Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99479 * 2 1 4 4 C 1.54321 * 109.88485 * 121.09680 * 2 1 3 5 5 H 1.08994 * 110.72067 * 215.76501 * 4 2 1 6 6 N 1.46903 * 110.72051 * 338.86219 * 4 2 1 7 7 C 1.46893 * 110.99924 * 202.55558 * 6 4 2 8 8 C 1.50706 * 109.47176 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99584 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99737 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00254 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99943 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00135 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99954 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47152 * 89.99894 * 15 13 11 17 17 H 1.48501 * 109.47252 * 209.99373 * 15 13 11 18 18 H 1.48500 * 109.47362 * 329.99455 * 15 13 11 19 19 C 1.55159 * 103.09950 * 97.31163 * 4 2 1 20 20 C 1.55122 * 101.48419 * 35.28456 * 19 4 2 21 21 N 1.47028 * 109.88124 * 238.90771 * 2 1 3 22 22 C 1.34779 * 125.64564 * 59.48774 * 21 2 1 23 23 O 1.21279 * 120.00286 * 359.97438 * 22 21 2 24 24 C 1.50699 * 119.99579 * 180.02562 * 22 21 2 25 25 C 1.52998 * 109.47122 * 179.97438 * 24 22 21 26 26 H 1.09001 * 110.45761 * 52.39317 * 25 24 22 27 27 C 1.54511 * 110.51029 * 174.99632 * 25 24 22 28 28 C 1.54487 * 104.05863 * 118.64751 * 27 25 24 29 29 O 1.44420 * 104.80349 * 23.97867 * 28 27 25 30 30 C 1.44426 * 105.27391 * 319.48869 * 29 28 27 31 31 H 1.09002 * 109.47037 * 298.90011 * 1 2 3 32 32 H 1.09001 * 109.47209 * 58.90244 * 1 2 3 33 33 H 1.09003 * 109.46847 * 178.90250 * 1 2 3 34 34 H 1.00904 * 110.99923 * 78.60640 * 6 4 2 35 35 H 1.09001 * 109.46739 * 60.00281 * 7 6 4 36 36 H 1.09000 * 109.47767 * 300.00540 * 7 6 4 37 37 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 38 38 H 0.96994 * 120.00084 * 179.97438 * 14 13 11 39 39 H 1.09001 * 111.00027 * 153.48405 * 19 4 2 40 40 H 1.08995 * 111.00636 * 277.33463 * 19 4 2 41 41 H 1.09003 * 110.41672 * 204.29058 * 20 19 4 42 42 H 1.09004 * 110.30299 * 82.09092 * 20 19 4 43 43 H 1.09006 * 109.46997 * 299.99911 * 24 22 21 44 44 H 1.09006 * 109.47091 * 59.99350 * 24 22 21 45 45 H 1.09001 * 110.51179 * 237.29024 * 27 25 24 46 46 H 1.08994 * 110.51474 * 0.02562 * 27 25 24 47 47 H 1.08995 * 110.36816 * 142.81124 * 28 27 25 48 48 H 1.08998 * 110.37123 * 265.03118 * 28 27 25 49 49 H 1.09003 * 110.37286 * 281.67712 * 30 29 28 50 50 H 1.09004 * 110.36613 * 159.34983 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9640 -0.2813 1.6200 6 7 1.0266 -0.8028 2.2904 7 6 1.6324 -1.0087 3.6126 8 6 0.5493 -1.0573 4.6594 9 8 -0.6130 -0.9331 4.3356 10 7 0.8721 -1.2387 5.9552 11 6 -0.1132 -1.2834 6.9074 12 1 -1.1483 -1.1736 6.6190 13 6 0.2196 -1.4710 8.2433 14 7 -0.7249 -1.5133 9.1561 15 14 2.0096 -1.6616 8.7420 16 1 2.5843 -0.3259 9.0438 17 1 2.0983 -2.5226 9.9487 18 1 2.7693 -2.2877 7.6303 19 6 2.3554 -2.1701 0.6956 20 6 2.8568 -1.8497 -0.7369 21 7 2.0300 -0.7140 -1.1840 22 6 1.7742 -0.3851 -2.4658 23 8 1.0762 0.5741 -2.7180 24 6 2.3545 -1.2100 -3.5855 25 6 1.9136 -0.6272 -4.9297 26 1 2.1413 0.4377 -4.9763 27 6 2.5956 -1.3782 -6.0951 28 6 1.4186 -1.9876 -6.8888 29 8 0.2855 -1.1511 -6.5689 30 6 0.4054 -0.8718 -5.1570 31 1 -0.3633 0.4967 0.8997 32 1 -0.3634 0.5308 -0.8800 33 1 -0.3633 -1.0275 -0.0197 34 1 0.3433 -1.5179 2.0904 35 1 2.3130 -0.1862 3.8324 36 1 2.1848 -1.9484 3.6169 37 1 1.8016 -1.3377 6.2142 38 1 -0.4926 -1.6447 10.0886 39 1 3.1317 -2.6591 1.2841 40 1 1.4502 -2.7765 0.6650 41 1 2.7088 -2.7079 -1.3924 42 1 3.9094 -1.5672 -0.7149 43 1 3.4426 -1.1947 -3.5218 44 1 2.0001 -2.2374 -3.5014 45 1 3.1584 -0.6841 -6.7193 46 1 3.2465 -2.1648 -5.7138 47 1 1.6248 -1.9544 -7.9585 48 1 1.2369 -3.0139 -6.5699 49 1 0.0669 -1.7263 -4.5710 50 1 -0.1669 0.0186 -4.8966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178401708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = -133.738716 kcal Electronic energy + Delta-G solvation = -29661.372084 eV Core-core repulsion = 25494.496047 eV Total energy + Delta-G solvation = -4166.876037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52532 -40.47656 -40.08793 -38.82634 -36.19911 -35.55944 -34.56952 -33.73391 -32.28237 -31.70822 -30.58266 -28.52692 -27.67314 -26.43551 -25.20677 -24.10660 -23.60485 -21.83482 -21.30017 -20.90845 -20.30611 -19.87798 -18.38649 -17.66776 -17.42060 -17.20987 -16.94321 -16.69283 -16.47190 -16.35991 -16.03011 -15.73054 -15.36683 -15.00902 -14.87156 -14.68264 -14.43333 -14.25488 -13.96960 -13.83823 -13.69360 -13.62785 -13.39141 -13.23028 -13.02439 -12.95657 -12.72534 -12.55043 -12.43907 -12.39283 -12.13174 -11.97061 -11.90707 -11.77972 -11.67024 -11.51370 -11.49391 -10.77936 -10.73878 -10.41261 -10.23258 -9.63875 -9.25596 -8.39841 -6.01051 1.31081 1.37902 1.46461 1.66866 1.93530 1.98816 2.24889 2.76221 3.05554 3.16786 3.31825 3.41672 3.62186 3.69412 3.77371 3.87308 4.00421 4.08512 4.15694 4.22066 4.23690 4.31712 4.36949 4.43757 4.46586 4.51496 4.55337 4.60876 4.69991 4.72390 4.77246 4.82466 4.86379 4.87112 4.92865 5.02461 5.11379 5.13798 5.14980 5.24950 5.39843 5.44268 5.54359 5.85895 5.92669 6.07844 6.35698 6.58975 6.61609 6.90201 7.21001 7.41985 7.99564 8.77945 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.001819 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.009986 B =15388.438557 C =15770.462195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.144 3.856 3 H 0.063 0.937 4 C 0.087 3.913 5 H 0.115 0.885 6 N -0.676 5.676 7 C 0.065 3.935 8 C 0.447 3.553 9 O -0.617 6.617 10 N -0.590 5.590 11 C -0.329 4.329 12 H 0.052 0.948 13 C -0.018 4.018 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.226 1.226 19 C -0.160 4.160 20 C 0.101 3.899 21 N -0.616 5.616 22 C 0.517 3.483 23 O -0.582 6.582 24 C -0.117 4.117 25 C -0.104 4.104 26 H 0.072 0.928 27 C -0.142 4.142 28 C 0.033 3.967 29 O -0.409 6.409 30 C 0.052 3.948 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.347 0.653 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.391 0.609 38 H 0.278 0.722 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.467 -5.959 -28.052 35.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.024 4.024 5 H 0.132 0.868 6 N -0.308 5.308 7 C -0.067 4.067 8 C 0.235 3.765 9 O -0.501 6.501 10 N -0.232 5.232 11 C -0.458 4.458 12 H 0.070 0.930 13 C -0.216 4.216 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.149 1.149 19 C -0.200 4.200 20 C -0.021 4.021 21 N -0.350 5.350 22 C 0.307 3.693 23 O -0.462 6.462 24 C -0.156 4.156 25 C -0.124 4.124 26 H 0.091 0.909 27 C -0.179 4.179 28 C -0.043 4.043 29 O -0.328 6.328 30 C -0.024 4.024 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.031 -4.619 -28.337 34.446 hybrid contribution 0.044 -0.634 1.145 1.310 sum 19.075 -5.253 -27.192 33.628 Atomic orbital electron populations 1.21772 0.95759 1.01156 1.01235 1.21364 0.94163 0.95697 0.84813 0.91871 1.22641 0.94281 0.95841 0.89657 0.86753 1.59962 1.15179 1.55406 1.00223 1.21657 0.93915 1.03786 0.87356 1.21101 0.90842 0.80940 0.83652 1.90562 1.23141 1.54900 1.81518 1.42008 1.08332 1.66630 1.06254 1.18997 0.89723 1.49209 0.87916 0.92951 1.26166 1.04693 0.96161 0.94580 1.69816 1.35775 1.49809 1.02317 0.85333 0.76658 0.79638 0.79658 1.18343 1.20231 1.14890 1.23593 1.03102 0.96778 0.96527 1.22567 0.95526 0.88684 0.95298 1.48730 1.50687 1.31035 1.04556 1.21059 0.80139 0.84956 0.83120 1.90703 1.40475 1.31196 1.83823 1.21793 1.03974 1.00037 0.89834 1.22240 0.94653 1.00987 0.94476 0.90927 1.23015 0.98207 1.00884 0.95818 1.23681 0.84655 0.94489 1.01505 1.89115 1.48169 1.70510 1.25039 1.23448 0.96887 1.00287 0.81798 0.91769 0.94151 0.93474 0.83286 0.86563 0.89636 0.77364 0.91213 0.87063 0.91245 0.88126 0.88478 0.85347 0.86504 0.89903 0.87281 0.88071 0.91017 0.92215 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.22 71.98 0.59 -3.30 16 2 C 0.14 3.09 3.48 45.34 0.16 3.25 16 3 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.09 1.48 3.11 46.10 0.14 1.63 16 5 H 0.11 1.55 7.86 -2.39 -0.02 1.53 16 6 N -0.68 -17.57 4.44 -489.45 -2.17 -19.74 16 7 C 0.06 1.72 6.04 85.56 0.52 2.23 16 8 C 0.45 19.20 7.82 87.66 0.69 19.88 16 9 O -0.62 -33.53 15.78 -3.08 -0.05 -33.58 16 10 N -0.59 -26.76 5.09 -306.98 -1.56 -28.33 16 11 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 12 H 0.05 3.65 7.39 -2.91 -0.02 3.62 16 13 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 14 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 15 Si 0.97 37.63 27.74 68.60 1.90 39.53 16 16 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.23 -7.12 6.52 99.48 0.65 -6.47 16 19 C -0.16 -1.73 6.68 32.06 0.21 -1.51 16 20 C 0.10 0.78 6.69 86.93 0.58 1.36 16 21 N -0.62 -10.10 3.08 -787.63 -2.43 -12.53 16 22 C 0.52 9.86 7.45 87.66 0.65 10.51 16 23 O -0.58 -16.74 13.94 -3.02 -0.04 -16.79 16 24 C -0.12 -1.13 3.93 29.85 0.12 -1.01 16 25 C -0.10 -1.44 2.70 -9.78 -0.03 -1.46 16 26 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16 27 C -0.14 -1.13 6.74 31.61 0.21 -0.91 16 28 C 0.03 0.37 7.63 72.49 0.55 0.93 16 29 O -0.41 -8.57 11.65 -148.98 -1.74 -10.30 16 30 C 0.05 1.02 6.38 72.48 0.46 1.48 16 31 H 0.06 2.05 7.40 -2.39 -0.02 2.03 16 32 H 0.04 1.25 6.76 -2.39 -0.02 1.24 16 33 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 34 H 0.35 10.04 7.36 -89.69 -0.66 9.38 16 35 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.39 14.31 5.76 -92.71 -0.53 13.77 16 38 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 41 H 0.10 0.34 7.48 -2.39 -0.02 0.32 16 42 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.12 0.65 7.67 -2.38 -0.02 0.63 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 0.24 7.73 -2.39 -0.02 0.22 16 47 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 49 H 0.06 1.07 7.74 -2.39 -0.02 1.05 16 50 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 Total: -1.00 -86.14 395.04 0.10 -86.04 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.30 Total: 37.23 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.18 Total: 14.39 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -5.86 Total: -116.52 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -1.83 Total: -60.67 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -86.14 0.10 -86.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178401708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.701 kcal (2) G-P(sol) polarization free energy of solvation -86.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds