Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.00304 * 2 1 4 4 C 1.54324 * 109.88243 * 121.10096 * 2 1 3 5 5 H 1.09001 * 110.71888 * 215.76476 * 4 2 1 6 6 N 1.46903 * 110.72174 * 338.85573 * 4 2 1 7 7 C 1.46896 * 111.00393 * 198.18258 * 6 4 2 8 8 C 1.50692 * 109.47353 * 179.97438 * 7 6 4 9 9 O 1.21291 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.08010 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00015 * 180.27547 * 11 10 8 14 14 N 1.31409 * 119.99927 * 359.72602 * 13 11 10 15 15 Si 1.86807 * 119.99832 * 179.72705 * 13 11 10 16 16 H 1.48497 * 109.47143 * 59.99821 * 15 13 11 17 17 H 1.48506 * 109.46708 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46924 * 299.99998 * 15 13 11 19 19 C 1.55153 * 102.94342 * 97.22049 * 4 2 1 20 20 C 1.54909 * 101.58212 * 35.50271 * 19 4 2 21 21 N 1.47024 * 109.88014 * 238.90343 * 2 1 3 22 22 C 1.34779 * 125.64532 * 59.56480 * 21 2 1 23 23 O 1.21286 * 119.99977 * 359.97438 * 22 21 2 24 24 C 1.50704 * 119.99902 * 179.97438 * 22 21 2 25 25 C 1.52998 * 109.46830 * 179.97438 * 24 22 21 26 26 O 1.42904 * 112.84952 * 53.80731 * 25 24 22 27 27 C 1.53772 * 113.61953 * 282.49749 * 25 24 22 28 28 C 1.53786 * 87.08304 * 220.02083 * 27 25 24 29 29 C 1.53776 * 87.07898 * 25.43165 * 28 27 25 30 30 H 1.09005 * 109.46927 * 305.17449 * 1 2 3 31 31 H 1.08997 * 109.47653 * 65.17327 * 1 2 3 32 32 H 1.08997 * 109.47312 * 185.17922 * 1 2 3 33 33 H 1.00899 * 110.99884 * 322.14231 * 6 4 2 34 34 H 1.09009 * 109.46621 * 59.99680 * 7 6 4 35 35 H 1.09000 * 109.47160 * 300.00843 * 7 6 4 36 36 H 0.97001 * 119.99702 * 0.02562 * 10 8 7 37 37 H 0.97005 * 119.99881 * 180.02562 * 14 13 11 38 38 H 1.09005 * 111.00281 * 153.57580 * 19 4 2 39 39 H 1.08999 * 111.00987 * 277.42632 * 19 4 2 40 40 H 1.09003 * 110.36736 * 204.15075 * 20 19 4 41 41 H 1.08997 * 110.45955 * 81.87433 * 20 19 4 42 42 H 1.08999 * 109.47093 * 299.99515 * 24 22 21 43 43 H 1.08995 * 109.46856 * 59.99875 * 24 22 21 44 44 H 0.96699 * 113.99708 * 309.66113 * 26 25 24 45 45 H 1.09007 * 113.61299 * 334.56960 * 27 25 24 46 46 H 1.08996 * 113.61629 * 105.47297 * 27 25 24 47 47 H 1.08993 * 113.61275 * 270.88246 * 28 27 25 48 48 H 1.08998 * 113.61109 * 139.98051 * 28 27 25 49 49 H 1.09003 * 113.61578 * 220.01779 * 29 28 27 50 50 H 1.09004 * 113.61442 * 89.11687 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 2.9639 -0.2814 1.6200 6 7 1.0265 -0.8029 2.2904 7 6 1.6218 -1.1119 3.5972 8 6 0.5391 -1.1573 4.6444 9 8 -0.6150 -0.9529 4.3326 10 7 0.8533 -1.4251 5.9274 11 6 -0.1318 -1.4670 6.8800 12 1 -1.1597 -1.2858 6.6022 13 6 0.1929 -1.7374 8.2037 14 7 1.4434 -1.9584 8.5416 15 14 -1.1485 -1.7870 9.5029 16 1 -2.1371 -2.8386 9.1539 17 1 -0.5456 -2.0927 10.8252 18 1 -1.8287 -0.4683 9.5625 19 6 2.3517 -2.1696 0.6922 20 6 2.8567 -1.8498 -0.7369 21 7 2.0299 -0.7141 -1.1839 22 6 1.7753 -0.3844 -2.4657 23 8 1.0784 0.5757 -2.7180 24 6 2.3564 -1.2088 -3.5855 25 6 1.9166 -0.6251 -4.9297 26 8 2.2213 0.7653 -5.0573 27 6 0.4692 -0.9778 -5.3106 28 6 0.9771 -1.1668 -6.7498 29 6 2.3568 -1.4657 -6.1399 30 1 -0.3633 0.5920 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 -0.3634 -1.0234 0.0928 33 1 0.5021 0.0584 2.3264 34 1 2.3467 -0.3405 3.8577 35 1 2.1222 -2.0791 3.5490 36 1 1.7764 -1.5883 6.1768 37 1 1.6700 -2.1476 9.4656 38 1 3.1269 -2.6620 1.2795 39 1 1.4451 -2.7737 0.6602 40 1 2.7086 -2.7080 -1.3924 41 1 3.9092 -1.5674 -0.7148 42 1 3.4443 -1.1937 -3.5210 43 1 2.0016 -2.2360 -3.5023 44 1 1.9261 1.3028 -4.3096 45 1 0.1084 -1.8978 -4.8505 46 1 -0.2267 -0.1464 -5.1989 47 1 0.9514 -0.2543 -7.3452 48 1 0.5318 -2.0200 -7.2614 49 1 3.1848 -1.0281 -6.6976 50 1 2.5121 -2.5190 -5.9065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178641524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -90.965495 kcal Electronic energy + Delta-G solvation = -29845.792309 eV Core-core repulsion = 25680.771058 eV Total energy + Delta-G solvation = -4165.021251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97095 -39.68982 -38.37395 -37.65714 -34.93886 -34.60957 -33.84734 -31.85651 -31.24602 -31.13568 -29.70095 -26.73595 -26.04219 -25.33689 -24.25616 -23.73578 -22.85032 -20.22942 -19.88965 -19.39751 -19.18874 -17.94947 -17.49641 -16.77669 -16.43760 -16.20854 -15.97025 -15.44220 -15.35715 -15.17388 -14.90608 -14.52658 -14.15143 -13.94522 -13.73098 -13.57749 -13.37313 -13.18611 -12.93194 -12.60931 -12.45213 -12.39122 -12.22590 -12.02540 -11.86015 -11.63323 -11.55984 -11.49596 -11.44396 -11.15424 -11.10354 -10.95568 -10.75143 -10.69601 -10.46591 -10.24337 -9.92739 -9.89189 -9.53215 -8.95039 -8.52076 -8.17235 -7.99733 -6.44852 -3.85786 2.29647 2.60706 3.18002 3.23960 3.28359 3.80179 3.86636 3.96222 4.02422 4.23794 4.24867 4.33002 4.35704 4.39869 4.52991 4.74117 4.88912 4.92118 4.95510 5.05412 5.08900 5.17664 5.20427 5.25543 5.30379 5.33584 5.41839 5.44048 5.48737 5.56252 5.60698 5.72094 5.78362 5.80048 5.90748 5.92684 5.99827 6.05085 6.06113 6.19952 6.22817 6.44519 7.10921 7.18934 7.52038 7.52597 7.54795 7.89671 8.02588 8.57546 9.14556 9.50480 10.01759 10.72677 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.001798 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.232429 B =15571.564532 C =15834.058222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.074 0.926 4 C 0.076 3.924 5 H 0.058 0.942 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.123 4.123 20 C 0.097 3.903 21 N -0.608 5.608 22 C 0.534 3.466 23 O -0.542 6.542 24 C -0.159 4.159 25 C 0.128 3.872 26 O -0.549 6.549 27 C -0.161 4.161 28 C -0.135 4.135 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.354 0.646 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.390 0.610 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 -1.258 -24.553 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.092 0.908 4 C -0.035 4.035 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.027 4.027 21 N -0.342 5.342 22 C 0.323 3.677 23 O -0.421 6.421 24 C -0.199 4.199 25 C 0.086 3.914 26 O -0.361 6.361 27 C -0.199 4.199 28 C -0.173 4.173 29 C -0.165 4.165 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.245 0.755 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.907 -1.452 -25.427 26.388 hybrid contribution 0.334 0.709 1.863 2.021 sum 7.241 -0.743 -23.563 24.662 Atomic orbital electron populations 1.21975 0.93326 1.03529 1.02406 1.21636 0.96093 0.95293 0.83733 0.90810 1.22560 0.94024 0.95663 0.91249 0.92421 1.60312 1.23338 1.42156 1.03120 1.21722 0.95996 1.01423 0.89144 1.19767 0.89622 0.84697 0.83385 1.90531 1.20607 1.54817 1.80741 1.41852 1.10575 1.61630 1.05864 1.19657 0.90976 1.45355 0.87009 0.87958 1.25261 0.97211 0.97155 0.98258 1.69601 1.16986 1.48137 1.19558 0.85915 0.80217 0.78999 0.79075 1.19870 1.20967 1.19916 1.22876 1.02617 0.97190 0.93481 1.22428 0.94831 0.88833 0.96560 1.48563 1.50192 1.30425 1.05012 1.20299 0.80118 0.85012 0.82224 1.90550 1.39173 1.29563 1.82844 1.22347 1.03103 1.00915 0.93534 1.21803 0.95068 0.83084 0.91422 1.86332 1.83008 1.16770 1.50023 1.23573 0.97357 1.02320 0.96669 1.22743 0.96099 1.01905 0.96519 1.23060 0.98546 0.99149 0.95779 0.91229 0.91651 0.91346 0.82373 0.93777 0.89545 0.77471 0.91806 0.89817 0.89112 0.90372 0.91051 0.88168 0.87783 0.75531 0.89822 0.90520 0.89829 0.91380 0.90497 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.31 37.16 0.31 -1.66 16 2 C 0.14 1.52 3.41 -66.95 -0.23 1.29 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.08 0.84 3.10 -65.88 -0.20 0.64 16 5 H 0.06 0.60 7.93 -51.93 -0.41 0.18 16 6 N -0.65 -9.64 5.14 -106.06 -0.55 -10.18 16 7 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 8 C 0.44 10.02 7.82 -10.99 -0.09 9.93 16 9 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 10 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 12 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 15 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 19 C -0.12 -1.13 6.62 -24.58 -0.16 -1.29 16 20 C 0.10 0.70 6.69 -2.53 -0.02 0.68 16 21 N -0.61 -5.92 3.08 -163.02 -0.50 -6.42 16 22 C 0.53 5.53 7.39 -10.98 -0.08 5.45 16 23 O -0.54 -7.10 12.42 -14.27 -0.18 -7.27 16 24 C -0.16 -1.19 4.35 -27.88 -0.12 -1.31 16 25 C 0.13 1.14 1.10 -89.81 -0.10 1.04 16 26 O -0.55 -6.25 13.39 -55.05 -0.74 -6.99 16 27 C -0.16 -1.42 7.17 -25.92 -0.19 -1.61 16 28 C -0.14 -1.02 8.02 -25.92 -0.21 -1.23 16 29 C -0.13 -0.90 7.47 -25.92 -0.19 -1.10 16 30 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 31 H 0.06 0.90 6.59 -51.93 -0.34 0.55 16 32 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.35 5.55 6.38 -39.29 -0.25 5.30 16 34 H 0.04 0.65 8.09 -51.92 -0.42 0.23 16 35 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.43 7.48 -51.93 -0.39 0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.59 7.75 -51.93 -0.40 0.18 16 44 H 0.39 4.52 6.19 45.56 0.28 4.80 16 45 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.47 8.10 -51.93 -0.42 0.04 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -32.03 397.64 -9.38 -41.41 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -7.59 Total: 16.61 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.55 Total: 3.73 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.38 Total: -53.95 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.83 Total: -29.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.03 -9.38 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178641524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.552 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds