Wall clock time and date at job start Sat Apr 11 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00332 * 2 1 4 4 C 1.53005 * 109.47490 * 124.99684 * 3 2 1 5 5 O 1.42898 * 109.47095 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99669 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46931 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99974 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.47423 * 125.64706 * 0.02675 * 9 7 6 11 11 C 1.54906 * 104.83327 * 204.08999 * 10 9 7 12 12 C 1.55156 * 101.58293 * 322.99325 * 11 10 9 13 13 H 1.08996 * 110.71771 * 276.95718 * 12 11 10 14 14 N 1.46906 * 110.72105 * 153.86273 * 12 11 10 15 15 C 1.46901 * 110.99793 * 86.45499 * 14 12 11 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47027 * 125.65007 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.88064 * 298.39403 * 27 9 7 29 29 C 1.53001 * 109.88037 * 59.55780 * 27 9 7 30 30 H 1.08002 * 119.99932 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00344 * 359.97438 * 1 2 3 32 32 H 1.08008 * 120.00259 * 180.02562 * 2 1 3 33 33 H 1.09011 * 109.46539 * 5.00251 * 3 2 1 34 34 H 1.08999 * 109.47575 * 245.00616 * 3 2 1 35 35 H 1.08997 * 109.46667 * 60.00612 * 4 3 2 36 36 H 1.08995 * 109.47225 * 300.00553 * 4 3 2 37 37 H 1.09001 * 109.47262 * 60.00053 * 6 5 4 38 38 H 1.09002 * 109.46920 * 299.99840 * 6 5 4 39 39 H 1.09001 * 110.36733 * 85.25374 * 10 9 7 40 40 H 1.09000 * 110.46077 * 322.98073 * 10 9 7 41 41 H 1.09002 * 111.00768 * 204.91567 * 11 10 9 42 42 H 1.09004 * 111.03444 * 81.08078 * 11 10 9 43 43 H 1.00898 * 110.99995 * 210.40577 * 14 12 11 44 44 H 1.09002 * 109.47401 * 59.99808 * 15 14 12 45 45 H 1.09001 * 109.46874 * 299.99821 * 15 14 12 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46765 * 177.80901 * 29 27 9 49 49 H 1.09003 * 109.47419 * 297.80957 * 29 27 9 50 50 H 1.09003 * 109.46940 * 57.81309 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5709 1.1819 6 6 4.6886 2.6996 2.2511 7 6 5.3806 4.0347 2.1536 8 8 5.0969 4.8008 1.2571 9 7 6.3140 4.3780 3.0632 10 6 6.7533 3.5471 4.1990 11 6 7.3108 4.5546 5.2351 12 6 7.9955 5.6002 4.3158 13 1 8.9952 5.2699 4.0340 14 7 8.0498 6.9132 4.9724 15 6 9.2463 7.0306 5.8165 16 6 9.2679 8.3877 6.4715 17 8 8.3741 9.1790 6.2566 18 7 10.2797 8.7216 7.2968 19 6 10.2990 9.9560 7.8931 20 1 9.5036 10.6609 7.7010 21 6 11.3424 10.3005 8.7435 22 7 12.3104 9.4429 8.9767 23 14 11.3684 11.9821 9.5565 24 1 10.1728 12.7548 9.1337 25 1 11.3563 11.8186 11.0324 26 1 12.5970 12.7099 9.1492 27 6 7.0637 5.6425 3.0864 28 1 7.6551 5.7396 2.1760 29 6 6.0942 6.8199 3.2086 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3584 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 3.7399 0.5066 1.0921 36 1 2.4773 1.2356 2.1130 37 1 5.4280 1.9017 2.1831 38 1 4.1654 2.6299 3.2048 39 1 7.5348 2.8559 3.8835 40 1 5.9098 2.9988 4.6186 41 1 8.0373 4.0772 5.8927 42 1 6.5050 5.0093 5.8115 43 1 8.0117 7.6588 4.2936 44 1 10.1382 6.9102 5.2015 45 1 9.2269 6.2566 6.5838 46 1 10.9942 8.0886 7.4689 47 1 13.0386 9.6833 9.5708 48 1 6.6585 7.7508 3.2644 49 1 5.4395 6.8435 2.3374 50 1 5.4941 6.7042 4.1111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180253619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:59 Heat of formation + Delta-G solvation = -109.862290 kcal Electronic energy + Delta-G solvation = -28739.854006 eV Core-core repulsion = 24574.013328 eV Total energy + Delta-G solvation = -4165.840677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45144 -40.16332 -39.38842 -38.41241 -36.19648 -35.88314 -35.56405 -33.27145 -32.50200 -31.86975 -30.62253 -28.61547 -27.82763 -26.54053 -25.32898 -24.02823 -23.87175 -21.28363 -21.02157 -20.67779 -20.10429 -19.89099 -18.40386 -17.87336 -17.63703 -17.47262 -16.92726 -16.74431 -16.56243 -16.36006 -16.20650 -15.79367 -15.42640 -15.35503 -14.94060 -14.55136 -14.39245 -14.26488 -14.09621 -13.91641 -13.54777 -13.48871 -13.39399 -13.21006 -13.12845 -12.88766 -12.63881 -12.52215 -12.40157 -12.36492 -12.15311 -12.11543 -11.97859 -11.84073 -11.62799 -11.49901 -10.82300 -10.69706 -10.31968 -10.26686 -9.99370 -9.74116 -9.34148 -8.45827 -5.93910 1.32222 1.36988 1.42694 1.52962 1.56223 1.63876 2.07854 2.30037 2.81845 2.95233 3.22088 3.32476 3.52697 3.67377 3.73482 4.00126 4.03492 4.11507 4.17559 4.22869 4.26816 4.28975 4.32545 4.33946 4.45497 4.45890 4.49305 4.53886 4.60821 4.65229 4.70793 4.75831 4.90262 5.00789 5.02476 5.06392 5.10036 5.26221 5.29171 5.38899 5.42790 5.72979 5.85638 5.90854 6.08845 6.12274 6.33324 6.48318 6.62198 7.10806 7.14776 7.58753 8.14546 8.71684 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.001520 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892752 B =18422.242904 C =18650.306942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.095 4.095 4 C 0.064 3.936 5 O -0.402 6.402 6 C 0.055 3.945 7 C 0.520 3.480 8 O -0.574 6.574 9 N -0.610 5.610 10 C 0.096 3.904 11 C -0.120 4.120 12 C 0.080 3.920 13 H 0.080 0.920 14 N -0.669 5.669 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.139 3.861 28 H 0.069 0.931 29 C -0.145 4.145 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.345 0.655 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 -25.480 -11.791 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.133 4.133 4 C -0.012 4.012 5 O -0.321 6.321 6 C -0.024 4.024 7 C 0.310 3.690 8 O -0.453 6.453 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.159 4.159 12 C -0.031 4.031 13 H 0.098 0.902 14 N -0.304 5.304 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.197 1.197 27 C 0.035 3.965 28 H 0.087 0.913 29 C -0.203 4.203 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.167 0.833 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.754 -24.606 -11.973 30.626 hybrid contribution 1.160 1.005 -0.031 1.536 sum -12.594 -23.600 -12.004 29.320 Atomic orbital electron populations 1.24083 0.96026 1.02670 0.99898 1.22826 0.96097 0.97723 1.00950 1.20647 0.97829 0.96417 0.98377 1.22654 0.94279 0.85218 0.99051 1.87956 1.55163 1.39469 1.49531 1.22270 0.93588 0.94031 0.92527 1.20628 0.78800 0.89103 0.80497 1.90707 1.64451 1.54300 1.35814 1.48517 1.38766 1.18583 1.28656 1.22705 1.01426 0.93612 0.84754 1.22890 1.01077 0.94856 0.97032 1.22640 0.97906 0.90132 0.92381 0.90201 1.60381 1.39585 1.03963 1.26498 1.21585 0.92812 0.94163 0.98044 1.20942 0.82952 0.90625 0.83029 1.90507 1.39516 1.54463 1.66619 1.41912 1.22494 1.15468 1.41119 1.19681 1.08546 0.93140 1.24908 0.90527 1.25966 0.94638 1.02891 0.97520 1.69668 1.11740 1.36871 1.37729 0.84918 0.78180 0.77468 0.78067 1.19991 1.19587 1.19667 1.21510 0.92559 0.84447 0.98001 0.91251 1.21855 0.99502 0.97828 1.01125 0.86863 0.88797 0.85586 0.91863 0.90772 0.90902 0.91782 0.87002 0.87688 0.88169 0.87761 0.87596 0.91040 0.83333 0.91314 0.87111 0.76883 0.91331 0.91736 0.93633 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 14.32 67.79 0.97 -0.80 16 2 C -0.16 -1.53 9.52 25.65 0.24 -1.28 16 3 C -0.10 -1.26 6.03 29.85 0.18 -1.08 16 4 C 0.06 0.79 5.92 71.98 0.43 1.22 16 5 O -0.40 -8.25 9.88 -129.94 -1.28 -9.53 16 6 C 0.05 0.81 5.43 71.24 0.39 1.20 16 7 C 0.52 12.33 7.71 87.66 0.68 13.00 16 8 O -0.57 -19.80 15.41 15.99 0.25 -19.55 16 9 N -0.61 -11.92 3.08 -788.05 -2.43 -14.34 16 10 C 0.10 1.05 6.69 86.85 0.58 1.63 16 11 C -0.12 -1.85 6.71 31.98 0.21 -1.64 16 12 C 0.08 1.63 3.11 46.10 0.14 1.77 16 13 H 0.08 1.37 7.89 -2.39 -0.02 1.36 16 14 N -0.67 -19.47 5.21 -489.44 -2.55 -22.02 16 15 C 0.07 2.06 6.02 85.56 0.52 2.58 16 16 C 0.44 20.11 7.82 87.66 0.69 20.80 16 17 O -0.62 -34.18 15.78 -3.07 -0.05 -34.23 16 18 N -0.57 -28.61 5.29 -306.98 -1.62 -30.23 16 19 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 22 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.14 3.22 3.41 45.34 0.15 3.37 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 C -0.14 -4.12 8.40 71.98 0.60 -3.52 16 30 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.09 0.93 7.84 -2.91 -0.02 0.91 16 32 H 0.13 0.81 8.06 -2.91 -0.02 0.78 16 33 H 0.06 0.99 7.79 -2.38 -0.02 0.97 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 1.00 7.85 -2.39 -0.02 0.98 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.63 7.48 -2.39 -0.02 0.61 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.34 11.14 6.14 -89.70 -0.55 10.59 16 44 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 45 H 0.11 2.97 8.13 -2.39 -0.02 2.95 16 46 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 47 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 48 H 0.06 1.90 6.23 -2.39 -0.01 1.89 16 49 H 0.04 1.45 6.77 -2.39 -0.02 1.44 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -77.98 411.81 1.34 -76.64 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.34 Total: 37.76 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 7.06 Total: 19.25 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -6.32 Total: -115.05 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -1.09 Total: -63.31 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.98 1.34 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180253619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.225 kcal (2) G-P(sol) polarization free energy of solvation -77.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds