Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.00304 * 2 1 4 4 C 1.54324 * 109.88243 * 121.10096 * 2 1 3 5 5 H 1.09001 * 110.71888 * 215.76476 * 4 2 1 6 6 N 1.46903 * 110.72174 * 338.85573 * 4 2 1 7 7 C 1.46896 * 111.00393 * 198.18258 * 6 4 2 8 8 C 1.50692 * 109.47353 * 179.97438 * 7 6 4 9 9 O 1.21291 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.08010 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00015 * 180.27547 * 11 10 8 14 14 N 1.31409 * 119.99927 * 359.72602 * 13 11 10 15 15 Si 1.86807 * 119.99832 * 179.72705 * 13 11 10 16 16 H 1.48497 * 109.47143 * 59.99821 * 15 13 11 17 17 H 1.48506 * 109.46708 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46924 * 299.99998 * 15 13 11 19 19 C 1.55153 * 102.94342 * 97.22049 * 4 2 1 20 20 C 1.54909 * 101.58212 * 35.50271 * 19 4 2 21 21 N 1.47024 * 109.88014 * 238.90343 * 2 1 3 22 22 C 1.34779 * 125.64532 * 59.56480 * 21 2 1 23 23 O 1.21286 * 119.99977 * 359.97438 * 22 21 2 24 24 C 1.50704 * 119.99902 * 179.97438 * 22 21 2 25 25 C 1.52998 * 109.46830 * 179.97438 * 24 22 21 26 26 O 1.42904 * 112.84952 * 53.80731 * 25 24 22 27 27 C 1.53772 * 113.61953 * 282.49749 * 25 24 22 28 28 C 1.53786 * 87.08304 * 220.02083 * 27 25 24 29 29 C 1.53776 * 87.07898 * 25.43165 * 28 27 25 30 30 H 1.09005 * 109.46927 * 305.17449 * 1 2 3 31 31 H 1.08997 * 109.47653 * 65.17327 * 1 2 3 32 32 H 1.08997 * 109.47312 * 185.17922 * 1 2 3 33 33 H 1.00899 * 110.99884 * 322.14231 * 6 4 2 34 34 H 1.09009 * 109.46621 * 59.99680 * 7 6 4 35 35 H 1.09000 * 109.47160 * 300.00843 * 7 6 4 36 36 H 0.97001 * 119.99702 * 0.02562 * 10 8 7 37 37 H 0.97005 * 119.99881 * 180.02562 * 14 13 11 38 38 H 1.09005 * 111.00281 * 153.57580 * 19 4 2 39 39 H 1.08999 * 111.00987 * 277.42632 * 19 4 2 40 40 H 1.09003 * 110.36736 * 204.15075 * 20 19 4 41 41 H 1.08997 * 110.45955 * 81.87433 * 20 19 4 42 42 H 1.08999 * 109.47093 * 299.99515 * 24 22 21 43 43 H 1.08995 * 109.46856 * 59.99875 * 24 22 21 44 44 H 0.96699 * 113.99708 * 309.66113 * 26 25 24 45 45 H 1.09007 * 113.61299 * 334.56960 * 27 25 24 46 46 H 1.08996 * 113.61629 * 105.47297 * 27 25 24 47 47 H 1.08993 * 113.61275 * 270.88246 * 28 27 25 48 48 H 1.08998 * 113.61109 * 139.98051 * 28 27 25 49 49 H 1.09003 * 113.61578 * 220.01779 * 29 28 27 50 50 H 1.09004 * 113.61442 * 89.11687 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 2.9639 -0.2814 1.6200 6 7 1.0265 -0.8029 2.2904 7 6 1.6218 -1.1119 3.5972 8 6 0.5391 -1.1573 4.6444 9 8 -0.6150 -0.9529 4.3326 10 7 0.8533 -1.4251 5.9274 11 6 -0.1318 -1.4670 6.8800 12 1 -1.1597 -1.2858 6.6022 13 6 0.1929 -1.7374 8.2037 14 7 1.4434 -1.9584 8.5416 15 14 -1.1485 -1.7870 9.5029 16 1 -2.1371 -2.8386 9.1539 17 1 -0.5456 -2.0927 10.8252 18 1 -1.8287 -0.4683 9.5625 19 6 2.3517 -2.1696 0.6922 20 6 2.8567 -1.8498 -0.7369 21 7 2.0299 -0.7141 -1.1839 22 6 1.7753 -0.3844 -2.4657 23 8 1.0784 0.5757 -2.7180 24 6 2.3564 -1.2088 -3.5855 25 6 1.9166 -0.6251 -4.9297 26 8 2.2213 0.7653 -5.0573 27 6 0.4692 -0.9778 -5.3106 28 6 0.9771 -1.1668 -6.7498 29 6 2.3568 -1.4657 -6.1399 30 1 -0.3633 0.5920 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 -0.3634 -1.0234 0.0928 33 1 0.5021 0.0584 2.3264 34 1 2.3467 -0.3405 3.8577 35 1 2.1222 -2.0791 3.5490 36 1 1.7764 -1.5883 6.1768 37 1 1.6700 -2.1476 9.4656 38 1 3.1269 -2.6620 1.2795 39 1 1.4451 -2.7737 0.6602 40 1 2.7086 -2.7080 -1.3924 41 1 3.9092 -1.5674 -0.7148 42 1 3.4443 -1.1937 -3.5210 43 1 2.0016 -2.2360 -3.5023 44 1 1.9261 1.3028 -4.3096 45 1 0.1084 -1.8978 -4.8505 46 1 -0.2267 -0.1464 -5.1989 47 1 0.9514 -0.2543 -7.3452 48 1 0.5318 -2.0200 -7.2614 49 1 3.1848 -1.0281 -6.6976 50 1 2.5121 -2.5190 -5.9065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178641524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -114.316140 kcal Electronic energy + Delta-G solvation = -29846.804869 eV Core-core repulsion = 25680.771058 eV Total energy + Delta-G solvation = -4166.033811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72908 -40.52105 -39.96562 -38.63983 -36.21497 -35.62820 -35.36924 -33.28915 -32.70172 -31.94849 -30.52808 -28.17446 -26.64596 -26.54513 -25.53205 -24.68927 -23.56165 -21.18705 -20.97102 -20.55463 -20.08099 -19.89420 -18.29339 -17.80865 -17.50558 -17.09513 -16.95984 -16.72225 -16.40765 -16.24072 -15.90463 -15.72020 -15.62778 -15.29571 -14.72027 -14.52842 -14.37820 -14.08450 -13.97063 -13.65499 -13.48281 -13.39661 -13.29712 -13.19227 -13.06187 -12.88907 -12.68994 -12.51392 -12.43069 -12.36746 -12.13281 -12.12105 -11.84881 -11.77112 -11.63068 -11.49680 -11.38206 -10.68237 -10.60975 -10.33045 -10.00720 -9.72437 -9.35530 -8.46191 -5.94564 1.39802 1.42022 1.52431 1.54631 1.85629 2.06842 2.29601 2.91911 3.15241 3.21300 3.25543 3.50516 3.59234 3.64094 3.68713 3.72583 3.92327 4.04073 4.12602 4.26068 4.31092 4.31373 4.40541 4.44888 4.50992 4.52710 4.60779 4.64741 4.69711 4.71400 4.78591 4.81274 4.85674 5.02090 5.05028 5.05779 5.13740 5.25091 5.30204 5.32229 5.39449 5.41489 5.45296 5.89402 6.10712 6.31998 6.46549 6.61172 6.73852 7.13040 7.13588 7.57596 8.13258 8.70744 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.001798 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.232429 B =15571.564532 C =15834.058222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.138 3.862 3 H 0.069 0.931 4 C 0.078 3.922 5 H 0.076 0.924 6 N -0.668 5.668 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.918 5.918 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.121 4.121 20 C 0.098 3.902 21 N -0.609 5.609 22 C 0.526 3.474 23 O -0.578 6.578 24 C -0.149 4.149 25 C 0.113 3.887 26 O -0.567 6.567 27 C -0.167 4.167 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.345 0.655 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.385 0.615 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.100 -3.065 -25.108 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.032 4.032 5 H 0.093 0.907 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.224 3.776 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.159 4.159 20 C -0.023 4.023 21 N -0.341 5.341 22 C 0.317 3.683 23 O -0.460 6.460 24 C -0.188 4.188 25 C 0.072 3.928 26 O -0.379 6.379 27 C -0.205 4.205 28 C -0.173 4.173 29 C -0.154 4.154 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.239 0.761 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.143 -3.290 -25.995 27.752 hybrid contribution -0.391 1.305 1.973 2.397 sum 8.752 -1.985 -24.022 25.644 Atomic orbital electron populations 1.21826 0.95064 1.02150 1.01133 1.21491 0.94611 0.95586 0.84924 0.91278 1.22646 0.93376 0.97371 0.89827 0.90658 1.60324 1.24806 1.41963 1.03161 1.21570 0.93741 1.03512 0.87761 1.20920 0.90587 0.82248 0.83799 1.90502 1.23095 1.56041 1.81484 1.41913 1.10275 1.62423 1.06371 1.19610 0.90763 1.47509 0.88538 0.90467 1.25993 0.99403 0.96238 0.99504 1.69656 1.18075 1.47944 1.20246 0.85024 0.77723 0.78796 0.77007 1.19799 1.19451 1.19883 1.22880 1.02504 0.95506 0.95011 1.22640 0.95383 0.88747 0.95559 1.48632 1.50224 1.30906 1.04386 1.20921 0.79649 0.84859 0.82883 1.90543 1.40812 1.31267 1.83373 1.22357 1.04139 1.01283 0.91024 1.22116 0.95251 0.82209 0.93256 1.86312 1.83136 1.18390 1.50089 1.23618 0.97042 1.01833 0.97967 1.22738 0.96865 1.01962 0.95755 1.23107 0.97705 1.00311 0.94263 0.92272 0.93057 0.92676 0.83425 0.91421 0.87211 0.76890 0.91306 0.87898 0.90993 0.87781 0.88661 0.86064 0.85137 0.76107 0.88551 0.93314 0.91330 0.89665 0.90829 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.31 71.98 0.60 -3.21 16 2 C 0.14 2.98 3.41 45.34 0.15 3.13 16 3 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.08 1.56 3.10 46.10 0.14 1.70 16 5 H 0.08 1.30 7.93 -2.39 -0.02 1.28 16 6 N -0.67 -19.15 5.14 -489.46 -2.52 -21.67 16 7 C 0.07 2.07 6.02 85.56 0.52 2.58 16 8 C 0.44 20.03 7.82 87.65 0.69 20.71 16 9 O -0.62 -33.98 15.78 -3.06 -0.05 -34.03 16 10 N -0.57 -28.56 5.29 -306.98 -1.62 -30.18 16 11 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 14 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 15 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.12 -1.83 6.62 31.98 0.21 -1.62 16 20 C 0.10 1.03 6.69 86.86 0.58 1.61 16 21 N -0.61 -10.61 3.08 -788.06 -2.43 -13.04 16 22 C 0.53 10.18 7.39 87.66 0.65 10.83 16 23 O -0.58 -15.45 12.42 15.90 0.20 -15.25 16 24 C -0.15 -1.78 4.35 29.85 0.13 -1.65 16 25 C 0.11 1.85 1.10 -10.27 -0.01 1.84 16 26 O -0.57 -12.99 13.39 -130.03 -1.74 -14.73 16 27 C -0.17 -2.84 7.17 31.12 0.22 -2.61 16 28 C -0.14 -1.89 8.02 31.12 0.25 -1.64 16 29 C -0.12 -1.35 7.47 31.12 0.23 -1.11 16 30 H 0.06 1.65 6.61 -2.38 -0.02 1.64 16 31 H 0.05 1.49 6.59 -2.39 -0.02 1.47 16 32 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.34 10.95 6.38 -89.69 -0.57 10.38 16 34 H 0.07 1.82 8.09 -2.38 -0.02 1.81 16 35 H 0.11 2.95 8.07 -2.39 -0.02 2.93 16 36 H 0.40 18.64 7.90 -92.71 -0.73 17.90 16 37 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 0.61 7.48 -2.39 -0.02 0.59 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 0.89 7.75 -2.39 -0.02 0.87 16 44 H 0.38 9.35 6.19 -74.06 -0.46 8.89 16 45 H 0.10 1.35 8.03 -2.38 -0.02 1.33 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.12 0.69 8.10 -2.38 -0.02 0.67 16 Total: -1.00 -72.62 397.64 -1.00 -73.63 By element: Atomic # 1 Polarization: 47.36 SS G_CDS: -0.79 Total: 46.57 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.64 Total: 12.50 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.29 Total: -113.23 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -1.59 Total: -64.01 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.62 -1.00 -73.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178641524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.690 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds