Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.56446 * 2 1 4 4 C 1.53078 * 117.49044 * 145.70680 * 2 1 3 5 5 C 1.52998 * 117.49444 * 214.30519 * 2 1 3 6 6 H 1.08997 * 117.50147 * 0.03275 * 5 2 1 7 7 C 1.50703 * 117.49392 * 145.02421 * 5 2 1 8 8 O 1.21281 * 120.00252 * 359.91449 * 7 5 2 9 9 N 1.34779 * 119.99752 * 179.91412 * 7 5 2 10 10 C 1.47504 * 118.75866 * 359.97438 * 9 7 5 11 11 C 1.53574 * 111.02645 * 221.62672 * 10 9 7 12 12 C 1.51527 * 109.58333 * 39.97849 * 11 10 9 13 13 O 1.42153 * 108.76637 * 268.59999 * 12 11 10 14 14 C 1.38015 * 119.43698 * 87.21794 * 13 12 11 15 15 H 1.09002 * 109.46810 * 56.57770 * 14 13 12 16 16 C 1.53003 * 109.47138 * 176.57472 * 14 13 12 17 17 N 1.46903 * 109.47090 * 300.00127 * 16 14 13 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47035 * 300.00609 * 26 24 22 30 30 C 1.45124 * 118.75327 * 179.97438 * 9 7 5 31 31 H 1.08999 * 109.47327 * 205.69006 * 1 2 3 32 32 H 1.09010 * 109.47207 * 325.69307 * 1 2 3 33 33 H 1.09001 * 109.47011 * 85.68629 * 1 2 3 34 34 H 1.08998 * 117.49085 * 0.02562 * 4 2 1 35 35 H 1.08992 * 117.53481 * 214.95304 * 4 2 1 36 36 H 1.09001 * 109.16487 * 101.22791 * 10 9 7 37 37 H 1.09000 * 109.16775 * 342.02832 * 10 9 7 38 38 H 1.09000 * 109.45192 * 279.94176 * 11 10 9 39 39 H 1.09000 * 109.43191 * 160.00418 * 11 10 9 40 40 H 1.09006 * 109.59175 * 148.81642 * 12 11 10 41 41 H 1.08997 * 109.70776 * 28.45549 * 12 11 10 42 42 H 1.08993 * 109.47042 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.46902 * 59.99657 * 16 14 13 44 44 H 1.00893 * 110.99793 * 303.95597 * 17 16 14 45 45 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 46 46 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.46575 * 330.69345 * 30 9 7 50 50 H 1.09005 * 109.45674 * 210.72979 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1219 0.7651 5 6 2.2363 -1.1211 -0.7649 6 1 1.6111 -1.8583 -1.2685 7 6 3.5292 -0.7813 -1.4607 8 8 3.9710 0.3467 -1.4025 9 7 4.1945 -1.7309 -2.1478 10 6 3.6327 -3.0938 -2.2002 11 6 4.7345 -4.1507 -2.0351 12 6 5.7254 -3.6916 -0.9846 13 8 6.7697 -2.9707 -1.6250 14 6 6.6235 -1.6159 -1.8440 15 1 6.4299 -1.1135 -0.8963 16 6 7.9061 -1.0581 -2.4643 17 7 9.0324 -1.2875 -1.5494 18 6 10.2837 -0.7642 -2.1134 19 6 11.4137 -1.0166 -1.1488 20 8 11.1979 -1.5777 -0.0953 21 7 12.6641 -0.6189 -1.4567 22 6 13.6922 -0.8490 -0.5794 23 1 13.5002 -1.3493 0.3583 24 6 14.9814 -0.4394 -0.8971 25 7 15.2151 0.1689 -2.0382 26 14 16.3821 -0.7523 0.2986 27 1 16.5168 -2.2127 0.5319 28 1 17.6470 -0.2228 -0.2713 29 1 16.0957 -0.0697 1.5859 30 6 5.4366 -1.3739 -2.8080 31 1 -0.3634 -0.9261 0.4455 32 1 -0.3634 0.8490 0.5793 33 1 -0.3633 0.0773 -1.0248 34 1 1.6111 -1.8596 1.2677 35 1 3.1719 -0.8771 1.2684 36 1 3.1375 -3.2400 -3.1602 37 1 2.9018 -3.2106 -1.4001 38 1 5.2506 -4.2886 -2.9852 39 1 4.2875 -5.0951 -1.7245 40 1 6.1413 -4.5584 -0.4709 41 1 5.2240 -3.0456 -0.2638 42 1 7.7907 0.0119 -2.6368 43 1 8.0997 -1.5606 -3.4120 44 1 8.8486 -0.8862 -0.6421 45 1 10.1849 0.3078 -2.2842 46 1 10.4936 -1.2648 -3.0586 47 1 12.8366 -0.1699 -2.2990 48 1 16.1150 0.4551 -2.2599 49 1 5.4078 -0.3218 -3.0916 50 1 5.5627 -1.9870 -3.7004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201154611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -81.935969 kcal Electronic energy + Delta-G solvation = -29756.610813 eV Core-core repulsion = 25591.981112 eV Total energy + Delta-G solvation = -4164.629701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01177 -39.20013 -38.15933 -37.12990 -36.00338 -35.20571 -33.82818 -32.91759 -31.15641 -30.11003 -29.15244 -27.61852 -26.43932 -25.21855 -23.99924 -22.79977 -21.95182 -21.49133 -21.07820 -19.18318 -19.10969 -18.00146 -17.81634 -16.92837 -16.80439 -16.28338 -15.84426 -15.56746 -15.21106 -14.96939 -14.49926 -14.42859 -14.25170 -14.09267 -13.90052 -13.66484 -13.47991 -13.33086 -13.10917 -13.05907 -12.78733 -12.48669 -12.38647 -11.87992 -11.86898 -11.79162 -11.66177 -11.45026 -11.40795 -11.26979 -10.96483 -10.80477 -10.57448 -10.45673 -10.39866 -10.15852 -10.04092 -9.70672 -9.44009 -8.87872 -8.36641 -7.93968 -7.87843 -6.35763 -3.76333 2.13299 2.54297 3.24507 3.29401 3.34244 3.38316 3.59238 3.97119 3.98816 4.12657 4.29866 4.30899 4.33069 4.41485 4.55268 4.62033 4.76639 4.88583 4.92588 4.97900 5.08799 5.15575 5.19314 5.21623 5.27593 5.28455 5.30011 5.31136 5.32615 5.40371 5.51698 5.54814 5.60394 5.61652 5.73615 5.85104 5.88299 5.89592 5.94787 6.06870 6.24590 6.34299 6.94355 7.29117 7.60611 7.63406 7.78610 7.85289 8.12685 8.68357 9.24078 9.61200 10.13374 10.82068 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.001915 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.973040 B =14619.659105 C =14982.448956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.195 4.195 6 H 0.124 0.876 7 C 0.538 3.462 8 O -0.534 6.534 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.361 6.361 14 C 0.100 3.900 15 H 0.049 0.951 16 C 0.071 3.929 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.443 3.557 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.079 3.921 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.092 0.908 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.679 -4.849 -2.608 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.216 4.216 6 H 0.141 0.859 7 C 0.326 3.674 8 O -0.411 6.411 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.205 4.205 12 C -0.003 4.003 13 O -0.279 6.279 14 C 0.039 3.961 15 H 0.067 0.933 16 C -0.060 4.060 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.228 3.772 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 C -0.045 4.045 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.167 0.833 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.116 -5.295 -2.246 30.661 hybrid contribution 0.442 1.063 -0.010 1.151 sum -29.675 -4.232 -2.256 30.060 Atomic orbital electron populations 1.21402 0.92124 1.02319 1.02189 1.22409 0.95265 0.95129 1.01242 0.86450 1.23135 1.03307 1.01614 0.90457 1.22353 0.97823 1.05448 0.95975 0.85855 1.19828 0.84756 0.84535 0.78266 1.90711 1.68750 1.20975 1.60663 1.47806 1.23549 1.10198 1.52404 1.22033 0.96307 0.80833 1.02513 1.22511 0.97370 0.98440 1.02225 1.22133 0.88618 0.95973 0.93534 1.86458 1.42632 1.20140 1.78628 1.21943 0.93760 0.83217 0.97160 0.93293 1.21903 0.89201 0.97691 0.97182 1.59947 1.00311 1.63550 1.05209 1.21680 0.90294 0.97647 0.98555 1.19817 0.83873 0.84863 0.88636 1.90523 1.83527 1.46274 1.26226 1.41850 1.05985 1.52276 1.20108 1.19656 0.86122 1.35842 1.01179 0.88011 1.25254 0.98690 0.96927 0.97142 1.69607 1.22587 1.39947 1.22320 0.85915 0.79525 0.78826 0.79919 1.19914 1.21020 1.19970 1.22406 0.83031 1.02860 0.96168 0.92324 0.91556 0.91970 0.87642 0.88167 0.91452 0.89573 0.89910 0.89496 0.89008 0.93425 0.93875 0.90169 0.83325 0.94002 0.89538 0.77468 0.91892 0.88950 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 2 C -0.12 -0.91 5.92 -90.58 -0.54 -1.44 16 3 H 0.12 1.11 7.67 -51.93 -0.40 0.71 16 4 C -0.15 -1.00 9.88 -26.69 -0.26 -1.26 16 5 C -0.19 -1.46 4.47 -91.77 -0.41 -1.87 16 6 H 0.12 0.65 6.95 -51.93 -0.36 0.29 16 7 C 0.54 5.83 7.41 -10.98 -0.08 5.75 16 8 O -0.53 -7.87 15.69 5.56 0.09 -7.78 16 9 N -0.61 -5.67 2.19 -172.47 -0.38 -6.05 16 10 C 0.11 0.65 5.88 -3.20 -0.02 0.63 16 11 C -0.17 -1.13 5.78 -27.18 -0.16 -1.29 16 12 C 0.07 0.73 6.37 36.41 0.23 0.97 16 13 O -0.36 -4.87 9.32 -26.53 -0.25 -5.11 16 14 C 0.10 1.27 2.85 -25.78 -0.07 1.20 16 15 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 16 C 0.07 0.96 5.38 -3.82 -0.02 0.94 16 17 N -0.66 -11.70 5.98 -115.06 -0.69 -12.39 16 18 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 19 C 0.44 10.96 7.82 -10.98 -0.09 10.87 16 20 O -0.58 -16.53 15.78 5.54 0.09 -16.44 16 21 N -0.57 -14.85 5.29 -10.96 -0.06 -14.90 16 22 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 23 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.11 13.05 55.50 0.72 -24.38 16 26 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 30 C 0.08 0.83 4.86 -3.83 -0.02 0.81 16 31 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 32 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.40 5.85 -51.93 -0.30 0.09 16 38 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.48 7.41 -51.93 -0.38 0.09 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.35 6.49 8.43 -39.30 -0.33 6.16 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 49 H 0.09 1.05 7.27 -51.93 -0.38 0.67 16 50 H 0.09 0.79 8.11 -51.93 -0.42 0.36 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -35.09 404.91 -9.03 -44.11 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.31 Total: 12.55 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.33 Total: 7.76 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.40 Total: -57.72 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.07 Total: -29.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.09 -9.03 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201154611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.822 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds