Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99930 * 2 1 4 4 O 1.42896 * 109.47220 * 134.72403 * 3 2 1 5 5 C 1.42902 * 113.99966 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47450 * 29.99341 * 5 4 3 7 7 C 1.53002 * 109.46957 * 269.99936 * 5 4 3 8 8 C 1.50698 * 109.47346 * 150.00027 * 5 4 3 9 9 O 1.21277 * 120.00094 * 13.11665 * 8 5 4 10 10 N 1.34777 * 120.00176 * 193.12439 * 8 5 4 11 11 C 1.47429 * 125.64612 * 4.97998 * 10 8 5 12 12 C 1.54696 * 104.93782 * 204.07640 * 11 10 8 13 13 C 1.55151 * 101.67889 * 323.27409 * 12 11 10 14 14 H 1.08996 * 110.72371 * 276.97665 * 13 12 11 15 15 N 1.46900 * 110.87353 * 153.77127 * 13 12 11 16 16 C 1.46894 * 110.99821 * 91.39108 * 15 13 12 17 17 C 1.50701 * 109.47024 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00152 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99923 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99544 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00338 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00295 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 359.97438 * 22 20 19 25 25 H 1.48512 * 109.47072 * 90.00047 * 24 22 20 26 26 H 1.48498 * 109.47260 * 209.99906 * 24 22 20 27 27 H 1.48502 * 109.47261 * 330.00394 * 24 22 20 28 28 C 1.47022 * 125.64905 * 185.28833 * 10 8 5 29 29 H 1.08997 * 109.88519 * 298.31817 * 28 10 8 30 30 C 1.53001 * 109.88107 * 59.33161 * 28 10 8 31 31 H 1.08003 * 120.00043 * 0.27906 * 1 2 3 32 32 H 1.08001 * 120.00379 * 180.28237 * 1 2 3 33 33 H 1.08005 * 119.99990 * 179.71490 * 2 1 3 34 34 H 1.09002 * 109.46727 * 254.72015 * 3 2 1 35 35 H 1.08998 * 109.47275 * 14.71661 * 3 2 1 36 36 H 1.08992 * 109.47647 * 65.73815 * 7 5 4 37 37 H 1.08999 * 109.47003 * 185.74571 * 7 5 4 38 38 H 1.09005 * 109.46652 * 305.73949 * 7 5 4 39 39 H 1.09002 * 110.36699 * 323.00333 * 11 10 8 40 40 H 1.09001 * 110.36539 * 85.33128 * 11 10 8 41 41 H 1.09005 * 111.09830 * 205.10768 * 12 11 10 42 42 H 1.09000 * 110.81540 * 81.32262 * 12 11 10 43 43 H 1.00902 * 110.99861 * 327.43773 * 15 13 12 44 44 H 1.08999 * 109.47074 * 300.00295 * 16 15 13 45 45 H 1.08996 * 109.47236 * 60.00355 * 16 15 13 46 46 H 0.96993 * 120.00512 * 0.02562 * 19 17 16 47 47 H 0.97003 * 120.00248 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.46938 * 58.54562 * 30 28 10 49 49 H 1.09004 * 109.46841 * 178.54208 * 30 28 10 50 50 H 1.08998 * 109.47340 * 298.54415 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1226 1.2436 0.9572 5 6 3.9040 2.4375 1.0369 6 1 3.2812 3.2967 0.7882 7 6 5.0703 2.3504 0.0505 8 6 4.4405 2.5942 2.4364 9 8 4.3865 1.6652 3.2142 10 7 4.9801 3.7669 2.8239 11 6 5.0159 5.0031 2.0214 12 6 6.2105 5.8092 2.5838 13 6 6.1198 5.4889 4.0992 14 1 5.3947 6.1394 4.5882 15 7 7.4367 5.6082 4.7391 16 6 7.6468 6.9647 5.2622 17 6 9.0052 7.0487 5.9092 18 8 9.7275 6.0746 5.9319 19 7 9.4180 8.2066 6.4618 20 6 10.6536 8.2830 7.0509 21 1 11.2963 7.4153 7.0718 22 6 11.0790 9.4765 7.6211 23 7 12.2631 9.5495 8.1862 24 14 9.9675 10.9774 7.5843 25 1 9.1126 10.9902 8.7986 26 1 10.7982 12.2079 7.5509 27 1 9.1080 10.9274 6.3743 28 6 5.6361 4.0234 4.1144 29 1 4.9252 3.8761 4.9274 30 6 6.8283 3.0804 4.2886 31 1 -0.5400 0.9353 -0.0046 32 1 -0.5401 -0.9353 0.0046 33 1 1.8500 -0.9353 0.0047 34 1 2.4796 1.4843 -0.9914 35 1 1.3843 2.1167 0.2611 36 1 4.6842 2.3397 -0.9687 37 1 5.7231 3.2132 0.1827 38 1 5.6346 1.4362 0.2349 39 1 5.1781 4.7678 0.9694 40 1 4.0898 5.5640 2.1472 41 1 6.0840 6.8765 2.4018 42 1 7.1508 5.4516 2.1644 43 1 8.1738 5.3486 4.1007 44 1 7.5894 7.6826 4.4440 45 1 6.8778 7.1926 6.0002 46 1 8.8406 8.9858 6.4434 47 1 12.5602 10.3829 8.5839 48 1 7.5309 3.2277 3.4684 49 1 7.3250 3.2937 5.2352 50 1 6.4784 2.0481 4.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180268416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -102.578833 kcal Electronic energy + Delta-G solvation = -29523.397682 eV Core-core repulsion = 25357.872839 eV Total energy + Delta-G solvation = -4165.524843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58524 -40.31756 -39.54851 -38.43152 -36.21525 -35.61863 -34.98950 -33.72953 -32.93915 -31.95903 -31.09354 -28.34371 -27.21207 -26.44939 -25.67401 -24.84491 -23.51804 -21.47092 -21.27620 -20.97123 -20.29916 -19.92147 -18.52508 -18.02855 -17.61101 -16.98890 -16.91845 -16.87496 -16.45981 -16.38604 -16.06325 -15.60774 -15.24409 -14.99129 -14.81943 -14.60305 -14.41762 -14.33525 -13.87332 -13.82254 -13.75513 -13.73216 -13.52746 -13.28794 -13.13684 -13.06699 -12.96969 -12.71813 -12.51911 -12.40799 -12.38370 -11.96321 -11.86029 -11.81424 -11.64566 -11.48530 -11.09348 -10.72537 -10.40453 -10.22209 -10.20027 -9.70748 -9.24740 -8.38951 -6.00080 1.17504 1.31772 1.38582 1.47053 1.51946 1.71049 2.00228 2.25628 2.73858 2.90500 3.17911 3.31260 3.41848 3.63067 3.76983 3.84902 3.94330 4.08212 4.11387 4.15099 4.19774 4.23293 4.35466 4.39216 4.44713 4.51068 4.55164 4.57768 4.61992 4.68164 4.72252 4.76745 4.78198 4.97606 5.01442 5.09937 5.12562 5.18928 5.38295 5.38696 5.55240 5.64853 5.69781 5.93674 6.08489 6.10518 6.37751 6.49326 6.62570 6.91347 7.11934 7.43271 8.00914 8.78851 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034555 B = 0.001791 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.111233 B =15626.755293 C =15891.488468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.176 4.176 3 C 0.082 3.918 4 O -0.389 6.389 5 C 0.079 3.921 6 H 0.118 0.882 7 C -0.167 4.167 8 C 0.521 3.479 9 O -0.574 6.574 10 N -0.611 5.611 11 C 0.093 3.907 12 C -0.158 4.158 13 C 0.089 3.911 14 H 0.116 0.884 15 N -0.675 5.675 16 C 0.065 3.935 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.225 1.225 28 C 0.144 3.856 29 H 0.063 0.937 30 C -0.140 4.140 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.348 0.652 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.391 0.609 47 H 0.278 0.722 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.094 -4.596 -23.116 35.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.007 3.993 4 O -0.309 6.309 5 C 0.018 3.982 6 H 0.135 0.865 7 C -0.224 4.224 8 C 0.310 3.690 9 O -0.453 6.453 10 N -0.346 5.346 11 C -0.029 4.029 12 C -0.197 4.197 13 C -0.022 4.022 14 H 0.134 0.866 15 N -0.307 5.307 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.148 1.148 28 C 0.040 3.960 29 H 0.081 0.919 30 C -0.199 4.199 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -26.691 -6.119 -21.889 35.057 hybrid contribution 0.592 0.931 -0.127 1.111 sum -26.099 -5.188 -22.016 34.536 Atomic orbital electron populations 1.24058 0.95099 1.03467 0.97929 1.22793 0.96309 0.98126 1.02228 1.21857 0.88267 0.96514 0.92672 1.88063 1.45581 1.35925 1.61289 1.21958 0.94959 0.90174 0.91067 0.86467 1.22259 0.97221 1.03418 0.99518 1.20743 0.77553 0.80963 0.89761 1.90701 1.57697 1.40939 1.55941 1.48593 1.57023 1.10972 1.17994 1.22677 0.99917 0.83718 0.96566 1.23515 0.98762 1.02588 0.94843 1.22607 0.91414 0.94077 0.94081 0.86601 1.59926 1.03811 1.24362 1.42614 1.21666 0.93199 0.91378 1.00478 1.21094 0.90290 0.82570 0.82514 1.90562 1.58785 1.37810 1.62912 1.42012 1.16075 1.12062 1.53126 1.19001 0.93516 0.98809 1.34518 0.92938 1.26146 0.98108 1.01774 0.95470 1.69814 1.20846 1.28920 1.38179 0.85344 0.78577 0.76644 0.80790 1.18407 1.20261 1.14845 1.21418 0.93619 0.95675 0.85284 0.91935 1.21761 0.97505 0.98048 1.02546 0.87051 0.86831 0.87546 0.90106 0.91211 0.88577 0.89315 0.93219 0.87931 0.88324 0.86698 0.90788 0.83126 0.89488 0.86591 0.77373 0.91234 0.93012 0.91394 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 14.31 67.79 0.97 -0.75 16 2 C -0.18 -2.44 9.89 25.65 0.25 -2.18 16 3 C 0.08 1.04 6.16 71.24 0.44 1.48 16 4 O -0.39 -8.18 9.54 -130.28 -1.24 -9.42 16 5 C 0.08 1.25 2.41 29.85 0.07 1.32 16 6 H 0.12 0.96 7.49 -2.39 -0.02 0.94 16 7 C -0.17 -1.93 9.31 71.98 0.67 -1.26 16 8 C 0.52 12.50 6.88 87.66 0.60 13.10 16 9 O -0.57 -20.35 15.64 15.68 0.25 -20.10 16 10 N -0.61 -11.36 3.08 -788.45 -2.43 -13.79 16 11 C 0.09 0.81 6.41 86.78 0.56 1.36 16 12 C -0.16 -1.66 6.66 31.91 0.21 -1.45 16 13 C 0.09 1.53 3.15 46.10 0.15 1.68 16 14 H 0.12 1.56 7.82 -2.39 -0.02 1.54 16 15 N -0.68 -17.36 4.42 -489.47 -2.17 -19.52 16 16 C 0.06 1.69 6.03 85.56 0.52 2.21 16 17 C 0.45 19.10 7.82 87.66 0.69 19.79 16 18 O -0.62 -33.32 15.78 -3.06 -0.05 -33.37 16 19 N -0.59 -26.69 5.09 -306.98 -1.56 -28.25 16 20 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 24 Si 0.97 37.61 27.73 68.60 1.90 39.51 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.23 -7.10 6.52 99.48 0.65 -6.45 16 28 C 0.14 3.26 3.45 45.34 0.16 3.42 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 C -0.14 -4.00 8.27 71.98 0.60 -3.41 16 31 H 0.11 0.80 7.90 -2.91 -0.02 0.78 16 32 H 0.11 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.08 0.65 8.01 -2.39 -0.02 0.63 16 35 H 0.07 0.65 7.80 -2.39 -0.02 0.63 16 36 H 0.10 0.62 8.01 -2.39 -0.02 0.60 16 37 H 0.09 0.76 6.15 -2.39 -0.01 0.75 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.10 0.45 5.67 -2.39 -0.01 0.43 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.07 0.95 7.78 -2.39 -0.02 0.93 16 43 H 0.35 9.85 7.45 -89.69 -0.67 9.18 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 46 H 0.39 14.26 5.76 -92.71 -0.53 13.72 16 47 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.05 1.40 7.97 -2.38 -0.02 1.38 16 49 H 0.07 2.19 7.45 -2.38 -0.02 2.18 16 50 H 0.03 1.11 6.91 -2.39 -0.02 1.10 16 Total: -1.00 -88.51 405.15 1.88 -86.63 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.31 Total: 37.51 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 7.20 Total: 16.72 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.86 Total: -117.48 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -1.05 Total: -62.89 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Total: -88.51 1.88 -86.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180268416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.949 kcal (2) G-P(sol) polarization free energy of solvation -88.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds