Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.33252 * 2 1 4 4 C 1.54489 * 110.36989 * 237.63802 * 2 1 3 5 5 C 1.54503 * 104.06072 * 217.18813 * 4 2 1 6 6 H 1.08997 * 110.62996 * 118.70170 * 5 4 2 7 7 C 1.50699 * 110.51403 * 241.35494 * 5 4 2 8 8 O 1.21286 * 119.99827 * 356.09976 * 7 5 4 9 9 N 1.34777 * 120.00626 * 176.09454 * 7 5 4 10 10 C 1.47616 * 118.74497 * 0.02562 * 9 7 5 11 11 C 1.53797 * 111.30419 * 138.31562 * 10 9 7 12 12 C 1.51212 * 109.63150 * 319.93341 * 11 10 9 13 13 N 1.46201 * 109.09882 * 92.42286 * 12 11 10 14 14 C 1.46891 * 111.00042 * 144.76427 * 13 12 11 15 15 C 1.50706 * 109.47257 * 197.08416 * 14 13 12 16 16 O 1.21295 * 119.99318 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00422 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00252 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99864 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00299 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47054 * 90.00012 * 22 20 18 24 24 H 1.48504 * 109.46952 * 210.00075 * 22 20 18 25 25 H 1.48495 * 109.47160 * 329.99821 * 22 20 18 26 26 C 1.41443 * 116.34482 * 272.97162 * 13 12 11 27 27 C 1.44878 * 118.74928 * 179.97438 * 9 7 5 28 28 C 1.54485 * 104.06414 * 359.97438 * 5 4 2 29 29 O 1.44419 * 104.80346 * 23.97995 * 28 5 4 30 30 H 1.09002 * 109.47107 * 299.19504 * 1 2 3 31 31 H 1.09001 * 109.47222 * 59.19767 * 1 2 3 32 32 H 1.09005 * 109.46995 * 179.19729 * 1 2 3 33 33 H 1.09000 * 110.50783 * 98.54469 * 4 2 1 34 34 H 1.08995 * 110.51312 * 335.83253 * 4 2 1 35 35 H 1.08998 * 109.11240 * 258.78673 * 10 9 7 36 36 H 1.09008 * 109.11134 * 17.84523 * 10 9 7 37 37 H 1.08992 * 109.44603 * 80.00806 * 11 10 9 38 38 H 1.08998 * 109.44410 * 199.91106 * 11 10 9 39 39 H 1.09000 * 109.53968 * 332.53803 * 12 11 10 40 40 H 1.09000 * 109.59805 * 212.34352 * 12 11 10 41 41 H 1.08995 * 109.47669 * 317.08476 * 14 13 12 42 42 H 1.09000 * 109.47520 * 77.09060 * 14 13 12 43 43 H 0.97002 * 120.00038 * 0.02562 * 17 15 14 44 44 H 0.97001 * 119.99977 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.38572 * 303.31982 * 26 13 12 46 46 H 1.09001 * 109.30026 * 183.57903 * 26 13 12 47 47 H 1.08997 * 109.43994 * 29.79595 * 27 9 7 48 48 H 1.09008 * 109.43436 * 149.66568 * 27 9 7 49 49 H 1.09005 * 110.37200 * 142.80900 * 28 5 4 50 50 H 1.09004 * 110.37260 * 265.03629 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7752 -1.2233 5 6 3.3177 -1.5063 -0.6846 6 1 3.1979 -2.5862 -0.7709 7 6 4.5525 -1.0530 -1.4200 8 8 4.4559 -0.2751 -2.3455 9 7 5.7643 -1.5118 -1.0492 10 6 5.8500 -2.4580 0.0806 11 6 6.8541 -3.5860 -0.2101 12 6 6.7239 -4.0231 -1.6519 13 7 7.6698 -3.2646 -2.4689 14 6 8.2067 -4.0921 -3.5574 15 6 9.4536 -3.4497 -4.1086 16 8 9.8550 -2.4050 -3.6409 17 7 10.1220 -4.0353 -5.1218 18 6 11.2565 -3.4512 -5.6229 19 1 11.6145 -2.5214 -5.2060 20 6 11.9454 -4.0548 -6.6679 21 7 11.5095 -5.1858 -7.1755 22 14 13.4908 -3.2585 -7.3510 23 1 14.6755 -3.7603 -6.6094 24 1 13.6276 -3.5977 -8.7903 25 1 13.3979 -1.7845 -7.1966 26 6 7.2176 -2.0163 -2.9567 27 6 6.9332 -1.0586 -1.7754 28 6 3.3877 -1.0858 0.8002 29 8 2.0333 -0.7217 1.1449 30 1 -0.3633 0.5013 0.8971 31 1 -0.3634 0.5262 -0.8827 32 1 -0.3633 -1.0276 -0.0144 33 1 2.3429 -0.0858 -2.0215 34 1 1.3276 -1.4934 -1.5759 35 1 6.1667 -1.9196 0.9738 36 1 4.8661 -2.8927 0.2574 37 1 7.8668 -3.2257 -0.0299 38 1 6.6487 -4.4325 0.4452 39 1 5.7084 -3.8339 -1.9998 40 1 6.9445 -5.0875 -1.7326 41 1 8.4477 -5.0839 -3.1750 42 1 7.4625 -4.1788 -4.3490 43 1 9.8003 -4.8702 -5.4966 44 1 11.9902 -5.6070 -7.9053 45 1 6.3035 -2.1624 -3.5322 46 1 7.9837 -1.5815 -3.5987 47 1 6.7551 -0.0538 -2.1585 48 1 7.7931 -1.0436 -1.1056 49 1 3.7246 -1.9203 1.4154 50 1 4.0546 -0.2322 0.9219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196340502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -121.178559 kcal Electronic energy + Delta-G solvation = -30731.302291 eV Core-core repulsion = 26564.970903 eV Total energy + Delta-G solvation = -4166.331388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99348 -40.66842 -39.79132 -38.67214 -36.45860 -35.76651 -33.83817 -33.27758 -33.25289 -32.79493 -30.44613 -28.17034 -27.35759 -26.68936 -25.80831 -24.60910 -22.79881 -22.00901 -21.71015 -21.05998 -19.97089 -19.77611 -18.71328 -17.91103 -17.41135 -17.26055 -16.80596 -16.61163 -16.55834 -16.23294 -16.16201 -15.89579 -15.56287 -15.49583 -15.19340 -14.65591 -14.49623 -14.22204 -13.99256 -13.73393 -13.49282 -13.46268 -13.14152 -13.09596 -13.01324 -12.88932 -12.71643 -12.55056 -12.48005 -12.41892 -12.29462 -12.13739 -11.88697 -11.83081 -11.78561 -11.72436 -11.45696 -10.86077 -10.82793 -10.28803 -10.00269 -9.71557 -9.09581 -8.46550 -5.94875 1.37113 1.40702 1.47661 1.53317 1.91148 2.05818 2.27939 2.74843 2.84530 3.20208 3.29524 3.38948 3.55751 3.69058 3.82589 3.95789 3.98503 4.06628 4.12882 4.16877 4.17475 4.29859 4.33755 4.39664 4.46269 4.49279 4.53888 4.59117 4.62655 4.67726 4.75926 4.82437 4.84735 4.89392 4.91635 4.98274 5.02097 5.06956 5.12234 5.26424 5.32783 5.41010 5.59595 5.78809 5.91839 6.13518 6.27284 6.52875 6.60883 7.06676 7.13286 7.57076 8.12717 8.70783 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.002160 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.610518 B =12958.052619 C =13282.702739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 H 0.061 0.939 4 C -0.142 4.142 5 C -0.138 4.138 6 H 0.134 0.866 7 C 0.510 3.490 8 O -0.582 6.582 9 N -0.599 5.599 10 C 0.096 3.904 11 C -0.127 4.127 12 C 0.069 3.931 13 N -0.550 5.550 14 C 0.065 3.935 15 C 0.439 3.561 16 O -0.612 6.612 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.074 3.926 27 C 0.133 3.867 28 C 0.059 3.941 29 O -0.380 6.380 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.001 0.999 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.133 0.867 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.467 0.842 17.819 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.079 0.921 4 C -0.180 4.180 5 C -0.160 4.160 6 H 0.152 0.848 7 C 0.299 3.701 8 O -0.462 6.462 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.057 4.057 13 N -0.274 5.274 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.498 6.498 17 N -0.213 5.213 18 C -0.459 4.459 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.056 4.056 27 C 0.009 3.991 28 C -0.018 4.018 29 O -0.300 6.300 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.074 0.926 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.019 0.981 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.150 0.850 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.940 1.881 18.012 26.936 hybrid contribution 0.561 -0.022 -1.922 2.002 sum -19.379 1.859 16.090 25.257 Atomic orbital electron populations 1.21804 0.91496 1.03486 1.03206 1.23099 0.96679 0.95085 0.84186 0.92066 1.23013 0.95803 1.00298 0.98913 1.22729 0.92218 1.04084 0.96920 0.84838 1.21012 0.85603 0.80181 0.83354 1.90675 1.86607 1.37254 1.31681 1.47994 1.05614 1.45421 1.33998 1.22534 1.02257 0.90178 0.87444 1.21885 1.00062 0.98954 0.95646 1.21715 0.92761 0.97654 0.93619 1.57825 1.41120 1.04085 1.24411 1.21726 0.93474 0.97446 0.93878 1.20857 0.87605 0.86750 0.82102 1.90458 1.70858 1.25976 1.62498 1.41953 1.24265 1.23870 1.31219 1.19638 1.03024 1.07449 1.15836 0.90333 1.26031 1.02249 0.96511 0.96649 1.69674 1.41695 1.18030 1.26820 0.84938 0.77643 0.78208 0.77612 1.19515 1.19661 1.19925 1.21488 0.96840 0.90670 0.96622 1.21255 0.87910 0.96483 0.93471 1.23607 0.84704 1.01333 0.92112 1.89130 1.27263 1.74720 1.38866 0.91556 0.90028 0.91210 0.90446 0.88627 0.89321 0.87197 0.91473 0.86437 0.94519 0.89231 0.86614 0.92636 0.77113 0.91370 0.98080 0.91490 0.91413 0.89383 0.84974 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.53 71.98 0.69 -1.00 16 2 C 0.07 1.07 3.92 31.10 0.12 1.19 16 3 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.14 -2.44 6.21 31.61 0.20 -2.24 16 5 C -0.14 -2.19 2.56 -10.52 -0.03 -2.22 16 6 H 0.13 1.49 7.50 -2.39 -0.02 1.47 16 7 C 0.51 12.25 6.92 87.66 0.61 12.86 16 8 O -0.58 -19.52 14.72 -3.05 -0.04 -19.57 16 9 N -0.60 -13.12 2.19 -818.00 -1.79 -14.91 16 10 C 0.10 1.23 4.88 86.43 0.42 1.65 16 11 C -0.13 -1.88 5.78 30.28 0.18 -1.70 16 12 C 0.07 1.43 5.32 85.85 0.46 1.89 16 13 N -0.55 -17.12 3.60 -916.45 -3.30 -20.42 16 14 C 0.07 2.25 5.44 85.56 0.47 2.72 16 15 C 0.44 20.91 7.37 87.66 0.65 21.55 16 16 O -0.61 -33.45 13.96 -3.08 -0.04 -33.49 16 17 N -0.58 -29.70 5.29 -306.98 -1.62 -31.32 16 18 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 21 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 22 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.07 2.58 5.02 87.89 0.44 3.02 16 27 C 0.13 3.91 5.51 87.27 0.48 4.39 16 28 C 0.06 0.78 5.87 72.49 0.43 1.21 16 29 O -0.38 -6.51 11.34 -148.98 -1.69 -8.20 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.76 8.12 -2.38 -0.02 0.74 16 33 H 0.08 1.75 6.51 -2.39 -0.02 1.73 16 34 H 0.10 1.33 7.86 -2.39 -0.02 1.31 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.11 0.77 4.77 -2.38 -0.01 0.76 16 37 H 0.07 1.33 7.98 -2.39 -0.02 1.31 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.04 0.77 7.32 -2.39 -0.02 0.75 16 40 H 0.09 1.57 7.36 -2.39 -0.02 1.56 16 41 H 0.12 3.35 7.57 -2.39 -0.02 3.33 16 42 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 43 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 44 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.00 0.05 8.12 -2.39 -0.02 0.03 16 46 H 0.07 2.94 5.61 -2.39 -0.01 2.93 16 47 H 0.07 2.22 7.28 -2.39 -0.02 2.20 16 48 H 0.09 2.56 8.11 -2.38 -0.02 2.54 16 49 H 0.13 0.90 6.79 -2.38 -0.02 0.88 16 50 H 0.06 0.85 7.86 -2.39 -0.02 0.83 16 Total: -1.00 -75.15 385.46 0.42 -74.73 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.22 Total: 32.56 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 6.38 Total: 24.96 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.43 Total: -116.41 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -1.78 Total: -61.26 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -75.15 0.42 -74.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.449 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds