Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53190 * 109.48631 * 239.91102 * 2 1 3 5 5 N 1.46929 * 108.76543 * 185.39521 * 4 2 1 6 6 C 1.34773 * 120.63609 * 233.63547 * 5 4 2 7 7 O 1.21283 * 119.99581 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00076 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46750 * 179.97438 * 8 6 5 10 10 C 1.46097 * 118.72657 * 90.00453 * 9 8 6 11 11 C 1.53019 * 109.92460 * 161.61676 * 10 9 8 12 12 O 1.43238 * 108.67053 * 49.16128 * 11 10 9 13 13 C 1.42967 * 112.99213 * 291.63771 * 12 11 10 14 14 C 1.33870 * 118.73672 * 269.73376 * 9 8 6 15 15 O 1.21285 * 118.82791 * 1.90599 * 14 9 8 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09006 * 109.58476 * 65.62224 * 4 2 1 34 34 H 1.08993 * 109.59951 * 305.18521 * 4 2 1 35 35 H 1.08992 * 109.47339 * 300.00366 * 8 6 5 36 36 H 1.09004 * 109.46554 * 60.00899 * 8 6 5 37 37 H 1.08994 * 109.39587 * 281.75764 * 10 9 8 38 38 H 1.09005 * 109.39514 * 41.47374 * 10 9 8 39 39 H 1.09002 * 109.60269 * 168.92021 * 11 10 9 40 40 H 1.09003 * 109.60297 * 289.24595 * 11 10 9 41 41 H 1.08999 * 109.41527 * 169.69902 * 13 12 11 42 42 H 1.09001 * 109.41169 * 289.56596 * 13 12 11 43 43 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 44 44 H 1.09003 * 109.58269 * 66.17819 * 16 5 4 45 45 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 46 46 H 1.08994 * 109.49677 * 174.58495 * 17 16 5 47 47 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 48 48 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 49 49 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1698 6 6 4.2808 -0.3855 -2.1782 7 8 3.7725 0.1055 -3.1639 8 6 5.7803 -0.4997 -2.0810 9 7 6.3913 0.0480 -3.2947 10 6 6.7368 1.4672 -3.3279 11 6 7.7444 1.7325 -4.4485 12 8 7.2624 1.1237 -5.6521 13 6 7.2721 -0.3049 -5.5980 14 6 6.6166 -0.7722 -4.3284 15 8 6.2757 -1.9327 -4.2391 16 6 4.1054 -1.4263 0.0307 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7633 -0.1582 -2.1389 34 1 1.6053 -1.7219 -1.2978 35 1 6.1317 0.0583 -1.2132 36 1 6.0587 -1.5483 -1.9761 37 1 5.8361 2.0550 -3.5043 38 1 7.1742 1.7557 -2.3720 39 1 7.8497 2.8070 -4.5988 40 1 8.7104 1.3043 -4.1807 41 1 6.7310 -0.7037 -6.4561 42 1 8.3019 -0.6614 -5.6213 43 1 5.1896 -1.3240 -0.0141 44 1 3.8378 -2.4815 0.0867 45 1 3.9157 0.3394 1.2538 46 1 3.9336 -1.1891 2.1669 47 1 0.4167 0.0350 2.4434 48 1 1.9188 0.9830 2.5581 49 1 2.4132 -1.5965 3.5963 50 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184586775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -94.376323 kcal Electronic energy + Delta-G solvation = -30605.976588 eV Core-core repulsion = 26440.807433 eV Total energy + Delta-G solvation = -4165.169156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25953 -40.12799 -38.24611 -37.91637 -35.69096 -35.18246 -33.83635 -32.12859 -30.87440 -30.25175 -29.66270 -27.28913 -26.79850 -25.60141 -24.28234 -23.53501 -22.67613 -21.59023 -20.37281 -19.61440 -18.92562 -18.14927 -17.74715 -17.30443 -17.21461 -16.31912 -15.92948 -15.88965 -15.36672 -15.09480 -14.92734 -14.60582 -14.49172 -14.04563 -13.89522 -13.76610 -13.60597 -13.54412 -13.32367 -13.07802 -12.90119 -12.52732 -12.36683 -12.16053 -12.00146 -11.90864 -11.79900 -11.67212 -11.01902 -10.98684 -10.76984 -10.72789 -10.49037 -10.38977 -10.19966 -10.11829 -9.96595 -9.84499 -9.19144 -9.09246 -8.89112 -8.67378 -7.01075 -6.12575 -3.11769 2.05797 2.29988 2.47030 2.95481 3.26506 3.49829 3.53161 3.70679 3.86537 4.26134 4.28067 4.46460 4.61982 4.63235 4.67585 4.72066 4.80339 4.84651 4.90040 4.94268 4.99341 5.01641 5.11488 5.20681 5.33360 5.34266 5.43733 5.58160 5.62199 5.69438 5.72203 5.77002 5.82406 5.85419 5.92108 6.13928 6.16775 6.21697 6.27873 6.34646 6.39618 6.49115 6.73038 6.81857 6.89746 7.26287 7.63932 7.79034 8.02738 8.73745 9.21443 10.07652 10.22855 11.36051 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.002250 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.740100 B =12441.307754 C =12978.140103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.502 3.498 7 O -0.537 6.537 8 C 0.091 3.909 9 N -0.586 5.586 10 C 0.078 3.922 11 C 0.045 3.955 12 O -0.368 6.368 13 C 0.054 3.946 14 C 0.492 3.508 15 O -0.538 6.538 16 C 0.105 3.895 17 C -0.125 4.125 18 C -0.090 4.090 19 H 0.071 0.929 20 C 0.162 3.838 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.063 0.937 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.295 1.295 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.132 0.868 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.025 0.975 48 H 0.017 0.983 49 H 0.366 0.634 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 6.694 -21.326 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.288 3.712 7 O -0.414 6.414 8 C -0.036 4.036 9 N -0.320 5.320 10 C -0.045 4.045 11 C -0.032 4.032 12 O -0.286 6.286 13 C -0.025 4.025 14 C 0.280 3.720 15 O -0.415 6.415 16 C -0.018 4.018 17 C -0.163 4.163 18 C -0.109 4.109 19 H 0.090 0.910 20 C 0.035 3.965 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.081 0.919 24 C -0.244 4.244 25 N -0.591 5.591 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.150 0.850 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.043 0.957 48 H 0.035 0.965 49 H 0.199 0.801 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.187 6.343 -20.338 23.614 hybrid contribution 0.023 0.048 -1.184 1.185 sum 10.210 6.392 -21.521 24.663 Atomic orbital electron populations 1.21832 0.94317 1.02235 1.02102 1.21443 0.96193 0.99821 0.94058 0.90943 1.21695 0.78676 1.00912 0.99092 1.48147 1.07127 1.60597 1.18187 1.20984 0.89637 0.77834 0.82717 1.90684 1.75164 1.44711 1.30837 1.21458 0.90760 1.03174 0.88169 1.47053 1.60357 1.09776 1.14767 1.22263 1.00425 0.81184 1.00617 1.23013 0.95608 1.00430 0.84128 1.88219 1.85988 1.17883 1.36486 1.22810 1.01758 0.81882 0.96091 1.21022 0.79241 0.86151 0.85572 1.90758 1.51381 1.17961 1.81392 1.21902 0.97708 0.97849 0.84355 1.21929 0.96221 1.01103 0.97059 1.21359 0.94626 1.00219 0.94729 0.91044 1.20684 0.96762 0.93907 0.85137 1.42383 1.66029 1.28691 1.01781 1.20025 1.31990 1.08816 0.85228 0.91895 1.25759 0.99591 0.96624 1.02378 1.70898 1.40039 1.23102 1.25022 0.83249 0.75408 0.74903 0.75429 1.21028 1.22313 1.22291 0.91309 0.92909 0.92492 0.89268 0.91509 0.87169 0.86521 0.89998 0.89343 0.86434 0.91683 0.85043 0.89116 0.90140 0.90821 0.91662 0.89597 0.95692 0.96532 0.80073 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 2 C -0.10 -1.24 2.41 -90.50 -0.22 -1.46 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.52 5.72 -3.71 -0.02 1.50 16 5 N -0.61 -7.61 2.97 -172.76 -0.51 -8.13 16 6 C 0.50 6.74 7.76 -10.99 -0.09 6.66 16 7 O -0.54 -9.08 15.84 5.55 0.09 -8.99 16 8 C 0.09 0.92 4.12 -5.19 -0.02 0.90 16 9 N -0.59 -5.94 2.32 -175.79 -0.41 -6.35 16 10 C 0.08 0.54 6.68 -4.25 -0.03 0.51 16 11 C 0.05 0.24 6.89 37.17 0.26 0.50 16 12 O -0.37 -3.08 10.86 -35.23 -0.38 -3.47 16 13 C 0.05 0.44 6.99 35.83 0.25 0.69 16 14 C 0.49 5.69 7.58 -11.57 -0.09 5.61 16 15 O -0.54 -8.17 16.38 5.55 0.09 -8.08 16 16 C 0.10 1.16 6.34 -3.71 -0.02 1.14 16 17 C -0.12 -1.70 5.25 -26.61 -0.14 -1.84 16 18 C -0.09 -1.36 1.73 -90.58 -0.16 -1.52 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.16 5.41 -4.05 -0.02 3.14 16 21 N -0.74 -18.15 5.32 -59.91 -0.32 -18.47 16 22 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 23 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 25 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 26 Si 1.08 25.69 29.92 -169.99 -5.09 20.61 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.30 -6.75 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.91 6.29 -51.93 -0.33 0.59 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 0.78 7.48 -51.93 -0.39 0.40 16 36 H 0.12 1.20 7.08 -51.93 -0.37 0.84 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.39 7.99 -51.93 -0.41 -0.03 16 39 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.25 8.10 -51.93 -0.42 -0.17 16 41 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 1.33 7.15 -51.93 -0.37 0.96 16 47 H 0.03 0.50 6.14 -51.93 -0.32 0.18 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.37 9.02 5.68 -40.82 -0.23 8.79 16 50 H 0.25 7.54 6.77 -40.82 -0.28 7.27 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -37.26 390.97 -8.16 -45.43 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.07 Total: 6.00 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.22 Total: 3.56 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.48 Total: -60.94 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.20 Total: -20.54 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.26 -8.16 -45.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.951 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds