Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.33140 * 2 1 4 4 C 1.54481 * 110.37412 * 237.75156 * 2 1 3 5 5 C 1.54503 * 104.06445 * 217.08080 * 4 2 1 6 6 C 1.54482 * 104.06349 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.37315 * 265.15262 * 6 5 4 8 8 C 1.50700 * 110.37102 * 142.81345 * 6 5 4 9 9 O 1.21282 * 119.99634 * 245.00075 * 8 6 5 10 10 N 1.34767 * 120.00182 * 65.00398 * 8 6 5 11 11 C 1.47025 * 125.65044 * 359.68713 * 10 8 6 12 12 C 1.54329 * 107.26631 * 178.85266 * 11 10 8 13 13 C 1.55156 * 103.02412 * 338.14168 * 12 11 10 14 14 H 1.09005 * 111.00386 * 277.23612 * 13 12 11 15 15 N 1.46901 * 111.03661 * 153.39767 * 13 12 11 16 16 C 1.46901 * 110.99360 * 191.74035 * 15 13 12 17 17 C 1.46892 * 111.00091 * 67.78787 * 15 13 12 18 18 C 1.50701 * 109.47251 * 189.99796 * 17 15 13 19 19 O 1.21295 * 119.99730 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00241 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99886 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00123 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99880 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00133 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46751 * 90.00356 * 25 23 21 27 27 H 1.48504 * 109.47430 * 210.00104 * 25 23 21 28 28 H 1.48496 * 109.47292 * 330.00308 * 25 23 21 29 29 C 1.47431 * 125.65078 * 180.02562 * 10 8 6 30 30 O 1.44428 * 110.46595 * 122.31356 * 2 1 3 31 31 H 1.09003 * 109.46683 * 180.70325 * 1 2 3 32 32 H 1.09002 * 109.47180 * 300.69767 * 1 2 3 33 33 H 1.08996 * 109.47407 * 60.70027 * 1 2 3 34 34 H 1.09007 * 110.50806 * 335.72406 * 4 2 1 35 35 H 1.08998 * 110.51350 * 98.28882 * 4 2 1 36 36 H 1.08994 * 110.51469 * 118.64075 * 5 4 2 37 37 H 1.09002 * 110.51162 * 241.21807 * 5 4 2 38 38 H 1.09002 * 109.88308 * 298.40213 * 11 10 8 39 39 H 1.09003 * 109.87786 * 59.56191 * 11 10 8 40 40 H 1.09002 * 110.84635 * 219.67275 * 12 11 10 41 41 H 1.09004 * 110.51801 * 96.45688 * 12 11 10 42 42 H 1.08995 * 109.47558 * 60.00310 * 16 15 13 43 43 H 1.09001 * 109.46488 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47119 * 299.99569 * 16 15 13 45 45 H 1.09007 * 109.47365 * 309.99663 * 17 15 13 46 46 H 1.09004 * 109.47508 * 69.99630 * 17 15 13 47 47 H 0.96999 * 119.99888 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00297 * 180.02562 * 24 23 21 49 49 H 1.09003 * 110.36125 * 322.92596 * 29 10 8 50 50 H 1.09000 * 110.36697 * 85.25095 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0679 -0.7727 -1.2248 5 6 3.3194 -1.5027 -0.6882 6 6 3.3902 -1.0841 0.7971 7 1 4.0542 -0.2284 0.9190 8 6 3.8585 -2.2382 1.6456 9 8 3.1148 -2.7252 2.4706 10 7 5.1037 -2.7289 1.4877 11 6 6.1018 -2.2399 0.5253 12 6 7.3807 -3.0803 0.7250 13 6 7.2192 -3.6253 2.1687 14 1 7.5443 -2.8884 2.9032 15 7 7.9459 -4.8906 2.3390 16 6 7.5735 -5.5457 3.6000 17 6 9.3975 -4.6780 2.2648 18 6 10.0975 -6.0108 2.1966 19 8 9.4507 -7.0369 2.2082 20 7 11.4421 -6.0628 2.1217 21 6 12.0789 -7.2753 2.0592 22 1 11.5030 -8.1888 2.0703 23 6 13.4652 -7.3288 1.9814 24 7 14.1660 -6.2172 1.9684 25 14 14.3328 -8.9809 1.8969 26 1 14.4856 -9.3876 0.4769 27 1 15.6731 -8.8691 2.5266 28 1 13.5297 -9.9994 2.6199 29 6 5.6882 -3.8496 2.2466 30 8 2.0350 -0.7233 1.1436 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3634 0.5246 0.8837 33 1 -0.3634 0.5029 -0.8961 34 1 1.3283 -1.4917 -1.5776 35 1 2.3388 -0.0821 -2.0233 36 1 3.1988 -2.5824 -0.7757 37 1 4.2112 -1.1745 -1.2222 38 1 5.7288 -2.3646 -0.4912 39 1 6.3175 -1.1887 0.7169 40 1 8.2711 -2.4565 0.6457 41 1 7.4165 -3.8985 0.0056 42 1 6.5038 -5.7545 3.5990 43 1 8.1256 -6.4801 3.7008 44 1 7.8147 -4.8889 4.4357 45 1 9.6346 -4.0971 1.3734 46 1 9.7313 -4.1372 3.1504 47 1 11.9594 -5.2422 2.1121 48 1 15.1337 -6.2546 1.9137 49 1 5.3530 -3.8214 3.2834 50 1 5.4200 -4.8004 1.7860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192446361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -124.810138 kcal Electronic energy + Delta-G solvation = -29803.441352 eV Core-core repulsion = 25636.952487 eV Total energy + Delta-G solvation = -4166.488865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66423 -40.56835 -39.87927 -38.75311 -36.78352 -35.77212 -33.33192 -33.25684 -33.04638 -31.71237 -30.41679 -28.87595 -27.75287 -26.85871 -25.28563 -24.07411 -23.09106 -22.02092 -21.46909 -20.90598 -20.43751 -19.81490 -18.48428 -17.94596 -17.61681 -17.43679 -17.00782 -16.59710 -16.39839 -16.16161 -15.97427 -15.45905 -15.22439 -15.14247 -14.93066 -14.76063 -14.67488 -14.17690 -13.94790 -13.83326 -13.65928 -13.44136 -13.40057 -13.20879 -13.07554 -12.93883 -12.76122 -12.61987 -12.50823 -12.39930 -12.22561 -12.12444 -11.93576 -11.83334 -11.80629 -11.63181 -11.43257 -11.07556 -10.69338 -10.26498 -9.96987 -9.77447 -9.26464 -8.44286 -5.92187 1.39134 1.42598 1.43256 1.54820 1.58674 2.09018 2.30076 2.71810 2.93023 3.20842 3.23235 3.42537 3.53897 3.61952 3.64903 3.87981 3.95176 4.04094 4.14657 4.15917 4.23481 4.31374 4.33362 4.38815 4.45011 4.53820 4.54650 4.56968 4.57740 4.68370 4.73804 4.78396 4.84098 4.92885 4.94065 5.00900 5.02079 5.10257 5.17067 5.18436 5.26087 5.26741 5.43897 5.82075 5.85058 6.04607 6.17901 6.38196 6.64078 6.99970 7.16432 7.60280 8.16686 8.72956 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.001828 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.252824 B =15312.266694 C =15667.370528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 H 0.092 0.908 4 C -0.144 4.144 5 C -0.141 4.141 6 C 0.066 3.934 7 H 0.124 0.876 8 C 0.526 3.474 9 O -0.581 6.581 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.122 4.122 13 C 0.072 3.928 14 H 0.069 0.931 15 N -0.523 5.523 16 C 0.024 3.976 17 C 0.060 3.940 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.275 1.275 29 C 0.119 3.881 30 O -0.384 6.384 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.062 0.938 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.113 19.730 -8.714 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 H 0.109 0.891 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.005 3.995 7 H 0.141 0.859 8 C 0.315 3.685 9 O -0.460 6.460 10 N -0.346 5.346 11 C -0.025 4.025 12 C -0.160 4.160 13 C -0.036 4.036 14 H 0.087 0.913 15 N -0.248 5.248 16 C -0.123 4.123 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.004 4.004 30 O -0.304 6.304 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.137 0.863 46 H 0.086 0.914 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.069 18.508 -8.461 27.889 hybrid contribution 1.062 -0.410 0.999 1.515 sum -18.007 18.098 -7.462 26.598 Atomic orbital electron populations 1.21839 0.92685 1.02445 1.03447 1.23373 0.96085 0.96184 0.84349 0.89067 1.23035 0.96723 1.00078 0.98350 1.22984 1.01464 1.01453 0.91993 1.22911 0.86838 0.95332 0.94424 0.85888 1.20602 0.80048 0.84442 0.83380 1.90707 1.54994 1.62186 1.38117 1.48385 1.12825 1.34320 1.39045 1.22482 0.86884 0.99767 0.93352 1.22778 0.98262 1.00145 0.94803 1.22804 0.91717 0.90055 0.99068 0.91275 1.61550 1.04621 1.22359 1.36237 1.22427 1.01564 0.99476 0.88883 1.21732 0.87692 0.93821 1.03813 1.20776 0.82319 0.91880 0.82133 1.90479 1.65777 1.37714 1.56185 1.41908 1.05364 1.08752 1.65114 1.19630 0.90288 0.86630 1.49543 0.90462 1.25966 0.96544 1.02151 0.96449 1.69658 1.07853 1.28129 1.50375 0.84973 0.77443 0.77563 0.78635 1.19661 1.19648 1.20032 1.22067 0.92290 0.89728 0.96346 1.89273 1.26003 1.75138 1.39968 0.93188 0.92455 0.88396 0.90740 0.87036 0.91855 0.85941 0.88525 0.88018 0.87238 0.90117 0.91092 0.92153 0.95122 0.86326 0.91441 0.76952 0.91367 0.91938 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.52 71.98 0.69 -1.04 16 2 C 0.06 0.73 3.92 31.10 0.12 0.85 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.14 -1.27 6.63 31.61 0.21 -1.06 16 5 C -0.14 -1.52 5.39 31.61 0.17 -1.35 16 6 C 0.07 1.12 3.14 30.35 0.10 1.22 16 7 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 8 C 0.53 13.34 7.14 87.66 0.63 13.96 16 9 O -0.58 -21.23 16.81 15.35 0.26 -20.98 16 10 N -0.61 -12.67 3.33 -811.73 -2.70 -15.37 16 11 C 0.10 1.15 6.11 86.73 0.53 1.67 16 12 C -0.12 -1.91 5.61 31.78 0.18 -1.73 16 13 C 0.07 1.60 2.71 46.31 0.13 1.73 16 14 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 15 N -0.52 -15.93 4.40 -893.41 -3.93 -19.86 16 16 C 0.02 0.79 8.93 127.69 1.14 1.93 16 17 C 0.06 1.93 5.36 85.56 0.46 2.39 16 18 C 0.44 20.25 7.47 87.66 0.66 20.90 16 19 O -0.62 -33.26 13.91 -3.08 -0.04 -33.30 16 20 N -0.57 -28.53 5.29 -306.99 -1.62 -30.15 16 21 C -0.33 -18.49 9.68 84.04 0.81 -17.67 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 25 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 29 C 0.12 2.95 5.07 86.86 0.44 3.39 16 30 O -0.38 -8.71 10.61 -130.59 -1.39 -10.10 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.75 7.87 -2.38 -0.02 0.73 16 35 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.93 7.86 -2.39 -0.02 0.91 16 37 H 0.12 0.47 7.25 -2.39 -0.02 0.45 16 38 H 0.10 0.77 6.49 -2.39 -0.02 0.76 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 1.23 7.91 -2.39 -0.02 1.21 16 41 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.07 2.12 6.96 -2.39 -0.02 2.11 16 43 H 0.06 2.44 5.83 -2.39 -0.01 2.43 16 44 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 3.12 7.01 -2.38 -0.02 3.10 16 46 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16 47 H 0.40 18.56 7.90 -92.71 -0.73 17.82 16 48 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 49 H 0.06 1.72 7.93 -2.39 -0.02 1.71 16 50 H 0.06 1.83 8.11 -2.39 -0.02 1.82 16 Total: -1.00 -79.13 396.57 -0.19 -79.32 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.21 Total: 29.12 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 6.72 Total: 25.06 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -7.97 Total: -113.62 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -1.17 Total: -64.38 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.13 -0.19 -79.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192446361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.493 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds