Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.33140 * 2 1 4 4 C 1.54481 * 110.37412 * 237.75156 * 2 1 3 5 5 C 1.54503 * 104.06445 * 217.08080 * 4 2 1 6 6 C 1.54482 * 104.06349 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.37315 * 265.15262 * 6 5 4 8 8 C 1.50700 * 110.37102 * 142.81345 * 6 5 4 9 9 O 1.21282 * 119.99634 * 245.00075 * 8 6 5 10 10 N 1.34767 * 120.00182 * 65.00398 * 8 6 5 11 11 C 1.47025 * 125.65044 * 359.68713 * 10 8 6 12 12 C 1.54329 * 107.26631 * 178.85266 * 11 10 8 13 13 C 1.55156 * 103.02412 * 338.14168 * 12 11 10 14 14 H 1.09005 * 111.00386 * 277.23612 * 13 12 11 15 15 N 1.46901 * 111.03661 * 153.39767 * 13 12 11 16 16 C 1.46901 * 110.99360 * 191.74035 * 15 13 12 17 17 C 1.46892 * 111.00091 * 67.78787 * 15 13 12 18 18 C 1.50701 * 109.47251 * 189.99796 * 17 15 13 19 19 O 1.21295 * 119.99730 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00241 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99886 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00123 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99880 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00133 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46751 * 90.00356 * 25 23 21 27 27 H 1.48504 * 109.47430 * 210.00104 * 25 23 21 28 28 H 1.48496 * 109.47292 * 330.00308 * 25 23 21 29 29 C 1.47431 * 125.65078 * 180.02562 * 10 8 6 30 30 O 1.44428 * 110.46595 * 122.31356 * 2 1 3 31 31 H 1.09003 * 109.46683 * 180.70325 * 1 2 3 32 32 H 1.09002 * 109.47180 * 300.69767 * 1 2 3 33 33 H 1.08996 * 109.47407 * 60.70027 * 1 2 3 34 34 H 1.09007 * 110.50806 * 335.72406 * 4 2 1 35 35 H 1.08998 * 110.51350 * 98.28882 * 4 2 1 36 36 H 1.08994 * 110.51469 * 118.64075 * 5 4 2 37 37 H 1.09002 * 110.51162 * 241.21807 * 5 4 2 38 38 H 1.09002 * 109.88308 * 298.40213 * 11 10 8 39 39 H 1.09003 * 109.87786 * 59.56191 * 11 10 8 40 40 H 1.09002 * 110.84635 * 219.67275 * 12 11 10 41 41 H 1.09004 * 110.51801 * 96.45688 * 12 11 10 42 42 H 1.08995 * 109.47558 * 60.00310 * 16 15 13 43 43 H 1.09001 * 109.46488 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47119 * 299.99569 * 16 15 13 45 45 H 1.09007 * 109.47365 * 309.99663 * 17 15 13 46 46 H 1.09004 * 109.47508 * 69.99630 * 17 15 13 47 47 H 0.96999 * 119.99888 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00297 * 180.02562 * 24 23 21 49 49 H 1.09003 * 110.36125 * 322.92596 * 29 10 8 50 50 H 1.09000 * 110.36697 * 85.25095 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0679 -0.7727 -1.2248 5 6 3.3194 -1.5027 -0.6882 6 6 3.3902 -1.0841 0.7971 7 1 4.0542 -0.2284 0.9190 8 6 3.8585 -2.2382 1.6456 9 8 3.1148 -2.7252 2.4706 10 7 5.1037 -2.7289 1.4877 11 6 6.1018 -2.2399 0.5253 12 6 7.3807 -3.0803 0.7250 13 6 7.2192 -3.6253 2.1687 14 1 7.5443 -2.8884 2.9032 15 7 7.9459 -4.8906 2.3390 16 6 7.5735 -5.5457 3.6000 17 6 9.3975 -4.6780 2.2648 18 6 10.0975 -6.0108 2.1966 19 8 9.4507 -7.0369 2.2082 20 7 11.4421 -6.0628 2.1217 21 6 12.0789 -7.2753 2.0592 22 1 11.5030 -8.1888 2.0703 23 6 13.4652 -7.3288 1.9814 24 7 14.1660 -6.2172 1.9684 25 14 14.3328 -8.9809 1.8969 26 1 14.4856 -9.3876 0.4769 27 1 15.6731 -8.8691 2.5266 28 1 13.5297 -9.9994 2.6199 29 6 5.6882 -3.8496 2.2466 30 8 2.0350 -0.7233 1.1436 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3634 0.5246 0.8837 33 1 -0.3634 0.5029 -0.8961 34 1 1.3283 -1.4917 -1.5776 35 1 2.3388 -0.0821 -2.0233 36 1 3.1988 -2.5824 -0.7757 37 1 4.2112 -1.1745 -1.2222 38 1 5.7288 -2.3646 -0.4912 39 1 6.3175 -1.1887 0.7169 40 1 8.2711 -2.4565 0.6457 41 1 7.4165 -3.8985 0.0056 42 1 6.5038 -5.7545 3.5990 43 1 8.1256 -6.4801 3.7008 44 1 7.8147 -4.8889 4.4357 45 1 9.6346 -4.0971 1.3734 46 1 9.7313 -4.1372 3.1504 47 1 11.9594 -5.2422 2.1121 48 1 15.1337 -6.2546 1.9137 49 1 5.3530 -3.8214 3.2834 50 1 5.4200 -4.8004 1.7860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192446361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -99.823635 kcal Electronic energy + Delta-G solvation = -29802.357856 eV Core-core repulsion = 25636.952487 eV Total energy + Delta-G solvation = -4165.405369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83008 -39.52739 -38.53079 -37.53947 -35.52762 -33.85913 -32.73167 -32.35497 -31.27173 -30.87957 -29.34717 -27.63815 -26.96393 -25.25532 -24.01741 -23.13973 -22.41678 -21.49518 -20.33638 -19.67775 -19.12031 -17.87614 -17.67871 -16.88927 -16.78514 -16.40584 -15.83457 -15.55755 -15.07188 -14.75313 -14.50893 -14.34406 -14.24806 -14.08804 -13.87014 -13.59840 -13.53397 -13.20310 -12.95570 -12.80831 -12.71872 -12.59816 -12.25084 -12.20688 -11.94993 -11.85825 -11.53017 -11.45532 -11.33989 -11.22497 -11.15915 -11.01534 -10.95804 -10.80783 -10.40727 -10.35267 -10.23513 -9.83420 -9.49370 -8.87630 -8.49399 -8.01337 -7.91611 -6.43641 -3.84376 2.35243 2.43330 3.16569 3.25506 3.31177 3.50294 3.87857 3.90660 3.95530 4.12597 4.21254 4.34774 4.38688 4.45853 4.53851 4.65406 4.77411 4.82277 4.93354 5.00734 5.04309 5.10372 5.15196 5.20942 5.25460 5.27651 5.35015 5.42746 5.50503 5.58208 5.61419 5.62389 5.68655 5.74189 5.75734 5.82935 5.85949 5.92096 6.01347 6.07459 6.25787 6.39466 6.53361 7.15372 7.26069 7.31652 7.53639 7.93271 8.04526 8.59777 9.16451 9.52359 10.04162 10.74043 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.001828 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.252824 B =15312.266694 C =15667.370528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.150 4.150 5 C -0.145 4.145 6 C 0.064 3.936 7 H 0.094 0.906 8 C 0.534 3.466 9 O -0.519 6.519 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.126 4.126 13 C 0.069 3.931 14 H 0.056 0.944 15 N -0.506 5.506 16 C 0.018 3.982 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.118 3.882 30 O -0.342 6.342 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.016 0.984 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.078 0.922 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 16.992 -6.734 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.183 4.183 6 C 0.003 3.997 7 H 0.112 0.888 8 C 0.321 3.679 9 O -0.394 6.394 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.164 4.164 13 C -0.041 4.041 14 H 0.074 0.926 15 N -0.231 5.231 16 C -0.129 4.129 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.004 4.004 30 O -0.260 6.260 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.034 0.966 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.861 15.728 -6.447 26.142 hybrid contribution 1.382 0.445 0.365 1.498 sum -18.479 16.173 -6.081 25.299 Atomic orbital electron populations 1.21797 0.92777 1.03257 1.02533 1.23082 0.95799 0.95403 0.84891 0.91038 1.23020 0.97438 0.99905 0.98362 1.22939 0.99438 1.02371 0.93577 1.22739 0.87064 0.96043 0.93866 0.88824 1.19802 0.80277 0.83976 0.83814 1.90744 1.53246 1.60054 1.35364 1.48325 1.12671 1.35182 1.39038 1.22208 0.88722 0.98547 0.93066 1.22742 0.96268 1.00003 0.97399 1.22785 0.93004 0.91600 0.96725 0.92626 1.61630 1.04986 1.19995 1.36453 1.22593 1.01697 1.00815 0.87818 1.21871 0.87603 0.97481 1.01568 1.19695 0.82911 0.89957 0.84516 1.90495 1.65044 1.35376 1.55145 1.41859 1.04548 1.09400 1.64256 1.19699 0.89541 0.86238 1.47351 0.87893 1.25253 0.96496 0.98832 0.97330 1.69606 1.07409 1.26785 1.50529 0.85861 0.78376 0.81610 0.78466 1.20406 1.20962 1.19432 1.22239 0.91551 0.89628 0.97029 1.89298 1.24771 1.74318 1.37656 0.91566 0.91676 0.90972 0.90136 0.90021 0.90004 0.89340 0.90794 0.91274 0.89728 0.88812 0.91891 0.88273 0.96550 0.89281 0.93390 0.77521 0.91887 0.90391 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.52 37.16 0.35 -0.58 16 2 C 0.07 0.49 3.92 -25.95 -0.10 0.39 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.88 6.63 -25.17 -0.17 -1.04 16 5 C -0.15 -1.00 5.39 -25.16 -0.14 -1.13 16 6 C 0.06 0.61 3.14 -27.11 -0.09 0.53 16 7 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.53 6.89 7.14 -10.99 -0.08 6.81 16 9 O -0.52 -9.07 16.81 -13.67 -0.23 -9.30 16 10 N -0.62 -6.84 3.33 -170.50 -0.57 -7.41 16 11 C 0.10 0.77 6.11 -3.06 -0.02 0.75 16 12 C -0.13 -1.20 5.61 -24.89 -0.14 -1.34 16 13 C 0.07 0.83 2.71 -65.55 -0.18 0.65 16 14 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 15 N -0.51 -7.92 4.40 -233.74 -1.03 -8.95 16 16 C 0.02 0.29 8.93 60.07 0.54 0.83 16 17 C 0.05 0.77 5.36 -4.98 -0.03 0.75 16 18 C 0.44 10.08 7.47 -10.99 -0.08 10.00 16 19 O -0.58 -15.06 13.91 5.54 0.08 -14.98 16 20 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.12 1.47 5.07 -2.52 -0.01 1.46 16 30 O -0.34 -3.98 10.61 -54.46 -0.58 -4.56 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.66 7.86 -51.93 -0.41 0.26 16 37 H 0.09 0.40 7.25 -51.93 -0.38 0.02 16 38 H 0.07 0.47 6.49 -51.93 -0.34 0.13 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 43 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 1.31 7.01 -51.92 -0.36 0.95 16 46 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 47 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 48 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 50 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -34.11 396.57 -9.37 -43.48 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.28 Total: 7.03 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.38 Total: 10.25 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.93 Total: -53.63 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.73 Total: -28.84 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.11 -9.37 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192446361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.342 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds