Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99985 * 2 1 4 4 C 1.54336 * 109.77992 * 121.17354 * 2 1 3 5 5 H 1.08996 * 110.66608 * 215.87658 * 4 2 1 6 6 N 1.46893 * 110.84749 * 339.02648 * 4 2 1 7 7 C 1.46908 * 110.99710 * 200.15009 * 6 4 2 8 8 C 1.50704 * 109.46916 * 179.97438 * 7 6 4 9 9 O 1.21294 * 120.00165 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99578 * 179.97438 * 8 7 6 11 11 C 1.37100 * 119.99644 * 180.02562 * 10 8 7 12 12 H 1.07994 * 120.00172 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99819 * 180.02562 * 11 10 8 14 14 N 1.31413 * 119.99975 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47239 * 90.00040 * 15 13 11 17 17 H 1.48502 * 109.47385 * 210.00102 * 15 13 11 18 18 H 1.48506 * 109.47013 * 330.00100 * 15 13 11 19 19 C 1.55159 * 103.01935 * 97.49413 * 4 2 1 20 20 C 1.54913 * 101.58183 * 35.30567 * 19 4 2 21 21 N 1.47023 * 109.87791 * 238.91078 * 2 1 3 22 22 C 1.34777 * 125.64848 * 59.56249 * 21 2 1 23 23 O 1.21277 * 120.00385 * 5.05810 * 22 21 2 24 24 C 1.50706 * 119.99795 * 185.06474 * 22 21 2 25 25 H 1.08997 * 109.48889 * 312.06072 * 24 22 21 26 26 C 1.53088 * 109.48265 * 72.09358 * 24 22 21 27 27 C 1.53179 * 109.16380 * 177.59011 * 26 24 22 28 28 C 1.53184 * 109.03631 * 303.02164 * 27 26 24 29 29 C 1.53088 * 109.16382 * 56.97723 * 28 27 26 30 30 O 1.42899 * 109.41699 * 302.39523 * 29 28 27 31 31 H 1.08996 * 109.47100 * 179.63777 * 1 2 3 32 32 H 1.09006 * 109.46777 * 299.63858 * 1 2 3 33 33 H 1.08998 * 109.47115 * 59.63646 * 1 2 3 34 34 H 1.00895 * 111.00321 * 76.19397 * 6 4 2 35 35 H 1.09004 * 109.46891 * 299.99434 * 7 6 4 36 36 H 1.08992 * 109.47438 * 59.99898 * 7 6 4 37 37 H 0.96998 * 120.00117 * 0.02562 * 10 8 7 38 38 H 0.96999 * 119.99806 * 179.97438 * 14 13 11 39 39 H 1.09001 * 111.00429 * 277.23149 * 19 4 2 40 40 H 1.08996 * 111.03307 * 153.39412 * 19 4 2 41 41 H 1.09000 * 110.36196 * 204.15060 * 20 19 4 42 42 H 1.08999 * 110.45392 * 81.87901 * 20 19 4 43 43 H 1.09000 * 109.52149 * 57.68649 * 26 24 22 44 44 H 1.08992 * 109.57236 * 297.52593 * 26 24 22 45 45 H 1.08998 * 109.54430 * 183.14863 * 27 26 24 46 46 H 1.09005 * 109.61227 * 62.93003 * 27 26 24 47 47 H 1.08999 * 109.51605 * 297.07379 * 28 27 26 48 48 H 1.08997 * 109.51871 * 176.88434 * 28 27 26 49 49 H 1.09003 * 109.48023 * 62.37664 * 29 28 27 50 50 H 1.08999 * 109.47881 * 182.40731 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0523 -0.7518 1.2426 5 1 2.9601 -0.2830 1.6224 6 7 1.0231 -0.8105 2.2890 7 6 1.6232 -1.0760 3.6033 8 6 0.5392 -1.1285 4.6491 9 8 -0.6191 -0.9607 4.3308 10 7 0.8571 -1.3618 5.9379 11 6 -0.1290 -1.4100 6.8891 12 1 -1.1604 -1.2607 6.6058 13 6 0.1987 -1.6501 8.2179 14 7 1.4537 -1.8313 8.5627 15 14 -1.1448 -1.7151 9.5141 16 1 -1.6407 -3.1088 9.6435 17 1 -0.5972 -1.2616 10.8179 18 1 -2.2646 -0.8266 9.1115 19 6 2.3562 -2.1699 0.6911 20 6 2.8612 -1.8465 -0.7372 21 7 2.0300 -0.7140 -1.1840 22 6 1.7753 -0.3842 -2.4658 23 8 1.1562 0.6272 -2.7203 24 6 2.2596 -1.2723 -3.5828 25 1 3.3079 -1.5226 -3.4199 26 6 1.4266 -2.5563 -3.6120 27 6 1.8847 -3.4264 -4.7865 28 6 1.7580 -2.6216 -6.0838 29 6 2.5783 -1.3350 -5.9591 30 8 2.1215 -0.5880 -4.8298 31 1 -0.3633 -1.0276 -0.0065 32 1 -0.3633 0.5082 0.8933 33 1 -0.3633 0.5195 -0.8867 34 1 0.3202 -1.4994 2.0666 35 1 2.1491 -2.0304 3.5765 36 1 2.3264 -0.2803 3.8491 37 1 1.7835 -1.4956 6.1924 38 1 1.6825 -1.9985 9.4904 39 1 1.4522 -2.7779 0.6575 40 1 3.1326 -2.6599 1.2785 41 1 2.7177 -2.7047 -1.3937 42 1 3.9125 -1.5595 -0.7136 43 1 0.3732 -2.3044 -3.7345 44 1 1.5645 -3.1023 -2.6788 45 1 1.2586 -4.3165 -4.8470 46 1 2.9240 -3.7209 -4.6402 47 1 0.7113 -2.3710 -6.2561 48 1 2.1339 -3.2138 -6.9180 49 1 3.6307 -1.5862 -5.8272 50 1 2.4574 -0.7379 -6.8629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178468229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -136.323897 kcal Electronic energy + Delta-G solvation = -30073.033199 eV Core-core repulsion = 25906.045060 eV Total energy + Delta-G solvation = -4166.988139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73196 -40.37565 -39.86535 -38.65782 -36.20182 -35.59930 -34.64183 -33.29206 -33.00760 -31.98380 -31.23190 -28.25292 -26.77906 -26.50956 -25.26050 -24.93452 -23.78558 -21.68133 -21.17418 -21.09981 -20.05860 -19.91332 -18.57477 -17.78965 -17.55820 -17.01416 -16.79499 -16.74139 -16.33284 -16.17263 -16.05112 -15.70149 -15.39297 -15.21208 -15.07204 -14.68176 -14.32933 -14.14870 -13.98326 -13.81831 -13.73140 -13.57994 -13.47689 -13.31759 -13.10032 -12.95170 -12.70019 -12.54382 -12.51320 -12.39966 -12.18845 -12.12285 -11.96991 -11.84480 -11.65484 -11.48825 -11.38262 -10.73619 -10.49405 -10.31580 -9.98977 -9.73213 -9.25440 -8.45311 -5.93285 1.38518 1.42674 1.48116 1.54729 1.60435 2.08790 2.30242 2.86249 2.96307 3.22527 3.35395 3.45166 3.62165 3.72490 3.76892 3.83956 3.99515 4.01775 4.06609 4.14377 4.17015 4.30955 4.34488 4.41686 4.45958 4.54039 4.58679 4.63384 4.64653 4.69966 4.74429 4.81468 4.83071 4.98917 5.01904 5.06870 5.09786 5.10739 5.15241 5.33512 5.36118 5.36834 5.42888 5.91372 6.11262 6.12710 6.38553 6.46406 6.62788 7.08631 7.15209 7.59594 8.15405 8.71886 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.001879 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.156336 B =14894.649546 C =15052.478734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.145 3.855 3 H 0.064 0.936 4 C 0.088 3.912 5 H 0.112 0.888 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.276 1.276 19 C -0.159 4.159 20 C 0.094 3.906 21 N -0.610 5.610 22 C 0.527 3.473 23 O -0.573 6.573 24 C 0.084 3.916 25 H 0.109 0.891 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.158 4.158 29 C 0.052 3.948 30 O -0.394 6.394 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.348 0.652 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.628 -7.627 -25.790 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.023 4.023 5 H 0.130 0.870 6 N -0.303 5.303 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.814 3.186 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.201 1.201 19 C -0.198 4.198 20 C -0.028 4.028 21 N -0.345 5.345 22 C 0.316 3.684 23 O -0.452 6.452 24 C 0.024 3.976 25 H 0.127 0.873 26 C -0.181 4.181 27 C -0.154 4.154 28 C -0.196 4.196 29 C -0.024 4.024 30 O -0.313 6.313 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.117 0.883 49 H 0.090 0.910 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.507 -6.125 -25.941 28.651 hybrid contribution -0.320 -0.770 0.899 1.226 sum 10.187 -6.895 -25.042 27.900 Atomic orbital electron populations 1.21782 0.95358 1.01545 1.01286 1.21400 0.94481 0.95711 0.84273 0.91762 1.22606 0.94406 0.95732 0.89553 0.87015 1.59958 1.13813 1.56297 1.00210 1.21546 0.94340 1.02681 0.87817 1.20976 0.90647 0.81965 0.83980 1.90508 1.22931 1.56140 1.81597 1.41916 1.09951 1.63169 1.06024 1.19632 0.90438 1.47878 0.88273 0.90527 1.25984 0.99378 0.96371 0.99469 1.69660 1.17742 1.48729 1.19835 0.84970 0.77709 0.78692 0.77226 1.19592 1.19601 1.20073 1.23556 1.03314 0.96954 0.95995 1.22705 0.95503 0.88771 0.95776 1.48543 1.50575 1.31437 1.03900 1.20496 0.79363 0.85582 0.82976 1.90694 1.42487 1.28274 1.83701 1.21903 1.01179 0.91085 0.83478 0.87347 1.22168 0.99474 0.94604 1.01882 1.21616 1.03307 0.97872 0.92588 1.22226 1.00973 0.96960 0.99403 1.22910 0.98091 0.93376 0.87984 1.88020 1.85701 1.42951 1.14668 0.92904 0.91220 0.94502 0.83188 0.90506 0.87594 0.76860 0.91342 0.90695 0.87045 0.87970 0.88450 0.92875 0.88406 0.89893 0.89305 0.92490 0.88300 0.90972 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.20 71.98 0.59 -3.54 16 2 C 0.15 3.53 3.46 45.35 0.16 3.68 16 3 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.09 1.75 3.10 46.11 0.14 1.90 16 5 H 0.11 1.92 7.89 -2.39 -0.02 1.90 16 6 N -0.67 -18.99 4.51 -489.42 -2.21 -21.20 16 7 C 0.07 2.07 6.02 85.56 0.52 2.59 16 8 C 0.44 19.87 7.82 87.66 0.69 20.55 16 9 O -0.63 -33.93 15.78 -3.07 -0.05 -33.98 16 10 N -0.57 -28.44 5.29 -306.98 -1.62 -30.07 16 11 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 14 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 15 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 C -0.16 -2.10 6.63 31.99 0.21 -1.88 16 20 C 0.09 1.04 6.49 86.86 0.56 1.60 16 21 N -0.61 -12.41 3.08 -788.02 -2.43 -14.84 16 22 C 0.53 13.46 6.89 87.66 0.60 14.07 16 23 O -0.57 -20.89 15.64 15.73 0.25 -20.65 16 24 C 0.08 1.49 2.34 29.88 0.07 1.56 16 25 H 0.11 1.23 7.88 -2.39 -0.02 1.21 16 26 C -0.14 -1.92 5.25 30.68 0.16 -1.76 16 27 C -0.12 -0.95 6.03 30.72 0.19 -0.76 16 28 C -0.16 -1.51 6.14 30.69 0.19 -1.33 16 29 C 0.05 0.65 6.84 72.01 0.49 1.14 16 30 O -0.39 -8.80 9.97 -130.23 -1.30 -10.10 16 31 H 0.05 1.46 7.84 -2.39 -0.02 1.44 16 32 H 0.07 2.28 7.45 -2.38 -0.02 2.26 16 33 H 0.04 1.21 6.91 -2.39 -0.02 1.20 16 34 H 0.35 10.60 7.24 -89.70 -0.65 9.95 16 35 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.11 2.88 8.08 -2.39 -0.02 2.86 16 37 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 38 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.07 1.13 7.81 -2.39 -0.02 1.11 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.67 5.50 -2.39 -0.01 0.66 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 0.95 5.97 -2.39 -0.01 0.93 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -78.40 394.08 0.38 -78.02 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.42 Total: 36.65 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 5.85 Total: 19.84 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -5.97 Total: -114.44 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -1.10 Total: -64.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -78.40 0.38 -78.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178468229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -78.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds