Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.42237 * 2 1 4 4 O 1.44424 * 110.37688 * 122.30941 * 2 1 3 5 5 C 1.44423 * 105.27568 * 159.34504 * 4 2 1 6 6 C 1.54480 * 104.80577 * 319.48730 * 5 4 2 7 7 C 1.54486 * 110.37451 * 237.69351 * 2 1 3 8 8 H 1.08999 * 110.63119 * 98.48356 * 7 2 1 9 9 C 1.50702 * 110.50506 * 335.83191 * 7 2 1 10 10 O 1.21277 * 120.00036 * 275.45906 * 9 7 2 11 11 N 1.34779 * 119.99722 * 95.46480 * 9 7 2 12 12 C 1.47609 * 118.74855 * 354.72936 * 11 9 7 13 13 C 1.53796 * 111.25608 * 138.35430 * 12 11 9 14 14 C 1.51171 * 109.65179 * 319.84309 * 13 12 11 15 15 N 1.46198 * 109.04370 * 92.49990 * 14 13 12 16 16 C 1.46902 * 111.00240 * 144.77010 * 15 14 13 17 17 C 1.50699 * 109.47111 * 197.07991 * 16 15 14 18 18 O 1.21286 * 120.00134 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99841 * 180.02562 * 17 16 15 20 20 C 1.37103 * 120.00000 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99819 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99886 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00029 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99780 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47345 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47472 * 119.99996 * 24 22 20 27 27 H 1.48509 * 109.46780 * 240.00051 * 24 22 20 28 28 C 1.41441 * 116.34482 * 272.97667 * 15 14 13 29 29 C 1.44887 * 118.74388 * 174.71114 * 11 9 7 30 30 H 1.08994 * 109.46766 * 183.39846 * 1 2 3 31 31 H 1.08997 * 109.46591 * 303.39686 * 1 2 3 32 32 H 1.09001 * 109.46944 * 63.39821 * 1 2 3 33 33 H 1.09005 * 110.37093 * 200.66353 * 5 4 2 34 34 H 1.08993 * 110.37447 * 78.32208 * 5 4 2 35 35 H 1.08997 * 110.51328 * 265.33902 * 6 5 4 36 36 H 1.08994 * 110.63013 * 142.68225 * 6 5 4 37 37 H 1.09002 * 109.11040 * 258.79121 * 12 11 9 38 38 H 1.08991 * 109.11409 * 17.90833 * 12 11 9 39 39 H 1.09002 * 109.45144 * 79.97021 * 13 12 11 40 40 H 1.08999 * 109.44462 * 199.88071 * 13 12 11 41 41 H 1.08996 * 109.56036 * 332.63168 * 14 13 12 42 42 H 1.09007 * 109.62487 * 212.40662 * 14 13 12 43 43 H 1.08997 * 109.47033 * 317.08458 * 16 15 14 44 44 H 1.08995 * 109.46862 * 77.08341 * 16 15 14 45 45 H 0.97003 * 120.00162 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00193 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.38575 * 303.32342 * 28 15 14 48 48 H 1.09002 * 109.30330 * 183.58220 * 28 15 14 49 49 H 1.09002 * 109.43821 * 29.78957 * 29 11 9 50 50 H 1.08999 * 109.43337 * 149.65682 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0329 -0.7236 1.1443 5 6 3.3874 -1.0870 0.7994 6 6 3.3179 -1.5056 -0.6860 7 6 2.0678 -0.7740 -1.2240 8 1 2.3426 -0.0857 -2.0233 9 6 1.0444 -1.7665 -1.7124 10 8 0.9713 -2.8637 -1.2007 11 7 0.2104 -1.4349 -2.7179 12 6 0.2428 -0.0552 -3.2414 13 6 0.1489 -0.0390 -4.7764 14 6 0.9818 -1.1634 -5.3486 15 7 0.1346 -2.3415 -5.5269 16 6 0.5271 -3.0958 -6.7248 17 6 -0.5868 -4.0326 -7.1158 18 8 -1.6073 -4.0679 -6.4614 19 7 -0.4488 -4.8310 -8.1928 20 6 -1.4624 -5.6828 -8.5489 21 1 -2.3714 -5.7137 -7.9667 22 6 -1.3199 -6.5064 -9.6590 23 7 -0.2136 -6.4692 -10.3672 24 14 -2.7011 -7.6665 -10.1446 25 1 -3.8302 -7.5182 -9.1916 26 1 -3.1644 -7.3378 -11.5167 27 1 -2.2065 -9.0664 -10.1112 28 6 0.0063 -3.1974 -4.4082 29 6 -0.6836 -2.4465 -3.2439 30 1 -0.3632 -1.0258 0.0609 31 1 -0.3632 0.5657 0.8580 32 1 -0.3633 0.4602 -0.9189 33 1 3.7243 -1.9222 1.4135 34 1 4.0525 -0.2323 0.9220 35 1 3.1956 -2.5852 -0.7733 36 1 4.2106 -1.1790 -1.2192 37 1 -0.5960 0.5037 -2.8266 38 1 1.1745 0.4207 -2.9357 39 1 -0.8908 -0.1666 -5.0779 40 1 0.5210 0.9140 -5.1527 41 1 1.7955 -1.4001 -4.6632 42 1 1.3928 -0.8610 -6.3119 43 1 0.7229 -2.4026 -7.5427 44 1 1.4281 -3.6713 -6.5126 45 1 0.3675 -4.8030 -8.7160 46 1 -0.1143 -7.0438 -11.1423 47 1 0.9951 -3.5277 -4.0902 48 1 -0.5932 -4.0647 -4.6850 49 1 -0.9352 -3.1545 -2.4541 50 1 -1.5946 -1.9715 -3.6079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197554507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -115.808901 kcal Electronic energy + Delta-G solvation = -31227.308364 eV Core-core repulsion = 27061.209822 eV Total energy + Delta-G solvation = -4166.098542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07694 -40.68040 -39.68734 -38.55708 -36.42624 -35.76187 -33.89153 -33.29826 -33.25928 -32.48580 -30.53069 -28.29505 -27.34364 -26.97785 -25.77607 -24.01340 -23.07601 -22.20823 -21.71009 -21.04657 -19.91892 -19.40186 -18.64614 -17.90084 -17.57472 -17.34551 -16.67036 -16.58953 -16.51440 -16.46334 -16.18987 -15.94442 -15.55503 -15.48291 -15.09052 -14.65326 -14.33793 -14.27687 -13.96504 -13.65570 -13.50615 -13.36520 -13.24637 -13.12178 -13.02838 -12.88724 -12.69273 -12.48915 -12.41706 -12.33685 -12.23478 -12.13030 -12.06540 -11.94898 -11.72350 -11.64415 -11.46586 -10.89222 -10.59079 -10.28102 -10.00008 -9.65273 -9.08480 -8.46904 -5.95086 1.35396 1.40568 1.54429 1.54630 1.97881 2.06107 2.27871 2.75967 2.90538 3.20002 3.30722 3.40337 3.54556 3.74025 3.83639 3.96238 4.00396 4.12440 4.14343 4.21633 4.26514 4.28409 4.34752 4.37495 4.45594 4.49066 4.52939 4.54418 4.57943 4.68738 4.76469 4.82185 4.87335 4.89843 4.90757 4.95477 5.02183 5.09891 5.14008 5.20259 5.35909 5.41166 5.63710 5.88529 5.92351 6.14323 6.33557 6.54959 6.60969 7.13448 7.17047 7.57207 8.13033 8.70773 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.002337 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.987945 B =11978.774041 C =12149.258933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.088 3.912 3 H 0.119 0.881 4 O -0.400 6.400 5 C 0.046 3.954 6 C -0.145 4.145 7 C -0.144 4.144 8 H 0.145 0.855 9 C 0.516 3.484 10 O -0.587 6.587 11 N -0.601 5.601 12 C 0.096 3.904 13 C -0.127 4.127 14 C 0.069 3.931 15 N -0.549 5.549 16 C 0.065 3.935 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.076 3.924 29 C 0.134 3.866 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.038 0.962 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.056 0.944 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.000 1.000 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 21.102 15.108 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.136 0.864 4 O -0.320 6.320 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.165 4.165 8 H 0.162 0.838 9 C 0.306 3.694 10 O -0.467 6.467 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.165 4.165 14 C -0.057 4.057 15 N -0.274 5.274 16 C -0.066 4.066 17 C 0.227 3.773 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.055 4.055 29 C 0.009 3.991 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.074 0.926 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.150 20.546 15.772 27.471 hybrid contribution 0.363 -1.812 -0.769 2.001 sum 9.513 18.734 15.003 25.818 Atomic orbital electron populations 1.22041 0.93619 1.01566 1.04325 1.23098 0.95255 0.96116 0.82454 0.86390 1.89155 1.28714 1.75189 1.38895 1.23533 0.83963 1.00991 0.94499 1.22986 0.97350 1.00903 0.97030 1.23043 0.94600 0.97603 1.01216 0.83794 1.20951 0.81836 0.87902 0.78709 1.90682 1.71716 1.25954 1.58366 1.48004 1.37852 1.12704 1.34674 1.22536 1.04831 0.80134 0.94955 1.21883 1.01636 0.99254 0.93766 1.21718 0.93391 0.89090 1.01534 1.57822 1.56001 1.10384 1.03154 1.21735 0.93956 0.96271 0.94594 1.20871 0.90083 0.84011 0.82309 1.90460 1.32706 1.71669 1.54978 1.41961 1.17939 1.35510 1.25967 1.19667 0.97862 1.17147 1.11183 0.90420 1.26015 1.00133 0.99517 0.95696 1.69675 1.26971 1.40745 1.18888 0.84896 0.77694 0.77700 0.78205 1.19892 1.19432 1.19797 1.21482 0.97517 0.95882 0.90595 1.21208 0.92913 0.90837 0.94124 0.95173 0.90618 0.88617 0.89461 0.88981 0.92580 0.86956 0.89497 0.86755 0.91654 0.86367 0.94356 0.89178 0.86516 0.92625 0.77103 0.91360 0.98213 0.91650 0.91914 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.55 71.98 0.62 -1.99 16 2 C 0.09 1.31 3.83 31.10 0.12 1.43 16 3 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 4 O -0.40 -8.63 11.34 -148.98 -1.69 -10.32 16 5 C 0.05 0.71 7.63 72.49 0.55 1.26 16 6 C -0.14 -2.35 6.60 31.61 0.21 -2.15 16 7 C -0.14 -2.24 2.71 -10.52 -0.03 -2.27 16 8 H 0.14 1.09 5.82 -2.39 -0.01 1.08 16 9 C 0.52 13.02 4.60 87.66 0.40 13.43 16 10 O -0.59 -21.31 15.13 -3.02 -0.05 -21.36 16 11 N -0.60 -13.46 2.06 -817.90 -1.68 -15.14 16 12 C 0.10 1.19 4.88 86.44 0.42 1.61 16 13 C -0.13 -1.82 5.77 30.27 0.17 -1.64 16 14 C 0.07 1.40 5.32 85.84 0.46 1.86 16 15 N -0.55 -17.07 3.60 -916.41 -3.30 -20.37 16 16 C 0.07 2.24 5.44 85.56 0.47 2.70 16 17 C 0.44 20.99 7.37 87.66 0.65 21.63 16 18 O -0.61 -33.69 13.96 -3.05 -0.04 -33.73 16 19 N -0.58 -29.80 5.29 -307.00 -1.62 -31.42 16 20 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 21 H 0.08 4.77 7.16 -2.92 -0.02 4.75 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.16 13.05 21.66 0.28 -49.87 16 24 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.08 2.67 5.02 87.91 0.44 3.12 16 29 C 0.13 4.06 5.55 87.29 0.48 4.55 16 30 H 0.03 0.74 7.02 -2.39 -0.02 0.72 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.12 5.51 -2.39 -0.01 1.10 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.34 6.93 -2.39 -0.02 1.33 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.83 6.95 -2.39 -0.02 0.81 16 38 H 0.11 0.66 5.18 -2.39 -0.01 0.65 16 39 H 0.06 1.29 7.98 -2.39 -0.02 1.27 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.77 7.32 -2.39 -0.02 0.76 16 42 H 0.09 1.52 7.36 -2.38 -0.02 1.51 16 43 H 0.12 3.35 7.57 -2.39 -0.02 3.33 16 44 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 45 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 46 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.00 0.00 8.12 -2.39 -0.02 -0.02 16 48 H 0.07 2.91 5.61 -2.39 -0.01 2.90 16 49 H 0.06 2.19 7.22 -2.39 -0.02 2.17 16 50 H 0.09 2.60 8.11 -2.39 -0.02 2.58 16 Total: -1.00 -79.99 380.77 0.40 -79.59 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.23 Total: 31.83 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 6.24 Total: 25.20 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.32 Total: -116.81 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -1.78 Total: -65.41 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -79.99 0.40 -79.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197554507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.218 kcal (2) G-P(sol) polarization free energy of solvation -79.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds