Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00005 * 2 1 4 4 C 1.53007 * 109.47200 * 239.99737 * 3 2 1 5 5 O 1.42902 * 109.46894 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47626 * 119.99904 * 3 2 1 7 7 C 1.50696 * 109.47626 * 180.02562 * 6 3 2 8 8 O 1.21289 * 119.99822 * 359.97438 * 7 6 3 9 9 N 1.34776 * 120.00366 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64687 * 359.97438 * 9 7 6 11 11 C 1.54906 * 104.83327 * 204.16152 * 10 9 7 12 12 C 1.55156 * 101.58293 * 322.99325 * 11 10 9 13 13 H 1.08996 * 110.71771 * 276.95718 * 12 11 10 14 14 N 1.46906 * 110.72105 * 153.86273 * 12 11 10 15 15 C 1.46901 * 110.99793 * 86.45499 * 14 12 11 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47027 * 125.65026 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.88064 * 298.32249 * 27 9 7 29 29 C 1.53001 * 109.88037 * 59.48627 * 27 9 7 30 30 H 1.07994 * 120.00419 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00268 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99923 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46815 * 300.00043 * 4 3 2 34 34 H 1.09003 * 109.46534 * 59.99367 * 4 3 2 35 35 H 1.08992 * 109.47376 * 179.97438 * 4 3 2 36 36 H 0.96695 * 113.99800 * 60.00622 * 5 3 2 37 37 H 1.09002 * 109.47625 * 59.99664 * 6 3 2 38 38 H 1.09007 * 109.46948 * 299.99582 * 6 3 2 39 39 H 1.09001 * 110.36733 * 85.32528 * 10 9 7 40 40 H 1.09000 * 110.46077 * 323.05226 * 10 9 7 41 41 H 1.09002 * 111.00768 * 204.91567 * 11 10 9 42 42 H 1.09010 * 111.00202 * 81.06521 * 11 10 9 43 43 H 1.00898 * 110.99995 * 210.40577 * 14 12 11 44 44 H 1.09002 * 109.47401 * 59.99808 * 15 14 12 45 45 H 1.09001 * 109.46874 * 299.99821 * 15 14 12 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46765 * 177.80901 * 29 27 9 49 49 H 1.09003 * 109.47419 * 297.80957 * 29 27 9 50 50 H 1.09003 * 109.46940 * 57.81309 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3861 -1.2493 5 8 1.1348 2.3912 -0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5445 3.4793 0.3398 9 7 4.5379 2.9837 2.2606 10 6 4.8151 2.1219 3.4241 11 6 5.2958 3.0928 4.5313 12 6 6.1198 4.1189 3.7095 13 1 7.1302 3.7498 3.5336 14 7 6.1552 5.4208 4.3892 15 6 7.2552 5.4775 5.3611 16 6 7.2600 6.8247 6.0364 17 8 6.4285 7.6557 5.7377 18 7 8.1876 7.1058 6.9729 19 6 8.1916 8.3313 7.5875 20 1 7.4517 9.0715 7.3209 21 6 9.1482 8.6213 8.5526 22 7 10.0488 7.7208 8.8766 23 14 9.1533 10.2908 9.3907 24 1 8.0442 11.1184 8.8520 25 1 8.9720 10.1110 10.8535 26 1 10.4481 10.9705 9.1322 27 6 5.3313 4.2152 2.3865 28 1 6.0228 4.2980 1.5480 29 6 4.4029 5.4309 2.4211 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.6515 0.5576 -1.2492 34 1 2.3164 1.3282 -2.1392 35 1 3.4878 2.3302 -1.2495 36 1 0.5433 2.4033 0.7642 37 1 3.6514 0.5578 1.2493 38 1 2.3163 1.3286 2.1392 39 1 5.5977 1.4018 3.1850 40 1 3.9088 1.6051 3.7399 41 1 5.9254 2.5773 5.2566 42 1 4.4503 3.5745 5.0226 43 1 6.2226 6.1751 3.7225 44 1 8.2037 5.3264 4.8456 45 1 7.1198 4.6962 6.1091 46 1 8.8523 6.4411 7.2120 47 1 10.7164 7.9232 9.5506 48 1 4.9950 6.3364 2.5535 49 1 3.8496 5.4924 1.4840 50 1 3.7029 5.3299 3.2505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178582352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -110.661046 kcal Electronic energy + Delta-G solvation = -29806.305537 eV Core-core repulsion = 25640.430223 eV Total energy + Delta-G solvation = -4165.875314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53110 -40.26700 -39.66010 -38.25588 -36.18177 -35.53903 -33.96665 -33.28028 -32.68623 -31.94476 -31.50457 -28.94344 -28.02377 -26.53299 -25.41274 -24.28945 -23.29707 -21.15724 -20.94924 -20.53790 -19.99123 -19.88124 -18.29695 -17.79140 -17.61124 -17.28211 -16.93428 -16.47205 -16.34210 -16.31213 -15.84328 -15.75491 -15.38542 -15.25410 -14.55165 -14.47392 -14.35491 -14.04307 -13.80530 -13.49736 -13.40692 -13.33655 -13.23438 -13.14985 -13.04695 -12.86923 -12.62278 -12.53459 -12.47884 -12.40265 -12.32585 -12.12068 -11.96528 -11.82900 -11.61168 -11.50799 -11.13828 -10.51179 -10.34150 -10.28732 -10.00449 -9.60513 -9.34597 -8.46557 -5.94813 1.32537 1.36550 1.42166 1.55921 1.72874 1.96898 2.06662 2.29795 2.93089 3.21072 3.27906 3.40809 3.52863 3.70224 3.71634 3.78758 4.03213 4.06864 4.17047 4.28213 4.31984 4.34064 4.42299 4.46324 4.53316 4.59396 4.61317 4.66123 4.70382 4.73514 4.79821 4.87980 4.95784 5.03752 5.07362 5.16230 5.27961 5.30210 5.38704 5.41954 5.47202 5.68201 5.83737 5.90277 6.11666 6.33096 6.60907 6.62306 6.86621 7.13741 7.29311 7.57562 8.13290 8.70922 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.001799 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.212437 B =15560.388112 C =15794.421187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.172 3.828 4 C -0.147 4.147 5 O -0.564 6.564 6 C -0.150 4.150 7 C 0.522 3.478 8 O -0.559 6.559 9 N -0.615 5.615 10 C 0.101 3.899 11 C -0.120 4.120 12 C 0.079 3.921 13 H 0.077 0.923 14 N -0.669 5.669 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.139 3.861 28 H 0.066 0.934 29 C -0.141 4.141 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.379 0.621 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.344 0.656 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -23.461 -13.136 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.131 3.869 4 C -0.204 4.204 5 O -0.371 6.371 6 C -0.190 4.190 7 C 0.312 3.688 8 O -0.437 6.437 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.032 4.032 13 H 0.094 0.906 14 N -0.304 5.304 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C 0.035 3.965 28 H 0.084 0.916 29 C -0.200 4.200 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.166 0.834 44 H 0.086 0.914 45 H 0.128 0.872 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.991 -22.539 -13.843 29.041 hybrid contribution 0.943 0.932 0.546 1.434 sum -11.047 -21.607 -13.297 27.672 Atomic orbital electron populations 1.24026 0.96148 1.02926 0.98628 1.23571 0.96775 0.98247 1.02017 1.19943 0.87989 0.84652 0.94324 1.21921 0.99164 1.03454 0.95901 1.86709 1.50749 1.50073 1.49613 1.22385 1.00501 0.95203 1.00928 1.20784 0.78530 0.89246 0.80263 1.90687 1.64882 1.51664 1.36511 1.48679 1.43415 1.19470 1.23472 1.22577 1.02721 0.93100 0.83744 1.22879 1.00310 0.95426 0.97283 1.22643 0.98458 0.90161 0.91902 0.90553 1.60382 1.45877 1.04286 1.19862 1.21583 0.94032 0.94322 0.96684 1.20929 0.82847 0.90770 0.82970 1.90505 1.41507 1.51623 1.67482 1.41920 1.28803 1.15140 1.35163 1.19682 1.14663 0.92841 1.19084 0.90504 1.25995 0.94892 1.02822 0.97460 1.69670 1.17404 1.35816 1.33095 0.84897 0.78197 0.77385 0.78015 1.20011 1.19560 1.19635 1.21436 0.92596 0.85549 0.96920 0.91584 1.21821 0.99749 0.97435 1.00987 0.88330 0.86683 0.84675 0.89716 0.93105 0.91870 0.77226 0.85339 0.86663 0.88736 0.88158 0.87970 0.91214 0.83380 0.91391 0.87211 0.76882 0.91316 0.92185 0.93399 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 13.93 67.78 0.94 -0.84 16 2 C -0.19 -1.92 8.77 25.65 0.22 -1.70 16 3 C 0.17 2.62 0.94 -11.54 -0.01 2.61 16 4 C -0.15 -2.70 8.50 71.98 0.61 -2.09 16 5 O -0.56 -11.45 10.84 -131.52 -1.43 -12.88 16 6 C -0.15 -1.80 3.94 29.84 0.12 -1.68 16 7 C 0.52 10.93 7.19 87.66 0.63 11.56 16 8 O -0.56 -16.81 11.86 14.41 0.17 -16.64 16 9 N -0.62 -11.59 3.08 -788.05 -2.43 -14.02 16 10 C 0.10 1.15 6.69 86.85 0.58 1.73 16 11 C -0.12 -1.96 6.71 31.98 0.21 -1.74 16 12 C 0.08 1.66 3.11 46.10 0.14 1.80 16 13 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 14 N -0.67 -19.87 5.21 -489.44 -2.55 -22.42 16 15 C 0.07 2.10 6.02 85.56 0.52 2.62 16 16 C 0.44 20.33 7.82 87.66 0.69 21.01 16 17 O -0.62 -34.45 15.78 -3.07 -0.05 -34.50 16 18 N -0.57 -28.86 5.29 -306.98 -1.62 -30.48 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -48.91 13.05 21.66 0.28 -48.62 16 23 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.14 3.22 3.41 45.34 0.15 3.37 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 C -0.14 -4.01 8.40 71.98 0.60 -3.41 16 30 H 0.10 1.09 6.41 -2.91 -0.02 1.07 16 31 H 0.12 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16 36 H 0.38 5.15 8.05 -74.06 -0.60 4.55 16 37 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.92 7.85 -2.38 -0.02 0.91 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.71 7.48 -2.39 -0.02 0.69 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.34 11.33 6.14 -89.70 -0.55 10.78 16 44 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 45 H 0.11 3.02 8.13 -2.39 -0.02 3.00 16 46 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 47 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.06 1.79 6.23 -2.39 -0.01 1.78 16 49 H 0.05 1.51 6.77 -2.39 -0.02 1.49 16 50 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.49 399.78 0.19 -76.29 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.91 Total: 43.35 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.70 Total: 15.06 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -6.32 Total: -115.54 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.30 Total: -64.02 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.49 0.19 -76.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178582352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.368 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds