Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.87016 * 2 1 4 4 C 1.54326 * 109.88062 * 121.01013 * 2 1 3 5 5 H 1.08998 * 110.72036 * 215.76671 * 4 2 1 6 6 N 1.46499 * 110.72094 * 338.86853 * 4 2 1 7 7 C 1.36939 * 119.99547 * 202.55813 * 6 4 2 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55159 * 103.10119 * 97.31760 * 4 2 1 16 16 C 1.55131 * 101.48472 * 35.27999 * 15 4 2 17 17 N 1.47018 * 109.88682 * 238.82159 * 2 1 3 18 18 C 1.34775 * 125.64781 * 59.48865 * 17 2 1 19 19 O 1.21286 * 119.99858 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00007 * 180.02562 * 18 17 2 21 21 C 1.53007 * 109.47083 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47083 * 179.97438 * 21 20 18 23 23 O 1.21278 * 120.00054 * 0.02562 * 22 21 20 24 24 N 1.34775 * 120.00007 * 180.02562 * 22 21 20 25 25 C 1.47156 * 120.97922 * 359.71706 * 24 22 21 26 26 C 1.53713 * 108.16078 * 129.43461 * 25 24 22 27 27 O 1.42964 * 109.15085 * 52.53476 * 26 25 24 28 28 C 1.42959 * 114.16448 * 297.29313 * 27 26 25 29 29 C 1.47151 * 120.98233 * 179.97438 * 24 22 21 30 30 H 1.08994 * 109.47606 * 298.98236 * 1 2 3 31 31 H 1.09000 * 109.47269 * 58.99076 * 1 2 3 32 32 H 1.09003 * 109.46361 * 178.98363 * 1 2 3 33 33 H 0.96998 * 120.00185 * 22.55197 * 6 4 2 34 34 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 35 35 H 1.08993 * 111.00714 * 153.48760 * 15 4 2 36 36 H 1.08996 * 111.00382 * 277.34122 * 15 4 2 37 37 H 1.08996 * 110.41833 * 204.29265 * 16 15 4 38 38 H 1.09001 * 110.29354 * 82.08828 * 16 15 4 39 39 H 1.08998 * 109.46767 * 299.99569 * 20 18 17 40 40 H 1.08997 * 109.47472 * 60.00147 * 20 18 17 41 41 H 1.09005 * 109.47041 * 300.00198 * 21 20 18 42 42 H 1.08997 * 109.46746 * 59.99825 * 21 20 18 43 43 H 1.09004 * 109.67808 * 249.21116 * 25 24 22 44 44 H 1.08990 * 109.68484 * 9.76344 * 25 24 22 45 45 H 1.08999 * 109.65434 * 292.57030 * 26 25 24 46 46 H 1.09007 * 109.44263 * 172.37107 * 26 25 24 47 47 H 1.09003 * 109.51203 * 302.65289 * 28 27 26 48 48 H 1.09003 * 109.51220 * 182.50493 * 28 27 26 49 49 H 1.08991 * 109.68418 * 350.23571 * 29 24 22 50 50 H 1.09007 * 109.68029 * 110.75459 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2439 5 1 2.9639 -0.2789 1.6206 6 7 1.0292 -0.7994 2.2886 7 6 1.3924 -0.9838 3.5960 8 1 2.4348 -1.0915 3.8569 9 6 0.4206 -1.0322 4.5861 10 7 -0.8499 -0.9004 4.2683 11 14 0.9159 -1.2844 6.3694 12 1 0.9453 -2.7376 6.6743 13 1 -0.0676 -0.6124 7.2562 14 1 2.2639 -0.7039 6.5957 15 6 2.3554 -2.1690 0.6990 16 6 2.8569 -1.8508 -0.7341 17 7 2.0301 -0.7157 -1.1828 18 6 1.7744 -0.3888 -2.4651 19 8 1.0764 0.5701 -2.7188 20 6 2.3549 -1.2153 -3.5835 21 6 1.9140 -0.6345 -4.9287 22 6 2.4950 -1.4606 -6.0472 23 8 3.1925 -2.4197 -5.7935 24 7 2.2394 -1.1336 -7.3294 25 6 1.3909 0.0219 -7.6617 26 6 2.1414 0.8887 -8.6855 27 8 2.5541 0.0687 -9.7814 28 6 3.4731 -0.9665 -9.4242 29 6 2.7959 -1.9248 -8.4383 30 1 -0.3634 0.4979 0.8989 31 1 -0.3634 0.5294 -0.8808 32 1 -0.3632 -1.0276 -0.0182 33 1 0.0929 -0.7029 2.0544 34 1 -1.1071 -0.7697 3.3422 35 1 3.1316 -2.6572 1.2882 36 1 1.4503 -2.7755 0.6691 37 1 2.7090 -2.7100 -1.3883 38 1 3.9094 -1.5682 -0.7122 39 1 3.4429 -1.1998 -3.5198 40 1 2.0005 -2.2425 -3.4981 41 1 0.8259 -0.6503 -4.9921 42 1 2.2681 0.3928 -5.0144 43 1 0.4500 -0.3246 -8.0894 44 1 1.1933 0.6033 -6.7613 45 1 3.0172 1.3358 -8.2153 46 1 1.4803 1.6758 -9.0485 47 1 4.3538 -0.5261 -8.9567 48 1 3.7703 -1.5142 -10.3185 49 1 3.5291 -2.6328 -8.0523 50 1 1.9943 -2.4646 -8.9426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180075473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -114.177509 kcal Electronic energy + Delta-G solvation = -29920.994797 eV Core-core repulsion = 25754.966998 eV Total energy + Delta-G solvation = -4166.027799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64386 -41.16915 -39.46923 -38.93404 -36.25589 -35.86520 -34.27811 -33.34666 -32.36007 -32.11910 -30.50213 -29.08474 -26.84337 -26.63119 -25.38082 -24.91557 -23.81650 -22.85795 -21.18546 -20.14665 -19.96097 -19.54103 -18.81244 -17.87403 -17.47380 -17.38186 -17.02832 -16.84921 -16.69346 -16.22637 -16.16886 -16.03367 -15.72183 -15.47893 -14.89475 -14.86260 -14.53890 -14.43238 -13.94176 -13.88625 -13.76490 -13.58749 -13.31300 -13.23133 -13.07671 -12.85382 -12.69193 -12.60345 -12.42990 -12.38879 -12.25501 -11.96514 -11.84212 -11.78271 -11.68634 -11.27462 -11.26498 -10.92585 -10.92481 -10.86328 -9.73389 -9.67971 -9.12793 -8.37975 -5.32949 1.46226 1.55776 1.59937 1.65043 1.70505 1.84204 1.99590 2.72577 2.84202 3.22335 3.39110 3.57096 3.64193 3.68212 3.75279 3.79477 3.93689 3.99053 4.01077 4.07523 4.08914 4.19156 4.25035 4.27796 4.29021 4.43279 4.45041 4.54804 4.55643 4.63124 4.70842 4.73971 4.74304 4.78690 4.82422 4.86417 4.90720 4.96366 5.09348 5.16559 5.23207 5.31799 5.40507 5.62564 6.07736 6.18118 6.49224 6.51647 6.98015 7.06605 7.09534 7.98956 8.10327 9.13363 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.001867 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.975446 B =14993.204341 C =15449.887086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.067 0.933 4 C 0.169 3.831 5 H 0.065 0.935 6 N -0.744 5.744 7 C -0.327 4.327 8 H 0.072 0.928 9 C -0.107 4.107 10 N -0.977 5.977 11 Si 1.131 2.869 12 H -0.285 1.285 13 H -0.297 1.297 14 H -0.271 1.271 15 C -0.145 4.145 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.576 6.576 20 C -0.110 4.110 21 C -0.117 4.117 22 C 0.520 3.480 23 O -0.574 6.574 24 N -0.619 5.619 25 C 0.067 3.933 26 C 0.044 3.956 27 O -0.396 6.396 28 C 0.051 3.949 29 C 0.073 3.927 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.367 0.633 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.059 0.941 46 H 0.128 0.872 47 H 0.054 0.946 48 H 0.126 0.874 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 0.248 -28.776 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.085 0.915 4 C 0.059 3.941 5 H 0.083 0.917 6 N -0.388 5.388 7 C -0.458 4.458 8 H 0.090 0.910 9 C -0.298 4.298 10 N -0.625 5.625 11 Si 0.956 3.044 12 H -0.212 1.212 13 H -0.224 1.224 14 H -0.196 1.196 15 C -0.185 4.185 16 C -0.017 4.017 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.456 6.456 20 C -0.150 4.150 21 C -0.157 4.157 22 C 0.309 3.691 23 O -0.454 6.454 24 N -0.353 5.353 25 C -0.056 4.056 26 C -0.033 4.033 27 O -0.314 6.314 28 C -0.026 4.026 29 C -0.049 4.049 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.203 0.797 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.146 0.854 47 H 0.072 0.928 48 H 0.143 0.857 49 H 0.110 0.890 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.530 0.145 -27.430 29.038 hybrid contribution -0.041 0.104 -1.058 1.064 sum 9.489 0.250 -28.488 30.027 Atomic orbital electron populations 1.21840 0.95736 1.01289 1.01459 1.21563 0.94332 0.95771 0.85402 0.91536 1.21329 0.91785 0.94305 0.86666 0.91714 1.42835 1.04758 1.87870 1.03316 1.20423 0.94678 1.44961 0.85735 0.91025 1.27183 0.93274 1.00941 1.08368 1.70970 1.17221 1.55350 1.18976 0.82576 0.74844 0.76571 0.70440 1.21239 1.22366 1.19639 1.23376 1.01308 0.98573 0.95287 1.22530 0.95304 0.88723 0.95180 1.48626 1.50375 1.30714 1.04596 1.20770 0.80071 0.84810 0.82641 1.90659 1.40461 1.30795 1.83704 1.21298 1.03374 0.99928 0.90403 1.21354 1.03329 1.00479 0.90511 1.20880 0.79714 0.84467 0.84002 1.90689 1.40301 1.30453 1.83915 1.48261 1.50778 1.30898 1.05339 1.22797 0.94185 0.87176 1.01411 1.23225 0.99513 0.92943 0.87581 1.87962 1.63967 1.45490 1.34014 1.23042 0.91072 0.88825 0.99640 1.22365 0.99962 0.94966 0.87610 0.92875 0.91748 0.93466 0.79711 0.94721 0.89569 0.92733 0.88468 0.88907 0.87159 0.87761 0.87461 0.87015 0.89335 0.87037 0.92311 0.85412 0.92751 0.85661 0.89000 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 7.94 71.98 0.57 -4.86 16 2 C 0.13 4.64 3.48 45.34 0.16 4.80 16 3 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.17 6.42 3.46 46.18 0.16 6.58 16 5 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 6 N -0.74 -36.30 4.98 -317.32 -1.58 -37.88 16 7 C -0.33 -17.76 9.97 84.03 0.84 -16.92 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 C -0.11 -6.10 5.50 84.86 0.47 -5.64 16 10 N -0.98 -60.90 13.70 21.65 0.30 -60.61 16 11 Si 1.13 51.31 29.92 68.60 2.05 53.36 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 C -0.14 -4.53 6.79 32.06 0.22 -4.31 16 16 C 0.10 2.45 6.69 86.93 0.58 3.03 16 17 N -0.61 -17.24 3.08 -787.62 -2.43 -19.67 16 18 C 0.53 14.19 7.63 87.66 0.67 14.86 16 19 O -0.58 -18.80 14.89 -3.05 -0.05 -18.85 16 20 C -0.11 -2.17 4.00 29.85 0.12 -2.05 16 21 C -0.12 -1.97 3.36 29.85 0.10 -1.87 16 22 C 0.52 9.82 7.71 87.66 0.68 10.49 16 23 O -0.57 -14.62 15.45 -3.02 -0.05 -14.67 16 24 N -0.62 -9.06 3.01 -816.63 -2.46 -11.52 16 25 C 0.07 0.63 6.57 86.49 0.57 1.20 16 26 C 0.04 0.39 7.00 72.22 0.51 0.90 16 27 O -0.40 -5.11 10.74 -148.98 -1.60 -6.71 16 28 C 0.05 0.53 6.98 72.07 0.50 1.04 16 29 C 0.07 0.95 6.63 86.34 0.57 1.53 16 30 H 0.05 2.20 6.72 -2.39 -0.02 2.18 16 31 H 0.06 2.37 6.76 -2.39 -0.02 2.35 16 32 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 33 H 0.37 18.86 3.82 -92.71 -0.35 18.50 16 34 H 0.24 15.13 6.77 -92.71 -0.63 14.50 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 1.85 7.48 -2.39 -0.02 1.83 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 1.98 8.10 -2.39 -0.02 1.96 16 40 H 0.10 2.02 7.80 -2.39 -0.02 2.00 16 41 H 0.11 1.74 7.96 -2.38 -0.02 1.72 16 42 H 0.11 1.68 7.63 -2.39 -0.02 1.66 16 43 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.11 0.84 6.05 -2.39 -0.01 0.83 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.09 1.41 7.08 -2.39 -0.02 1.39 16 50 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -75.10 392.39 1.62 -73.47 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.73 Total: 34.28 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.71 Total: 8.78 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -6.17 Total: -129.68 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.69 Total: -40.22 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.36 kcal Total: -75.10 1.62 -73.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180075473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.703 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds