Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53190 * 109.48631 * 239.91102 * 2 1 3 5 5 N 1.46929 * 108.76543 * 185.39521 * 4 2 1 6 6 C 1.34773 * 120.63609 * 233.63547 * 5 4 2 7 7 O 1.21283 * 119.99581 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00076 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46750 * 179.97438 * 8 6 5 10 10 C 1.46097 * 118.72657 * 90.00453 * 9 8 6 11 11 C 1.53019 * 109.92460 * 161.61676 * 10 9 8 12 12 O 1.43238 * 108.67053 * 49.16128 * 11 10 9 13 13 C 1.42967 * 112.99213 * 291.63771 * 12 11 10 14 14 C 1.33870 * 118.73672 * 269.73376 * 9 8 6 15 15 O 1.21285 * 118.82791 * 1.90599 * 14 9 8 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09006 * 109.58476 * 65.62224 * 4 2 1 34 34 H 1.08993 * 109.59951 * 305.18521 * 4 2 1 35 35 H 1.08992 * 109.47339 * 300.00366 * 8 6 5 36 36 H 1.09004 * 109.46554 * 60.00899 * 8 6 5 37 37 H 1.08994 * 109.39587 * 281.75764 * 10 9 8 38 38 H 1.09005 * 109.39514 * 41.47374 * 10 9 8 39 39 H 1.09002 * 109.60269 * 168.92021 * 11 10 9 40 40 H 1.09003 * 109.60297 * 289.24595 * 11 10 9 41 41 H 1.08999 * 109.41527 * 169.69902 * 13 12 11 42 42 H 1.09001 * 109.41169 * 289.56596 * 13 12 11 43 43 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 44 44 H 1.09003 * 109.58269 * 66.17819 * 16 5 4 45 45 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 46 46 H 1.08994 * 109.49677 * 174.58495 * 17 16 5 47 47 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 48 48 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 49 49 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1698 6 6 4.2808 -0.3855 -2.1782 7 8 3.7725 0.1055 -3.1639 8 6 5.7803 -0.4997 -2.0810 9 7 6.3913 0.0480 -3.2947 10 6 6.7368 1.4672 -3.3279 11 6 7.7444 1.7325 -4.4485 12 8 7.2624 1.1237 -5.6521 13 6 7.2721 -0.3049 -5.5980 14 6 6.6166 -0.7722 -4.3284 15 8 6.2757 -1.9327 -4.2391 16 6 4.1054 -1.4263 0.0307 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7633 -0.1582 -2.1389 34 1 1.6053 -1.7219 -1.2978 35 1 6.1317 0.0583 -1.2132 36 1 6.0587 -1.5483 -1.9761 37 1 5.8361 2.0550 -3.5043 38 1 7.1742 1.7557 -2.3720 39 1 7.8497 2.8070 -4.5988 40 1 8.7104 1.3043 -4.1807 41 1 6.7310 -0.7037 -6.4561 42 1 8.3019 -0.6614 -5.6213 43 1 5.1896 -1.3240 -0.0141 44 1 3.8378 -2.4815 0.0867 45 1 3.9157 0.3394 1.2538 46 1 3.9336 -1.1891 2.1669 47 1 0.4167 0.0350 2.4434 48 1 1.9188 0.9830 2.5581 49 1 2.4132 -1.5965 3.5963 50 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184586775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -120.906755 kcal Electronic energy + Delta-G solvation = -30607.127034 eV Core-core repulsion = 26440.807433 eV Total energy + Delta-G solvation = -4166.319601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08351 -41.11498 -39.31973 -38.74421 -36.87303 -36.41648 -35.22838 -33.53863 -31.93078 -31.45570 -30.47302 -28.24772 -28.13284 -26.54989 -25.42863 -24.84072 -23.93545 -22.92538 -21.42960 -20.62445 -19.79338 -19.35902 -18.83174 -18.57583 -18.08856 -17.12003 -16.95206 -16.71184 -16.61944 -16.20272 -16.01652 -15.73452 -15.60607 -15.36884 -15.25365 -14.88636 -14.68228 -14.49956 -14.37648 -14.15636 -13.91998 -13.88071 -13.22590 -13.18681 -13.01037 -12.87094 -12.79476 -12.69741 -12.56660 -12.30456 -12.09841 -11.90693 -11.81013 -11.68951 -11.61791 -11.43980 -11.18356 -11.13329 -10.88541 -10.55328 -9.92877 -9.76242 -9.07793 -8.38607 -5.31946 1.21852 1.44777 1.58864 1.59138 1.68183 1.84848 2.01511 2.71394 2.77443 3.23825 3.34743 3.40086 3.56707 3.65442 3.73940 3.77064 3.90728 3.94101 4.06379 4.12814 4.16158 4.19751 4.23854 4.29468 4.35335 4.41734 4.44124 4.53305 4.56865 4.64820 4.69869 4.71102 4.75338 4.82371 4.89706 4.99405 5.01997 5.03248 5.11681 5.19100 5.26195 5.40497 5.49836 5.59639 5.76129 6.18047 6.25407 6.51961 6.82535 7.00529 7.11541 8.02295 8.12931 9.13733 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.002250 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.740100 B =12441.307754 C =12978.140103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.606 5.606 6 C 0.497 3.503 7 O -0.578 6.578 8 C 0.090 3.910 9 N -0.588 5.588 10 C 0.072 3.928 11 C 0.043 3.957 12 O -0.386 6.386 13 C 0.058 3.942 14 C 0.482 3.518 15 O -0.585 6.585 16 C 0.110 3.890 17 C -0.118 4.118 18 C -0.081 4.081 19 H 0.065 0.935 20 C 0.163 3.837 21 N -0.753 5.753 22 C -0.334 4.334 23 H 0.062 0.938 24 C -0.102 4.102 25 N -0.974 5.974 26 Si 1.126 2.874 27 H -0.292 1.292 28 H -0.278 1.278 29 H -0.280 1.280 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.022 0.978 48 H 0.012 0.988 49 H 0.362 0.638 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 7.931 -21.579 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.339 5.339 6 C 0.285 3.715 7 O -0.458 6.458 8 C -0.037 4.037 9 N -0.319 5.319 10 C -0.049 4.049 11 C -0.033 4.033 12 O -0.304 6.304 13 C -0.021 4.021 14 C 0.271 3.729 15 O -0.466 6.466 16 C -0.012 4.012 17 C -0.157 4.157 18 C -0.100 4.100 19 H 0.083 0.917 20 C 0.037 3.963 21 N -0.398 5.398 22 C -0.466 4.466 23 H 0.080 0.920 24 C -0.294 4.294 25 N -0.622 5.622 26 Si 0.951 3.049 27 H -0.218 1.218 28 H -0.204 1.204 29 H -0.206 1.206 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.030 0.970 49 H 0.195 0.805 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.393 7.634 -20.611 24.756 hybrid contribution -0.401 -0.266 -1.137 1.234 sum 10.992 7.368 -21.747 25.457 Atomic orbital electron populations 1.21808 0.93665 1.02467 1.02334 1.21316 0.96692 0.99253 0.93031 0.91264 1.21617 0.79257 1.00962 0.98290 1.48229 1.06993 1.60207 1.18464 1.21616 0.91033 0.76800 0.82017 1.90664 1.76145 1.46594 1.32357 1.21595 0.88368 1.03996 0.89691 1.47262 1.59355 1.10924 1.14368 1.22513 1.00315 0.79039 1.03066 1.23279 0.95763 1.01800 0.82480 1.88200 1.86428 1.17790 1.37986 1.22840 1.02937 0.82068 0.94229 1.21721 0.78801 0.85737 0.86654 1.90725 1.53559 1.19925 1.82352 1.21941 0.99376 0.97434 0.82414 1.21823 0.94967 1.01337 0.97553 1.21240 0.95764 0.99443 0.93503 0.91674 1.20800 0.96600 0.93525 0.85374 1.42550 1.65953 1.28980 1.02305 1.20357 1.31026 1.08460 0.86735 0.92010 1.27132 0.99660 0.96485 1.06099 1.70996 1.42012 1.24558 1.24642 0.82650 0.75964 0.75012 0.71325 1.21826 1.20401 1.20638 0.92440 0.91261 0.92293 0.90126 0.90986 0.83576 0.86549 0.91932 0.86186 0.84105 0.89514 0.85071 0.86289 0.87020 0.90395 0.91519 0.91464 0.95975 0.97023 0.80480 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.82 71.98 0.63 -2.81 16 2 C -0.08 -2.10 2.41 -10.72 -0.03 -2.13 16 3 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 3.02 5.72 86.36 0.49 3.51 16 5 N -0.61 -14.47 2.97 -818.88 -2.43 -16.91 16 6 C 0.50 12.87 7.76 87.66 0.68 13.55 16 7 O -0.58 -19.53 15.84 -3.04 -0.05 -19.57 16 8 C 0.09 1.65 4.12 85.63 0.35 2.00 16 9 N -0.59 -10.99 2.32 -828.97 -1.92 -12.91 16 10 C 0.07 0.84 6.68 86.46 0.58 1.42 16 11 C 0.04 0.34 6.89 71.99 0.50 0.84 16 12 O -0.39 -5.79 10.86 -148.98 -1.62 -7.41 16 13 C 0.06 0.87 6.99 71.12 0.50 1.37 16 14 C 0.48 10.78 7.58 87.68 0.66 11.44 16 15 O -0.58 -17.85 16.38 -3.05 -0.05 -17.90 16 16 C 0.11 2.26 6.34 86.36 0.55 2.81 16 17 C -0.12 -3.12 5.25 30.67 0.16 -2.96 16 18 C -0.08 -2.39 1.73 -10.77 -0.02 -2.41 16 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 20 C 0.16 6.35 5.41 86.38 0.47 6.81 16 21 N -0.75 -37.04 5.32 -343.47 -1.83 -38.86 16 22 C -0.33 -18.67 9.99 84.03 0.84 -17.83 16 23 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 24 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 25 N -0.97 -59.80 13.70 21.65 0.30 -59.50 16 26 Si 1.13 51.34 29.92 68.60 2.05 53.39 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 29 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 30 H 0.06 1.49 6.29 -2.39 -0.02 1.48 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 2.19 7.01 -2.38 -0.02 2.18 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.15 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.12 2.21 7.08 -2.38 -0.02 2.19 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.12 0.62 7.99 -2.38 -0.02 0.60 16 39 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.35 8.10 -2.39 -0.02 0.33 16 41 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.62 5.93 -2.39 -0.01 1.60 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 46 H 0.07 2.06 7.15 -2.39 -0.02 2.04 16 47 H 0.02 0.89 6.14 -2.39 -0.01 0.87 16 48 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.36 18.17 5.68 -92.71 -0.53 17.65 16 50 H 0.25 14.87 6.77 -92.71 -0.63 14.24 16 Total: -1.00 -82.03 390.97 1.84 -80.19 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.56 Total: 29.26 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.83 Total: 10.23 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.89 Total: -128.19 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.72 Total: -44.88 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -82.03 1.84 -80.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.720 kcal (2) G-P(sol) polarization free energy of solvation -82.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds