Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.54835 * 2 1 4 4 C 1.54990 * 110.62024 * 236.94619 * 2 1 3 5 5 C 1.54809 * 102.09428 * 204.47780 * 4 2 1 6 6 C 1.54101 * 104.18657 * 20.88047 * 5 4 2 7 7 H 1.08997 * 110.00354 * 242.53576 * 6 5 4 8 8 C 1.50702 * 109.87739 * 121.45549 * 6 5 4 9 9 O 1.21277 * 119.99643 * 245.71210 * 8 6 5 10 10 N 1.34769 * 119.99908 * 65.71530 * 8 6 5 11 11 C 1.47615 * 118.75089 * 359.73296 * 10 8 6 12 12 C 1.54176 * 111.09568 * 138.19685 * 11 10 8 13 13 C 1.51269 * 109.77709 * 320.24310 * 12 11 10 14 14 N 1.46204 * 109.09905 * 92.30647 * 13 12 11 15 15 C 1.46900 * 110.99783 * 144.77307 * 14 13 12 16 16 C 1.50698 * 109.47390 * 64.98879 * 15 14 13 17 17 O 1.21295 * 119.99911 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00266 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00002 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99924 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99706 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99703 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47024 * 60.00010 * 23 21 19 25 25 H 1.48499 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47207 * 300.00182 * 23 21 19 27 27 C 1.41439 * 116.34597 * 272.97211 * 14 13 12 28 28 C 1.44884 * 118.74749 * 179.97438 * 10 8 6 29 29 O 1.43746 * 107.29451 * 2.03219 * 6 5 4 30 30 H 1.08993 * 109.47070 * 298.57974 * 1 2 3 31 31 H 1.08997 * 109.46759 * 58.57503 * 1 2 3 32 32 H 1.09000 * 109.47239 * 178.57437 * 1 2 3 33 33 H 1.09003 * 110.91007 * 322.67866 * 4 2 1 34 34 H 1.09000 * 110.90976 * 86.27867 * 4 2 1 35 35 H 1.09001 * 110.48405 * 262.20595 * 5 4 2 36 36 H 1.08998 * 110.60118 * 139.61117 * 5 4 2 37 37 H 1.08996 * 109.11204 * 258.79101 * 11 10 8 38 38 H 1.09002 * 109.10821 * 17.84325 * 11 10 8 39 39 H 1.09000 * 109.45089 * 200.09822 * 12 11 10 40 40 H 1.09000 * 109.25807 * 80.27041 * 12 11 10 41 41 H 1.09003 * 109.53511 * 332.42399 * 13 12 11 42 42 H 1.08997 * 109.59799 * 212.22938 * 13 12 11 43 43 H 1.09001 * 109.47494 * 184.98886 * 15 14 13 44 44 H 1.09001 * 109.47369 * 304.98932 * 15 14 13 45 45 H 0.97004 * 120.00131 * 359.97438 * 18 16 15 46 46 H 0.97005 * 119.99458 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.39163 * 303.32746 * 27 14 13 48 48 H 1.09000 * 109.38791 * 183.64063 * 27 14 13 49 49 H 1.09007 * 109.43408 * 29.79384 * 28 10 8 50 50 H 1.09005 * 109.43866 * 149.66085 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7912 -1.2158 5 6 3.4795 -1.2178 -0.7215 6 6 3.3839 -1.1242 0.8136 7 1 4.0855 -0.3778 1.1861 8 6 3.6888 -2.4657 1.4288 9 8 2.8233 -3.0695 2.0265 10 7 4.9232 -2.9944 1.3148 11 6 5.9540 -2.2385 0.5764 12 6 7.3129 -2.2989 1.3022 13 6 7.1010 -2.1852 2.7956 14 7 6.9803 -3.5263 3.3652 15 6 7.5855 -3.5868 4.7023 16 6 6.8112 -2.7017 5.6447 17 8 5.8500 -2.0812 5.2420 18 7 7.1873 -2.5989 6.9348 19 6 6.4825 -1.7941 7.7923 20 1 5.6262 -1.2422 7.4338 21 6 6.8700 -1.6885 9.1225 22 7 7.9117 -2.3604 9.5587 23 14 5.9102 -0.5914 10.2906 24 1 4.5021 -1.0576 10.3630 25 1 6.5216 -0.6530 11.6425 26 1 5.9433 0.8081 9.7951 27 6 5.6840 -4.0920 3.3695 28 6 5.1867 -4.2855 1.9171 29 8 2.0384 -0.7336 1.1350 30 1 -0.3633 0.4916 0.9024 31 1 -0.3633 0.5358 -0.8769 32 1 -0.3634 -1.0273 -0.0256 33 1 1.4550 -1.6628 -1.4233 34 1 2.1510 -0.1509 -2.0947 35 1 4.2407 -0.5348 -1.0988 36 1 3.6998 -2.2403 -1.0284 37 1 6.0596 -2.6615 -0.4226 38 1 5.6406 -1.1980 0.4909 39 1 7.9431 -1.4774 0.9614 40 1 7.7995 -3.2476 1.0758 41 1 6.1887 -1.6222 2.9925 42 1 7.9503 -1.6725 3.2473 43 1 7.5611 -4.6140 5.0661 44 1 8.6190 -3.2446 4.6492 45 1 7.9562 -3.0949 7.2569 46 1 8.1824 -2.2864 10.4873 47 1 5.0013 -3.4284 3.9002 48 1 5.7124 -5.0578 3.8739 49 1 4.2707 -4.8764 1.9235 50 1 5.9497 -4.8066 1.3389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197203339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -98.428360 kcal Electronic energy + Delta-G solvation = -31415.801033 eV Core-core repulsion = 27250.456168 eV Total energy + Delta-G solvation = -4165.344865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80860 -39.46515 -38.43435 -36.96709 -35.04173 -33.76643 -32.58552 -32.46622 -31.95195 -31.26986 -29.26814 -27.13025 -26.42057 -25.42343 -23.98770 -22.98148 -21.61396 -21.45678 -20.57173 -19.23993 -19.00319 -17.88069 -17.42823 -16.67249 -16.58725 -15.99796 -15.81312 -15.28026 -14.94629 -14.78702 -14.67996 -14.35057 -14.16756 -13.83428 -13.73386 -13.64413 -13.27663 -13.18956 -12.80219 -12.64615 -12.51076 -12.02834 -11.97329 -11.78589 -11.66058 -11.53245 -11.44622 -11.28708 -11.15460 -11.11213 -11.03648 -10.96920 -10.72027 -10.50746 -10.43329 -10.22012 -10.13213 -9.48686 -9.31903 -9.02711 -8.53743 -7.97219 -7.41750 -6.42269 -3.83304 2.66413 2.91457 3.19649 3.25459 3.30714 3.69779 3.87996 4.16727 4.18398 4.28881 4.34625 4.52404 4.60043 4.79249 4.90056 4.95578 5.02450 5.05548 5.13760 5.18514 5.23531 5.25122 5.39210 5.42700 5.45905 5.48731 5.58646 5.64417 5.65774 5.68797 5.76674 5.81868 5.87073 5.95021 5.99202 6.03396 6.12213 6.13088 6.28116 6.53181 6.54299 6.72352 6.87727 7.37864 7.41956 7.54357 7.78334 8.04683 8.31697 8.59752 9.16851 9.53025 10.04231 10.74433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003092 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.529048 B = 9054.419131 C =10555.834264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.145 4.145 6 C 0.062 3.938 7 H 0.094 0.906 8 C 0.512 3.488 9 O -0.516 6.516 10 N -0.602 5.602 11 C 0.107 3.893 12 C -0.131 4.131 13 C 0.072 3.928 14 N -0.535 5.535 15 C 0.049 3.951 16 C 0.405 3.595 17 O -0.591 6.591 18 N -0.559 5.559 19 C -0.301 4.301 20 H 0.101 0.899 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.044 3.956 28 C 0.123 3.877 29 O -0.342 6.342 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 1.003 -23.703 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.090 0.910 4 C -0.186 4.186 5 C -0.183 4.183 6 C 0.000 4.000 7 H 0.111 0.889 8 C 0.298 3.702 9 O -0.391 6.391 10 N -0.337 5.337 11 C -0.015 4.015 12 C -0.170 4.170 13 C -0.055 4.055 14 N -0.258 5.258 15 C -0.082 4.082 16 C 0.190 3.810 17 O -0.477 6.477 18 N -0.195 5.195 19 C -0.431 4.431 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.086 4.086 28 C 0.000 4.000 29 O -0.260 6.260 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.541 0.748 -23.547 23.824 hybrid contribution -0.060 0.823 1.370 1.599 sum -3.601 1.571 -22.178 22.523 Atomic orbital electron populations 1.21761 0.92910 1.03151 1.02485 1.23215 0.95635 0.95294 0.84882 0.90985 1.23197 0.95845 1.01006 0.98595 1.22979 0.98623 1.03464 0.93258 1.22620 0.87201 0.95127 0.95018 0.88884 1.20412 0.82424 0.87064 0.80290 1.90712 1.46078 1.61512 1.40755 1.47712 1.10076 1.20783 1.55152 1.22180 0.88858 0.95972 0.94522 1.21983 0.95509 1.03204 0.96313 1.21416 1.02047 0.89366 0.92706 1.58902 1.22558 1.23679 1.20630 1.22061 0.98362 1.00141 0.87669 1.21120 0.88280 0.87588 0.84013 1.90507 1.30409 1.50217 1.76612 1.42012 1.28549 1.41198 1.07711 1.19662 1.11364 1.22209 0.89830 0.88131 1.25263 0.96733 0.98053 0.97749 1.69604 1.25496 1.41792 1.17271 0.85938 0.79549 0.80171 0.78712 1.19861 1.20909 1.19914 1.21790 0.90662 1.00086 0.96078 1.21545 1.00984 0.83720 0.93735 1.89071 1.25942 1.73065 1.37965 0.91583 0.91139 0.91636 0.90196 0.89875 0.89576 0.89958 0.91727 0.90576 0.90583 0.90251 0.92283 0.91659 0.89529 0.89466 0.77448 0.91784 0.91407 0.90900 0.89846 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.66 37.16 0.36 -0.96 16 2 C 0.07 0.69 3.98 -25.68 -0.10 0.59 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.20 6.59 -24.73 -0.16 -1.36 16 5 C -0.15 -1.24 5.12 -25.20 -0.13 -1.37 16 6 C 0.06 0.81 2.94 -27.31 -0.08 0.73 16 7 H 0.09 1.14 7.18 -51.93 -0.37 0.77 16 8 C 0.51 8.33 6.82 -10.99 -0.07 8.26 16 9 O -0.52 -10.82 15.96 -14.01 -0.22 -11.05 16 10 N -0.60 -8.21 2.18 -172.24 -0.37 -8.58 16 11 C 0.11 1.05 5.09 -2.82 -0.01 1.04 16 12 C -0.13 -1.39 5.79 -26.99 -0.16 -1.55 16 13 C 0.07 1.12 4.21 -5.07 -0.02 1.10 16 14 N -0.53 -8.62 3.99 -240.97 -0.96 -9.58 16 15 C 0.05 0.86 5.58 -4.98 -0.03 0.83 16 16 C 0.40 9.49 7.24 -10.99 -0.08 9.41 16 17 O -0.59 -15.88 12.15 5.54 0.07 -15.81 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 23 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.04 0.75 4.92 -5.77 -0.03 0.72 16 28 C 0.12 1.74 5.51 -4.00 -0.02 1.72 16 29 O -0.34 -5.25 10.44 -54.80 -0.57 -5.82 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.08 0.70 7.50 -51.93 -0.39 0.31 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.66 5.14 -51.93 -0.27 0.40 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 41 H 0.06 1.12 6.32 -51.93 -0.33 0.80 16 42 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 43 H 0.09 1.40 7.92 -51.93 -0.41 0.99 16 44 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 45 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.07 1.53 6.00 -51.93 -0.31 1.22 16 48 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 49 H 0.08 1.25 7.28 -51.93 -0.38 0.87 16 50 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -35.49 385.65 -9.52 -45.01 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.13 Total: 10.83 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -0.78 Total: 11.04 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.67 Total: -56.54 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.73 Total: -32.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.49 -9.52 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197203339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.423 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds