Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.33252 * 2 1 4 4 C 1.54489 * 110.36989 * 237.63802 * 2 1 3 5 5 C 1.54503 * 104.06072 * 217.18813 * 4 2 1 6 6 H 1.08997 * 110.62996 * 118.70170 * 5 4 2 7 7 C 1.50699 * 110.51403 * 241.35494 * 5 4 2 8 8 O 1.21286 * 119.99827 * 356.09976 * 7 5 4 9 9 N 1.34777 * 120.00626 * 176.09454 * 7 5 4 10 10 C 1.47616 * 118.74497 * 0.02562 * 9 7 5 11 11 C 1.53797 * 111.30419 * 138.31562 * 10 9 7 12 12 C 1.51212 * 109.63150 * 319.93341 * 11 10 9 13 13 N 1.46201 * 109.09882 * 92.42286 * 12 11 10 14 14 C 1.46891 * 111.00042 * 144.76427 * 13 12 11 15 15 C 1.50706 * 109.47257 * 197.08416 * 14 13 12 16 16 O 1.21295 * 119.99318 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00422 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00252 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99864 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00299 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47054 * 90.00012 * 22 20 18 24 24 H 1.48504 * 109.46952 * 210.00075 * 22 20 18 25 25 H 1.48495 * 109.47160 * 329.99821 * 22 20 18 26 26 C 1.41443 * 116.34482 * 272.97162 * 13 12 11 27 27 C 1.44878 * 118.74928 * 179.97438 * 9 7 5 28 28 C 1.54485 * 104.06414 * 359.97438 * 5 4 2 29 29 O 1.44419 * 104.80346 * 23.97995 * 28 5 4 30 30 H 1.09002 * 109.47107 * 299.19504 * 1 2 3 31 31 H 1.09001 * 109.47222 * 59.19767 * 1 2 3 32 32 H 1.09005 * 109.46995 * 179.19729 * 1 2 3 33 33 H 1.09000 * 110.50783 * 98.54469 * 4 2 1 34 34 H 1.08995 * 110.51312 * 335.83253 * 4 2 1 35 35 H 1.08998 * 109.11240 * 258.78673 * 10 9 7 36 36 H 1.09008 * 109.11134 * 17.84523 * 10 9 7 37 37 H 1.08992 * 109.44603 * 80.00806 * 11 10 9 38 38 H 1.08998 * 109.44410 * 199.91106 * 11 10 9 39 39 H 1.09000 * 109.53968 * 332.53803 * 12 11 10 40 40 H 1.09000 * 109.59805 * 212.34352 * 12 11 10 41 41 H 1.08995 * 109.47669 * 317.08476 * 14 13 12 42 42 H 1.09000 * 109.47520 * 77.09060 * 14 13 12 43 43 H 0.97002 * 120.00038 * 0.02562 * 17 15 14 44 44 H 0.97001 * 119.99977 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.38572 * 303.31982 * 26 13 12 46 46 H 1.09001 * 109.30026 * 183.57903 * 26 13 12 47 47 H 1.08997 * 109.43994 * 29.79595 * 27 9 7 48 48 H 1.09008 * 109.43436 * 149.66568 * 27 9 7 49 49 H 1.09005 * 110.37200 * 142.80900 * 28 5 4 50 50 H 1.09004 * 110.37260 * 265.03629 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7752 -1.2233 5 6 3.3177 -1.5063 -0.6846 6 1 3.1979 -2.5862 -0.7709 7 6 4.5525 -1.0530 -1.4200 8 8 4.4559 -0.2751 -2.3455 9 7 5.7643 -1.5118 -1.0492 10 6 5.8500 -2.4580 0.0806 11 6 6.8541 -3.5860 -0.2101 12 6 6.7239 -4.0231 -1.6519 13 7 7.6698 -3.2646 -2.4689 14 6 8.2067 -4.0921 -3.5574 15 6 9.4536 -3.4497 -4.1086 16 8 9.8550 -2.4050 -3.6409 17 7 10.1220 -4.0353 -5.1218 18 6 11.2565 -3.4512 -5.6229 19 1 11.6145 -2.5214 -5.2060 20 6 11.9454 -4.0548 -6.6679 21 7 11.5095 -5.1858 -7.1755 22 14 13.4908 -3.2585 -7.3510 23 1 14.6755 -3.7603 -6.6094 24 1 13.6276 -3.5977 -8.7903 25 1 13.3979 -1.7845 -7.1966 26 6 7.2176 -2.0163 -2.9567 27 6 6.9332 -1.0586 -1.7754 28 6 3.3877 -1.0858 0.8002 29 8 2.0333 -0.7217 1.1449 30 1 -0.3633 0.5013 0.8971 31 1 -0.3634 0.5262 -0.8827 32 1 -0.3633 -1.0276 -0.0144 33 1 2.3429 -0.0858 -2.0215 34 1 1.3276 -1.4934 -1.5759 35 1 6.1667 -1.9196 0.9738 36 1 4.8661 -2.8927 0.2574 37 1 7.8668 -3.2257 -0.0299 38 1 6.6487 -4.4325 0.4452 39 1 5.7084 -3.8339 -1.9998 40 1 6.9445 -5.0875 -1.7326 41 1 8.4477 -5.0839 -3.1750 42 1 7.4625 -4.1788 -4.3490 43 1 9.8003 -4.8702 -5.4966 44 1 11.9902 -5.6070 -7.9053 45 1 6.3035 -2.1624 -3.5322 46 1 7.9837 -1.5815 -3.5987 47 1 6.7551 -0.0538 -2.1585 48 1 7.7931 -1.0436 -1.1056 49 1 3.7246 -1.9203 1.4154 50 1 4.0546 -0.2322 0.9219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196340502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -97.622897 kcal Electronic energy + Delta-G solvation = -30730.280841 eV Core-core repulsion = 26564.970903 eV Total energy + Delta-G solvation = -4165.309938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08180 -39.48767 -38.52655 -37.34144 -35.23947 -33.84888 -32.93539 -32.47613 -32.07831 -31.25118 -29.17088 -26.91342 -26.55878 -25.51455 -24.31893 -23.57246 -21.98191 -21.21107 -20.64392 -19.35136 -18.89825 -17.99254 -17.72148 -16.59942 -16.47088 -16.04608 -15.87619 -15.68580 -15.31167 -15.07398 -14.77032 -14.59196 -14.31749 -14.02419 -13.76626 -13.61772 -13.45993 -13.14825 -12.94744 -12.72233 -12.59048 -12.32674 -12.30492 -11.87673 -11.75615 -11.53182 -11.49655 -11.43746 -11.28764 -11.16445 -11.13840 -10.93925 -10.89781 -10.83702 -10.39648 -10.21948 -10.15677 -9.85286 -9.47329 -8.76376 -8.42486 -7.97097 -7.73482 -6.42017 -3.82730 2.42340 2.82553 3.17559 3.26305 3.32104 3.49441 3.89992 3.95945 4.04436 4.22771 4.27870 4.33742 4.56314 4.62310 4.73765 4.82853 4.85438 4.99721 5.01233 5.06965 5.17218 5.22868 5.26328 5.27738 5.36179 5.43985 5.48344 5.50402 5.53868 5.63636 5.66796 5.70830 5.72416 5.79201 5.80115 5.85611 5.93184 6.13834 6.16399 6.28909 6.33728 6.43712 6.61542 7.20320 7.34913 7.54919 7.73068 8.02187 8.06354 8.61283 9.17802 9.54247 10.05687 10.75668 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.002160 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.610518 B =12958.052619 C =13282.702739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.142 4.142 5 C -0.146 4.146 6 H 0.109 0.891 7 C 0.514 3.486 8 O -0.534 6.534 9 N -0.602 5.602 10 C 0.102 3.898 11 C -0.133 4.133 12 C 0.073 3.927 13 N -0.541 5.541 14 C 0.054 3.946 15 C 0.442 3.558 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.062 3.938 27 C 0.120 3.880 28 C 0.058 3.942 29 O -0.370 6.370 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.014 0.986 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.192 2.649 15.822 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.088 0.912 4 C -0.180 4.180 5 C -0.167 4.167 6 H 0.127 0.873 7 C 0.301 3.699 8 O -0.411 6.411 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.171 4.171 12 C -0.055 4.055 13 N -0.265 5.265 14 C -0.077 4.077 15 C 0.227 3.773 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.068 4.068 27 C -0.002 4.002 28 C -0.019 4.019 29 O -0.289 6.289 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.130 0.870 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.119 0.881 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.644 3.729 15.973 24.832 hybrid contribution 0.193 -0.608 -1.334 1.478 sum -18.450 3.121 14.639 23.758 Atomic orbital electron populations 1.21803 0.92952 1.02955 1.02592 1.23051 0.95480 0.95668 0.84638 0.91154 1.23027 0.95259 1.00320 0.99348 1.22696 0.94431 1.02885 0.96737 0.87327 1.20376 0.84629 0.81027 0.83880 1.90688 1.85885 1.35109 1.29429 1.47934 1.06804 1.45075 1.33641 1.22194 1.00645 0.90827 0.88323 1.21892 1.00893 0.97418 0.96933 1.21503 0.93795 0.97189 0.93013 1.57780 1.39445 1.04263 1.25008 1.21824 0.96179 0.96745 0.92911 1.19807 0.86675 0.87437 0.83343 1.90478 1.69583 1.24410 1.61736 1.41881 1.24295 1.23543 1.30344 1.19691 1.01230 1.07421 1.14403 0.87903 1.25265 0.99698 0.96084 0.96962 1.69614 1.40703 1.17425 1.26592 0.85857 0.81132 0.79506 0.77792 1.20420 1.20966 1.19425 1.21779 0.99157 0.89561 0.96261 1.21623 0.86593 0.97938 0.94074 1.23481 0.85345 1.00483 0.92626 1.89136 1.26567 1.74675 1.38497 0.91809 0.90954 0.91733 0.88022 0.90084 0.91388 0.90266 0.89436 0.90259 0.94795 0.91003 0.89467 0.93646 0.77525 0.91894 0.96756 0.87049 0.89606 0.89431 0.88119 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.53 37.16 0.35 -0.63 16 2 C 0.07 0.60 3.92 -25.95 -0.10 0.50 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.14 -1.30 6.21 -25.16 -0.16 -1.45 16 5 C -0.15 -1.33 2.56 -90.20 -0.23 -1.56 16 6 H 0.11 0.84 7.50 -51.93 -0.39 0.45 16 7 C 0.51 6.37 6.92 -10.99 -0.08 6.29 16 8 O -0.53 -8.64 14.72 5.55 0.08 -8.56 16 9 N -0.60 -6.97 2.19 -172.48 -0.38 -7.35 16 10 C 0.10 0.84 4.88 -3.02 -0.01 0.83 16 11 C -0.13 -1.23 5.78 -27.22 -0.16 -1.39 16 12 C 0.07 0.86 5.32 -5.10 -0.03 0.83 16 13 N -0.54 -8.58 3.60 -241.02 -0.87 -9.45 16 14 C 0.05 0.95 5.44 -4.98 -0.03 0.92 16 15 C 0.44 10.22 7.37 -10.99 -0.08 10.14 16 16 O -0.58 -15.10 13.96 5.54 0.08 -15.02 16 17 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 22 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.06 1.04 5.02 -5.77 -0.03 1.01 16 27 C 0.12 1.72 5.51 -4.01 -0.02 1.70 16 28 C 0.06 0.47 5.87 37.94 0.22 0.69 16 29 O -0.37 -3.63 11.34 -35.23 -0.40 -4.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.10 1.12 6.51 -51.93 -0.34 0.78 16 34 H 0.08 0.64 7.86 -51.93 -0.41 0.24 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.49 4.77 -51.92 -0.25 0.25 16 37 H 0.09 0.98 7.98 -51.93 -0.41 0.57 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.41 7.32 -51.93 -0.38 0.03 16 40 H 0.07 0.78 7.36 -51.93 -0.38 0.39 16 41 H 0.09 1.36 7.57 -51.93 -0.39 0.96 16 42 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 46 H 0.11 2.27 5.61 -51.93 -0.29 1.98 16 47 H 0.09 1.30 7.28 -51.93 -0.38 0.93 16 48 H 0.09 1.24 8.11 -51.92 -0.42 0.82 16 49 H 0.10 0.60 6.79 -51.93 -0.35 0.24 16 50 H 0.06 0.55 7.86 -51.93 -0.41 0.14 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -32.72 385.46 -8.64 -41.35 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.01 Total: 9.22 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.59 Total: 9.98 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.58 Total: -54.77 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.24 Total: -27.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.72 -8.64 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.269 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds