Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99930 * 2 1 4 4 O 1.42896 * 109.47220 * 134.72403 * 3 2 1 5 5 C 1.42902 * 113.99966 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47450 * 29.99341 * 5 4 3 7 7 C 1.53002 * 109.46957 * 269.99936 * 5 4 3 8 8 C 1.50698 * 109.47346 * 150.00027 * 5 4 3 9 9 O 1.21277 * 120.00094 * 13.11665 * 8 5 4 10 10 N 1.34777 * 120.00176 * 193.12439 * 8 5 4 11 11 C 1.47429 * 125.64612 * 4.97998 * 10 8 5 12 12 C 1.54696 * 104.93782 * 204.07640 * 11 10 8 13 13 C 1.55151 * 101.67889 * 323.27409 * 12 11 10 14 14 H 1.08996 * 110.72371 * 276.97665 * 13 12 11 15 15 N 1.46900 * 110.87353 * 153.77127 * 13 12 11 16 16 C 1.46894 * 110.99821 * 91.39108 * 15 13 12 17 17 C 1.50701 * 109.47024 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00152 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99923 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99544 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00338 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00295 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 359.97438 * 22 20 19 25 25 H 1.48512 * 109.47072 * 90.00047 * 24 22 20 26 26 H 1.48498 * 109.47260 * 209.99906 * 24 22 20 27 27 H 1.48502 * 109.47261 * 330.00394 * 24 22 20 28 28 C 1.47022 * 125.64905 * 185.28833 * 10 8 5 29 29 H 1.08997 * 109.88519 * 298.31817 * 28 10 8 30 30 C 1.53001 * 109.88107 * 59.33161 * 28 10 8 31 31 H 1.08003 * 120.00043 * 0.27906 * 1 2 3 32 32 H 1.08001 * 120.00379 * 180.28237 * 1 2 3 33 33 H 1.08005 * 119.99990 * 179.71490 * 2 1 3 34 34 H 1.09002 * 109.46727 * 254.72015 * 3 2 1 35 35 H 1.08998 * 109.47275 * 14.71661 * 3 2 1 36 36 H 1.08992 * 109.47647 * 65.73815 * 7 5 4 37 37 H 1.08999 * 109.47003 * 185.74571 * 7 5 4 38 38 H 1.09005 * 109.46652 * 305.73949 * 7 5 4 39 39 H 1.09002 * 110.36699 * 323.00333 * 11 10 8 40 40 H 1.09001 * 110.36539 * 85.33128 * 11 10 8 41 41 H 1.09005 * 111.09830 * 205.10768 * 12 11 10 42 42 H 1.09000 * 110.81540 * 81.32262 * 12 11 10 43 43 H 1.00902 * 110.99861 * 327.43773 * 15 13 12 44 44 H 1.08999 * 109.47074 * 300.00295 * 16 15 13 45 45 H 1.08996 * 109.47236 * 60.00355 * 16 15 13 46 46 H 0.96993 * 120.00512 * 0.02562 * 19 17 16 47 47 H 0.97003 * 120.00248 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.46938 * 58.54562 * 30 28 10 49 49 H 1.09004 * 109.46841 * 178.54208 * 30 28 10 50 50 H 1.08998 * 109.47340 * 298.54415 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1226 1.2436 0.9572 5 6 3.9040 2.4375 1.0369 6 1 3.2812 3.2967 0.7882 7 6 5.0703 2.3504 0.0505 8 6 4.4405 2.5942 2.4364 9 8 4.3865 1.6652 3.2142 10 7 4.9801 3.7669 2.8239 11 6 5.0159 5.0031 2.0214 12 6 6.2105 5.8092 2.5838 13 6 6.1198 5.4889 4.0992 14 1 5.3947 6.1394 4.5882 15 7 7.4367 5.6082 4.7391 16 6 7.6468 6.9647 5.2622 17 6 9.0052 7.0487 5.9092 18 8 9.7275 6.0746 5.9319 19 7 9.4180 8.2066 6.4618 20 6 10.6536 8.2830 7.0509 21 1 11.2963 7.4153 7.0718 22 6 11.0790 9.4765 7.6211 23 7 12.2631 9.5495 8.1862 24 14 9.9675 10.9774 7.5843 25 1 9.1126 10.9902 8.7986 26 1 10.7982 12.2079 7.5509 27 1 9.1080 10.9274 6.3743 28 6 5.6361 4.0234 4.1144 29 1 4.9252 3.8761 4.9274 30 6 6.8283 3.0804 4.2886 31 1 -0.5400 0.9353 -0.0046 32 1 -0.5401 -0.9353 0.0046 33 1 1.8500 -0.9353 0.0047 34 1 2.4796 1.4843 -0.9914 35 1 1.3843 2.1167 0.2611 36 1 4.6842 2.3397 -0.9687 37 1 5.7231 3.2132 0.1827 38 1 5.6346 1.4362 0.2349 39 1 5.1781 4.7678 0.9694 40 1 4.0898 5.5640 2.1472 41 1 6.0840 6.8765 2.4018 42 1 7.1508 5.4516 2.1644 43 1 8.1738 5.3486 4.1007 44 1 7.5894 7.6826 4.4440 45 1 6.8778 7.1926 6.0002 46 1 8.8406 8.9858 6.4434 47 1 12.5602 10.3829 8.5839 48 1 7.5309 3.2277 3.4684 49 1 7.3250 3.2937 5.2352 50 1 6.4784 2.0481 4.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180268416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -75.640043 kcal Electronic energy + Delta-G solvation = -29522.229529 eV Core-core repulsion = 25357.872839 eV Total energy + Delta-G solvation = -4164.356689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75091 -39.07165 -38.35379 -37.51000 -34.92533 -34.46874 -33.89085 -32.15457 -31.67758 -31.17653 -30.22257 -26.97078 -26.66049 -25.30921 -24.67549 -23.56468 -22.86760 -20.76141 -20.38342 -19.45649 -19.08140 -18.46530 -17.75535 -17.22878 -16.29225 -16.27566 -15.90976 -15.75343 -15.46379 -15.18776 -14.83531 -14.64742 -14.13814 -13.96217 -13.78221 -13.40189 -13.30853 -13.15714 -13.09691 -12.89282 -12.84490 -12.56247 -12.52402 -12.37545 -12.26440 -12.01738 -11.88336 -11.68107 -11.50025 -11.35898 -11.18805 -10.94401 -10.84555 -10.62354 -10.47198 -10.00187 -9.97104 -9.60004 -9.57794 -8.86053 -8.63678 -8.23207 -8.18326 -6.33299 -3.84986 1.67247 2.39299 2.45439 2.99130 3.04496 3.12819 3.46813 3.70364 3.92923 4.07132 4.08213 4.24797 4.36791 4.48075 4.50179 4.64105 4.66937 4.72362 4.82968 4.85447 4.95579 5.02177 5.03629 5.06654 5.19502 5.22410 5.22874 5.41022 5.43158 5.48048 5.56564 5.60857 5.68434 5.72523 5.73133 5.83726 5.90455 6.10853 6.11331 6.17385 6.34984 6.55934 6.68161 7.00210 7.28059 7.46051 7.55435 7.98605 8.12059 8.56916 8.92633 9.39787 9.79530 10.79780 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034555 B = 0.001791 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.111233 B =15626.755293 C =15891.488468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.353 6.353 5 C 0.076 3.924 6 H 0.082 0.918 7 C -0.172 4.172 8 C 0.531 3.469 9 O -0.512 6.512 10 N -0.615 5.615 11 C 0.096 3.904 12 C -0.166 4.166 13 C 0.083 3.917 14 H 0.094 0.906 15 N -0.653 5.653 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.146 3.854 29 H 0.079 0.921 30 C -0.152 4.152 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.356 0.644 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.049 0.951 49 H 0.089 0.911 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.126 -8.147 -20.260 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.014 3.986 6 H 0.099 0.901 7 C -0.230 4.230 8 C 0.318 3.682 9 O -0.386 6.386 10 N -0.353 5.353 11 C -0.028 4.028 12 C -0.206 4.206 13 C -0.029 4.029 14 H 0.112 0.888 15 N -0.285 5.285 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C 0.043 3.957 29 H 0.097 0.903 30 C -0.210 4.210 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.177 0.823 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.107 0.893 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.687 -9.697 -18.985 31.132 hybrid contribution -0.689 2.221 -1.030 2.543 sum -23.376 -7.476 -20.015 31.669 Atomic orbital electron populations 1.23848 0.95516 1.02362 0.99899 1.22704 0.95624 0.98124 1.00331 1.21668 0.88718 0.96265 0.92408 1.88094 1.44419 1.34640 1.59966 1.21845 0.94017 0.89392 0.93321 0.90053 1.22267 0.97892 1.04105 0.98692 1.19914 0.78187 0.81386 0.88698 1.90733 1.55070 1.38793 1.54022 1.48558 1.58337 1.10128 1.18236 1.22345 0.98999 0.85538 0.95876 1.23538 0.98694 1.00771 0.97606 1.22611 0.93126 0.95285 0.91877 0.88808 1.60026 1.02383 1.24573 1.41491 1.21753 0.97833 0.89815 0.99092 1.19679 0.88301 0.84107 0.84455 1.90577 1.56433 1.35980 1.61545 1.42199 1.17396 1.10567 1.52776 1.19435 0.91757 1.00139 1.32121 0.86267 1.25037 0.96275 0.97810 0.96996 1.69619 1.18024 1.27417 1.36981 0.86671 0.80754 0.83270 0.78641 1.19597 1.20207 1.19571 1.21517 0.94852 0.94812 0.84511 0.90342 1.21935 0.96624 0.98774 1.03668 0.88436 0.87648 0.86374 0.92088 0.92664 0.91197 0.90650 0.90683 0.90422 0.91046 0.89560 0.90016 0.82274 0.93616 0.89336 0.79715 0.91594 0.93197 0.89257 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.31 29.02 0.42 -0.63 16 2 C -0.15 -1.09 9.89 -36.02 -0.36 -1.44 16 3 C 0.09 0.62 6.16 36.01 0.22 0.84 16 4 O -0.35 -3.83 9.54 -54.79 -0.52 -4.35 16 5 C 0.08 0.67 2.41 -27.88 -0.07 0.61 16 6 H 0.08 0.51 7.49 -51.93 -0.39 0.12 16 7 C -0.17 -1.19 9.31 37.16 0.35 -0.85 16 8 C 0.53 6.51 6.88 -10.99 -0.08 6.43 16 9 O -0.51 -8.62 15.64 -14.00 -0.22 -8.84 16 10 N -0.62 -6.30 3.08 -163.14 -0.50 -6.80 16 11 C 0.10 0.64 6.41 -2.64 -0.02 0.63 16 12 C -0.17 -1.27 6.66 -24.70 -0.16 -1.43 16 13 C 0.08 0.85 3.15 -65.88 -0.21 0.64 16 14 H 0.09 0.87 7.82 -51.93 -0.41 0.46 16 15 N -0.65 -8.99 4.42 -106.06 -0.47 -9.46 16 16 C 0.05 0.71 6.03 -4.98 -0.03 0.68 16 17 C 0.45 9.72 7.82 -10.99 -0.09 9.63 16 18 O -0.56 -14.65 15.78 5.55 0.09 -14.56 16 19 N -0.59 -13.59 5.09 -10.96 -0.06 -13.64 16 20 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 24 Si 0.88 18.95 27.73 -169.99 -4.71 14.23 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 28 C 0.15 1.71 3.45 -66.95 -0.23 1.48 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 C -0.15 -2.05 8.27 37.16 0.31 -1.74 16 31 H 0.10 0.47 7.90 -52.48 -0.41 0.06 16 32 H 0.11 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 35 H 0.06 0.34 7.80 -51.93 -0.41 -0.07 16 36 H 0.07 0.35 8.01 -51.93 -0.42 -0.07 16 37 H 0.07 0.45 6.15 -51.93 -0.32 0.13 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.38 5.67 -51.93 -0.29 0.09 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.67 7.78 -51.93 -0.40 0.27 16 43 H 0.36 5.18 7.45 -39.29 -0.29 4.89 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 46 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 48 H 0.05 0.65 7.97 -51.93 -0.41 0.23 16 49 H 0.09 1.34 7.45 -51.93 -0.39 0.96 16 50 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -35.41 405.15 -7.80 -43.20 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.09 Total: 11.58 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.19 Total: 7.22 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.25 Total: -54.58 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.65 Total: -27.75 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.41 -7.80 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180268416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.437 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds