Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00005 * 2 1 4 4 C 1.53007 * 109.47200 * 239.99737 * 3 2 1 5 5 O 1.42902 * 109.46894 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47626 * 119.99904 * 3 2 1 7 7 C 1.50696 * 109.47626 * 180.02562 * 6 3 2 8 8 O 1.21289 * 119.99822 * 359.97438 * 7 6 3 9 9 N 1.34776 * 120.00366 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64687 * 359.97438 * 9 7 6 11 11 C 1.54906 * 104.83327 * 204.16152 * 10 9 7 12 12 C 1.55156 * 101.58293 * 322.99325 * 11 10 9 13 13 H 1.08996 * 110.71771 * 276.95718 * 12 11 10 14 14 N 1.46906 * 110.72105 * 153.86273 * 12 11 10 15 15 C 1.46901 * 110.99793 * 86.45499 * 14 12 11 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47027 * 125.65026 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.88064 * 298.32249 * 27 9 7 29 29 C 1.53001 * 109.88037 * 59.48627 * 27 9 7 30 30 H 1.07994 * 120.00419 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00268 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99923 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46815 * 300.00043 * 4 3 2 34 34 H 1.09003 * 109.46534 * 59.99367 * 4 3 2 35 35 H 1.08992 * 109.47376 * 179.97438 * 4 3 2 36 36 H 0.96695 * 113.99800 * 60.00622 * 5 3 2 37 37 H 1.09002 * 109.47625 * 59.99664 * 6 3 2 38 38 H 1.09007 * 109.46948 * 299.99582 * 6 3 2 39 39 H 1.09001 * 110.36733 * 85.32528 * 10 9 7 40 40 H 1.09000 * 110.46077 * 323.05226 * 10 9 7 41 41 H 1.09002 * 111.00768 * 204.91567 * 11 10 9 42 42 H 1.09010 * 111.00202 * 81.06521 * 11 10 9 43 43 H 1.00898 * 110.99995 * 210.40577 * 14 12 11 44 44 H 1.09002 * 109.47401 * 59.99808 * 15 14 12 45 45 H 1.09001 * 109.46874 * 299.99821 * 15 14 12 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46765 * 177.80901 * 29 27 9 49 49 H 1.09003 * 109.47419 * 297.80957 * 29 27 9 50 50 H 1.09003 * 109.46940 * 57.81309 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3861 -1.2493 5 8 1.1348 2.3912 -0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5445 3.4793 0.3398 9 7 4.5379 2.9837 2.2606 10 6 4.8151 2.1219 3.4241 11 6 5.2958 3.0928 4.5313 12 6 6.1198 4.1189 3.7095 13 1 7.1302 3.7498 3.5336 14 7 6.1552 5.4208 4.3892 15 6 7.2552 5.4775 5.3611 16 6 7.2600 6.8247 6.0364 17 8 6.4285 7.6557 5.7377 18 7 8.1876 7.1058 6.9729 19 6 8.1916 8.3313 7.5875 20 1 7.4517 9.0715 7.3209 21 6 9.1482 8.6213 8.5526 22 7 10.0488 7.7208 8.8766 23 14 9.1533 10.2908 9.3907 24 1 8.0442 11.1184 8.8520 25 1 8.9720 10.1110 10.8535 26 1 10.4481 10.9705 9.1322 27 6 5.3313 4.2152 2.3865 28 1 6.0228 4.2980 1.5480 29 6 4.4029 5.4309 2.4211 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.6515 0.5576 -1.2492 34 1 2.3164 1.3282 -2.1392 35 1 3.4878 2.3302 -1.2495 36 1 0.5433 2.4033 0.7642 37 1 3.6514 0.5578 1.2493 38 1 2.3163 1.3286 2.1392 39 1 5.5977 1.4018 3.1850 40 1 3.9088 1.6051 3.7399 41 1 5.9254 2.5773 5.2566 42 1 4.4503 3.5745 5.0226 43 1 6.2226 6.1751 3.7225 44 1 8.2037 5.3264 4.8456 45 1 7.1198 4.6962 6.1091 46 1 8.8523 6.4411 7.2120 47 1 10.7164 7.9232 9.5506 48 1 4.9950 6.3364 2.5535 49 1 3.8496 5.4924 1.4840 50 1 3.7029 5.3299 3.2505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178582352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -85.325288 kcal Electronic energy + Delta-G solvation = -29805.206896 eV Core-core repulsion = 25640.430223 eV Total energy + Delta-G solvation = -4164.776673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71408 -39.18941 -38.20251 -37.34426 -34.78613 -33.82187 -33.33569 -31.93930 -31.26000 -31.13810 -30.58968 -28.12431 -26.62865 -25.25924 -23.93945 -23.51339 -22.62217 -20.18514 -19.92399 -19.35106 -19.07922 -17.93263 -17.56399 -16.88894 -16.49484 -16.27347 -15.64703 -15.60181 -15.35853 -15.06514 -14.63060 -14.46108 -14.06776 -13.82156 -13.64812 -13.55077 -13.22451 -13.07535 -12.62670 -12.50042 -12.41447 -12.35054 -12.30738 -11.95899 -11.90147 -11.75280 -11.58851 -11.49337 -11.42584 -11.33177 -11.10973 -10.90842 -10.65996 -10.50027 -10.35380 -10.23952 -9.86691 -9.62198 -9.53644 -8.77443 -8.49004 -8.13749 -7.97915 -6.43540 -3.84296 1.77765 2.51775 2.74818 3.15333 3.26179 3.33545 3.88629 3.90426 4.04939 4.12744 4.27911 4.35738 4.43305 4.44765 4.61183 4.77071 4.83915 4.97924 4.98253 5.08507 5.10739 5.20991 5.25228 5.29141 5.33081 5.40172 5.48996 5.54965 5.58549 5.64418 5.75449 5.76727 5.83795 5.93918 6.05287 6.06619 6.12927 6.16538 6.25565 6.29842 6.32395 6.51223 7.16038 7.38463 7.40076 7.54013 7.58181 8.04815 8.09080 8.59273 9.16389 9.52397 10.03648 10.74210 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.001799 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.212437 B =15560.388112 C =15794.421187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.537 6.537 6 C -0.161 4.161 7 C 0.529 3.471 8 O -0.514 6.514 9 N -0.615 5.615 10 C 0.098 3.902 11 C -0.123 4.123 12 C 0.076 3.924 13 H 0.058 0.942 14 N -0.655 5.655 15 C 0.049 3.951 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.138 3.862 28 H 0.072 0.928 29 C -0.153 4.153 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.369 0.631 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.354 0.646 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -20.471 -13.963 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.201 4.201 7 C 0.318 3.682 8 O -0.389 6.389 9 N -0.350 5.350 10 C -0.025 4.025 11 C -0.162 4.162 12 C -0.035 4.035 13 H 0.076 0.924 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.034 3.966 28 H 0.090 0.910 29 C -0.211 4.211 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.216 0.784 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.177 0.823 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.416 -19.490 -14.697 27.386 hybrid contribution 1.118 -0.013 0.867 1.414 sum -11.298 -19.504 -13.830 26.444 Atomic orbital electron populations 1.23887 0.96049 1.02467 0.99255 1.23606 0.96761 0.98744 1.01514 1.19850 0.88020 0.84112 0.94468 1.21940 0.98861 1.04274 0.95337 1.86740 1.50005 1.48822 1.48633 1.22377 1.00318 0.96758 1.00636 1.20041 0.78835 0.88369 0.80973 1.90690 1.63524 1.49978 1.34756 1.48590 1.43929 1.19795 1.22732 1.22365 1.00676 0.93708 0.85785 1.22872 1.01053 0.95662 0.96564 1.22559 0.97227 0.91592 0.92127 0.92439 1.60366 1.46319 1.02741 1.19591 1.21731 0.92292 0.98215 0.96087 1.19786 0.84575 0.88900 0.84134 1.90534 1.40127 1.49469 1.66488 1.41866 1.27997 1.15697 1.34485 1.19758 1.14057 0.91767 1.17235 0.87845 1.25261 0.95663 0.99516 0.97525 1.69620 1.17278 1.34540 1.32888 0.85799 0.78239 0.81541 0.78770 1.19208 1.20746 1.20779 1.21578 0.92886 0.85392 0.96724 0.91002 1.21980 0.99978 0.96536 1.02653 0.87655 0.88203 0.86672 0.91962 0.92185 0.88729 0.78434 0.88194 0.88767 0.91376 0.90642 0.89992 0.89213 0.82303 0.93792 0.89570 0.77483 0.91935 0.91129 0.91631 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 13.93 29.02 0.40 -0.67 16 2 C -0.19 -1.20 8.77 -36.03 -0.32 -1.52 16 3 C 0.18 1.47 0.94 -91.77 -0.09 1.39 16 4 C -0.15 -1.38 8.50 37.16 0.32 -1.07 16 5 O -0.54 -5.45 10.84 -53.49 -0.58 -6.03 16 6 C -0.16 -1.18 3.94 -27.89 -0.11 -1.29 16 7 C 0.53 5.83 7.19 -10.99 -0.08 5.75 16 8 O -0.51 -7.50 11.86 -12.71 -0.15 -7.65 16 9 N -0.61 -6.33 3.08 -163.02 -0.50 -6.84 16 10 C 0.10 0.75 6.69 -2.53 -0.02 0.73 16 11 C -0.12 -1.18 6.71 -24.58 -0.16 -1.35 16 12 C 0.08 0.88 3.11 -65.88 -0.21 0.67 16 13 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 14 N -0.65 -9.93 5.21 -106.05 -0.55 -10.48 16 15 C 0.05 0.82 6.02 -4.97 -0.03 0.79 16 16 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 17 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 18 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 19 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 23 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.14 1.63 3.41 -66.95 -0.23 1.40 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 C -0.15 -2.07 8.40 37.16 0.31 -1.76 16 30 H 0.11 0.64 6.41 -52.49 -0.34 0.30 16 31 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.15 5.51 -51.93 -0.29 0.86 16 36 H 0.37 2.54 8.05 45.56 0.37 2.91 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.55 7.85 -51.93 -0.41 0.14 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.45 7.48 -51.93 -0.39 0.06 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.35 5.71 6.14 -39.29 -0.24 5.47 16 44 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 45 H 0.09 1.31 8.13 -51.93 -0.42 0.88 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 49 H 0.06 0.96 6.77 -51.93 -0.35 0.61 16 50 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -33.63 399.78 -7.84 -41.47 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -7.28 Total: 15.49 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.53 Total: 5.23 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.39 Total: -54.97 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.64 Total: -29.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.63 -7.84 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178582352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.856 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds