 1.23623 1.02697 0.98902 0.95514 1.22286 0.94941 0.89100 0.95842 1.48666 1.50722 1.30454 1.05352 1.20258 0.80805 0.85194 0.82190 1.90711 1.38290 1.28871 1.83070 1.21768 1.02363 1.00112 0.92651 1.22309 0.96015 1.01628 0.92583 0.88808 1.23038 0.98596 1.00356 0.97041 1.23403 0.85322 0.94299 1.00415 1.89152 1.46209 1.69494 1.24738 1.23509 0.95434 1.01462 0.81838 0.89367 0.92068 0.93326 0.82292 0.89359 0.93625 0.79713 0.91587 0.89613 0.90115 0.90674 0.91118 0.88597 0.88812 0.90347 0.90293 0.89192 0.92356 0.92586 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.22 37.16 0.31 -1.69 16 2 C 0.14 1.61 3.48 -66.95 -0.23 1.38 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.08 0.83 3.11 -65.88 -0.21 0.62 16 5 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 6 N -0.65 -9.00 4.44 -106.06 -0.47 -9.47 16 7 C 0.05 0.71 6.04 -4.98 -0.03 0.68 16 8 C 0.45 9.72 7.82 -10.98 -0.09 9.63 16 9 O -0.56 -14.67 15.78 5.54 0.09 -14.58 16 10 N -0.59 -13.58 5.09 -10.96 -0.06 -13.63 16 11 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 12 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.43 13.96 55.50 0.77 -24.66 16 15 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 19 C -0.17 -1.28 6.68 -24.47 -0.16 -1.44 16 20 C 0.10 0.65 6.69 -2.42 -0.02 0.63 16 21 N -0.62 -5.77 3.08 -162.88 -0.50 -6.27 16 22 C 0.53 5.36 7.45 -10.98 -0.08 5.28 16 23 O -0.53 -7.35 13.94 5.56 0.08 -7.27 16 24 C -0.13 -0.83 3.93 -27.88 -0.11 -0.94 16 25 C -0.11 -0.80 2.70 -89.06 -0.24 -1.04 16 26 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 27 C -0.15 -0.83 6.74 -25.16 -0.17 -1.00 16 28 C 0.04 0.28 7.63 37.94 0.29 0.57 16 29 O -0.38 -3.93 11.65 -35.23 -0.41 -4.34 16 30 C 0.05 0.51 6.38 37.93 0.24 0.75 16 31 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 32 H 0.06 0.87 6.76 -51.93 -0.35 0.52 16 33 H 0.05 0.62 7.93 -51.93 -0.41 0.21 16 34 H 0.36 5.21 7.36 -39.29 -0.29 4.93 16 35 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 41 H 0.07 0.35 7.48 -51.93 -0.39 -0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.48 7.67 -51.93 -0.40 0.08 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.29 7.73 -51.93 -0.40 -0.11 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.50 7.74 -51.93 -0.40 0.10 16 50 H 0.10 1.11 7.80 -51.93 -0.40 0.71 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -34.30 395.04 -8.25 -42.56 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -8.25 Total: 11.69 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.75 Total: 5.80 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.25 Total: -54.03 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.25 Total: -26.19 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.30 -8.25 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178401708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.027 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds