Wall clock time and date at job start Sat Apr 11 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.56446 * 2 1 4 4 C 1.53078 * 117.49044 * 145.70680 * 2 1 3 5 5 C 1.52998 * 117.49444 * 214.30519 * 2 1 3 6 6 H 1.08997 * 117.50147 * 0.03275 * 5 2 1 7 7 C 1.50703 * 117.49392 * 145.02421 * 5 2 1 8 8 O 1.21281 * 120.00252 * 359.91449 * 7 5 2 9 9 N 1.34779 * 119.99752 * 179.91412 * 7 5 2 10 10 C 1.47504 * 118.75866 * 359.97438 * 9 7 5 11 11 C 1.53574 * 111.02645 * 221.62672 * 10 9 7 12 12 C 1.51527 * 109.58333 * 39.97849 * 11 10 9 13 13 O 1.42153 * 108.76637 * 268.59999 * 12 11 10 14 14 C 1.38015 * 119.43698 * 87.21794 * 13 12 11 15 15 H 1.09002 * 109.46810 * 56.57770 * 14 13 12 16 16 C 1.53003 * 109.47138 * 176.57472 * 14 13 12 17 17 N 1.46903 * 109.47090 * 300.00127 * 16 14 13 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47035 * 300.00609 * 26 24 22 30 30 C 1.45124 * 118.75327 * 179.97438 * 9 7 5 31 31 H 1.08999 * 109.47327 * 205.69006 * 1 2 3 32 32 H 1.09010 * 109.47207 * 325.69307 * 1 2 3 33 33 H 1.09001 * 109.47011 * 85.68629 * 1 2 3 34 34 H 1.08998 * 117.49085 * 0.02562 * 4 2 1 35 35 H 1.08992 * 117.53481 * 214.95304 * 4 2 1 36 36 H 1.09001 * 109.16487 * 101.22791 * 10 9 7 37 37 H 1.09000 * 109.16775 * 342.02832 * 10 9 7 38 38 H 1.09000 * 109.45192 * 279.94176 * 11 10 9 39 39 H 1.09000 * 109.43191 * 160.00418 * 11 10 9 40 40 H 1.09006 * 109.59175 * 148.81642 * 12 11 10 41 41 H 1.08997 * 109.70776 * 28.45549 * 12 11 10 42 42 H 1.08993 * 109.47042 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.46902 * 59.99657 * 16 14 13 44 44 H 1.00893 * 110.99793 * 303.95597 * 17 16 14 45 45 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 46 46 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.46575 * 330.69345 * 30 9 7 50 50 H 1.09005 * 109.45674 * 210.72979 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1219 0.7651 5 6 2.2363 -1.1211 -0.7649 6 1 1.6111 -1.8583 -1.2685 7 6 3.5292 -0.7813 -1.4607 8 8 3.9710 0.3467 -1.4025 9 7 4.1945 -1.7309 -2.1478 10 6 3.6327 -3.0938 -2.2002 11 6 4.7345 -4.1507 -2.0351 12 6 5.7254 -3.6916 -0.9846 13 8 6.7697 -2.9707 -1.6250 14 6 6.6235 -1.6159 -1.8440 15 1 6.4299 -1.1135 -0.8963 16 6 7.9061 -1.0581 -2.4643 17 7 9.0324 -1.2875 -1.5494 18 6 10.2837 -0.7642 -2.1134 19 6 11.4137 -1.0166 -1.1488 20 8 11.1979 -1.5777 -0.0953 21 7 12.6641 -0.6189 -1.4567 22 6 13.6922 -0.8490 -0.5794 23 1 13.5002 -1.3493 0.3583 24 6 14.9814 -0.4394 -0.8971 25 7 15.2151 0.1689 -2.0382 26 14 16.3821 -0.7523 0.2986 27 1 16.5168 -2.2127 0.5319 28 1 17.6470 -0.2228 -0.2713 29 1 16.0957 -0.0697 1.5859 30 6 5.4366 -1.3739 -2.8080 31 1 -0.3634 -0.9261 0.4455 32 1 -0.3634 0.8490 0.5793 33 1 -0.3633 0.0773 -1.0248 34 1 1.6111 -1.8596 1.2677 35 1 3.1719 -0.8771 1.2684 36 1 3.1375 -3.2400 -3.1602 37 1 2.9018 -3.2106 -1.4001 38 1 5.2506 -4.2886 -2.9852 39 1 4.2875 -5.0951 -1.7245 40 1 6.1413 -4.5584 -0.4709 41 1 5.2240 -3.0456 -0.2638 42 1 7.7907 0.0119 -2.6368 43 1 8.0997 -1.5606 -3.4120 44 1 8.8486 -0.8862 -0.6421 45 1 10.1849 0.3078 -2.2842 46 1 10.4936 -1.2648 -3.0586 47 1 12.8366 -0.1699 -2.2990 48 1 16.1150 0.4551 -2.2599 49 1 5.4078 -0.3218 -3.0916 50 1 5.5627 -1.9870 -3.7004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201154611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:37 Heat of formation + Delta-G solvation = -107.455304 kcal Electronic energy + Delta-G solvation = -29757.717414 eV Core-core repulsion = 25591.981112 eV Total energy + Delta-G solvation = -4165.736303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80791 -40.25619 -39.91917 -37.80390 -37.07061 -36.35826 -35.83479 -33.87215 -33.25535 -31.01942 -29.82441 -28.68644 -27.52615 -26.54309 -25.34831 -23.83157 -22.74204 -22.34943 -21.67188 -21.09233 -19.92610 -19.82135 -18.73320 -18.04131 -17.83955 -17.38244 -17.17107 -16.60311 -16.41002 -16.30445 -15.95150 -15.84600 -15.19167 -15.10063 -14.92802 -14.76763 -14.57794 -14.41865 -14.17097 -13.80112 -13.69849 -13.49455 -13.47239 -13.13111 -13.00211 -12.98042 -12.78273 -12.71611 -12.44141 -12.37015 -12.29745 -12.12571 -12.04463 -11.51677 -11.47880 -11.37689 -11.00625 -10.84404 -10.55967 -10.37687 -10.02915 -9.68543 -9.33295 -8.47138 -5.96319 1.35362 1.39425 1.40820 1.52343 1.84078 2.03709 2.28794 2.69074 2.79805 2.87726 3.19563 3.36929 3.47264 3.73039 3.79133 3.81140 3.87163 3.96338 3.99018 4.10745 4.18045 4.26688 4.29885 4.38528 4.40644 4.45241 4.48566 4.53906 4.60381 4.63538 4.72123 4.74633 4.81608 4.83013 4.92714 4.94452 5.00853 5.10960 5.17395 5.20417 5.39459 5.39627 5.50991 5.84957 6.07150 6.21856 6.29352 6.59310 6.75313 7.06127 7.11307 7.54536 8.10326 8.70052 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.001915 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.973040 B =14619.659105 C =14982.448956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 H 0.086 0.914 4 C -0.140 4.140 5 C -0.192 4.192 6 H 0.157 0.843 7 C 0.528 3.472 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.157 4.157 12 C 0.066 3.934 13 O -0.386 6.386 14 C 0.108 3.892 15 H 0.021 0.979 16 C 0.072 3.928 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.995 3.005 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.272 1.272 30 C 0.087 3.913 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.338 0.662 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.080 0.920 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.430 -6.291 -3.519 33.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 H 0.105 0.895 4 C -0.177 4.177 5 C -0.212 4.212 6 H 0.174 0.826 7 C 0.318 3.682 8 O -0.466 6.466 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.195 4.195 12 C -0.010 4.010 13 O -0.305 6.305 14 C 0.048 3.952 15 H 0.038 0.962 16 C -0.057 4.057 17 N -0.306 5.306 18 C -0.067 4.067 19 C 0.225 3.775 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.197 1.197 28 H -0.193 1.193 29 H -0.197 1.197 30 C -0.038 4.038 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -31.893 -6.761 -3.201 32.759 hybrid contribution 0.983 1.492 0.287 1.809 sum -30.911 -5.269 -2.914 31.492 Atomic orbital electron populations 1.21387 0.89937 1.03388 1.02670 1.22420 0.96818 0.93921 1.01856 0.89536 1.23191 1.02681 1.01855 0.89959 1.22430 0.96427 1.06159 0.96233 0.82587 1.20502 0.85728 0.84037 0.77961 1.90684 1.70243 1.23184 1.62510 1.47950 1.22797 1.11402 1.51443 1.22330 0.96381 0.78580 1.04704 1.22429 0.96615 0.99787 1.00641 1.22351 0.88721 0.95450 0.94518 1.86399 1.44727 1.20250 1.79132 1.21771 0.94185 0.82879 0.96390 0.96152 1.22001 0.88199 0.98748 0.96794 1.59964 1.01162 1.63877 1.05566 1.21553 0.88481 0.99412 0.97242 1.20856 0.84615 0.83168 0.88899 1.90488 1.84286 1.47881 1.28404 1.41910 1.06313 1.52665 1.20027 1.19643 0.87766 1.37784 1.01416 0.90404 1.26071 1.00426 0.95986 0.98822 1.69668 1.23542 1.39597 1.23225 0.84964 0.76720 0.78706 0.77770 1.19690 1.19293 1.19743 1.22225 0.82826 1.02574 0.96129 0.90435 0.91464 0.91608 0.84586 0.90399 0.89128 0.87401 0.90500 0.86521 0.88913 0.94100 0.92696 0.88829 0.84451 0.91639 0.87464 0.76910 0.91238 0.90183 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.23 16 2 C -0.13 -1.88 5.92 -10.77 -0.06 -1.94 16 3 H 0.09 1.78 7.67 -2.39 -0.02 1.76 16 4 C -0.14 -1.71 9.88 30.62 0.30 -1.41 16 5 C -0.19 -2.57 4.47 -11.54 -0.05 -2.62 16 6 H 0.16 1.03 6.95 -2.39 -0.02 1.01 16 7 C 0.53 11.37 7.41 87.66 0.65 12.02 16 8 O -0.59 -18.21 15.69 -3.03 -0.05 -18.26 16 9 N -0.60 -10.60 2.19 -817.95 -1.79 -12.39 16 10 C 0.10 0.93 5.88 86.38 0.51 1.44 16 11 C -0.16 -1.70 5.78 30.30 0.18 -1.52 16 12 C 0.07 1.25 6.37 71.50 0.46 1.70 16 13 O -0.39 -10.42 9.32 -117.86 -1.10 -11.51 16 14 C 0.11 2.81 2.85 31.21 0.09 2.90 16 15 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 16 C 0.07 1.95 5.38 86.30 0.46 2.41 16 17 N -0.67 -24.25 5.98 -517.93 -3.10 -27.35 16 18 C 0.07 2.44 6.17 85.56 0.53 2.97 16 19 C 0.44 22.12 7.82 87.66 0.69 22.81 16 20 O -0.62 -36.76 15.78 -3.08 -0.05 -36.81 16 21 N -0.57 -30.67 5.29 -306.98 -1.62 -32.29 16 22 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -50.75 13.05 21.66 0.28 -50.46 16 26 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 30 C 0.09 1.78 4.86 87.25 0.42 2.20 16 31 H 0.08 0.36 7.90 -2.39 -0.02 0.34 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.14 0.83 8.05 -2.39 -0.02 0.81 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.55 5.85 -2.39 -0.01 0.54 16 38 H 0.08 0.98 8.01 -2.39 -0.02 0.96 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.04 0.82 7.41 -2.39 -0.02 0.80 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.34 13.14 8.43 -89.70 -0.76 12.39 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 47 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 48 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 49 H 0.08 1.85 7.27 -2.39 -0.02 1.83 16 50 H 0.10 1.73 8.11 -2.38 -0.02 1.72 16 Total: -1.00 -79.62 404.91 0.25 -79.37 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.53 Total: 42.18 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 6.18 Total: 21.48 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.23 Total: -122.50 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -1.19 Total: -66.59 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.62 0.25 -79.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201154611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.081 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds