Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 115.56733 * 2 1 4 4 C 1.53001 * 117.49671 * 214.30839 * 2 1 3 5 5 C 1.52999 * 60.00063 * 252.51340 * 4 2 1 6 6 H 1.08998 * 117.49836 * 107.52065 * 5 4 2 7 7 C 1.50702 * 117.49724 * 252.50801 * 5 4 2 8 8 O 1.21282 * 119.99454 * 74.33717 * 7 5 4 9 9 N 1.34767 * 120.00323 * 254.33490 * 7 5 4 10 10 C 1.47514 * 118.75955 * 174.60456 * 9 7 5 11 11 C 1.53568 * 111.03275 * 221.63410 * 10 9 7 12 12 C 1.51528 * 109.58020 * 39.97814 * 11 10 9 13 13 O 1.42080 * 108.76037 * 268.58897 * 12 11 10 14 14 C 1.38013 * 119.43905 * 87.25221 * 13 12 11 15 15 H 1.08996 * 109.47657 * 56.55379 * 14 13 12 16 16 C 1.53001 * 109.46759 * 176.55354 * 14 13 12 17 17 N 1.46889 * 109.47157 * 300.00269 * 16 14 13 18 18 C 1.46903 * 111.00284 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47315 * 179.97438 * 18 17 16 20 20 O 1.21289 * 120.00245 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99938 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99680 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00376 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99792 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99837 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00038 * 179.72603 * 24 22 21 27 27 H 1.48498 * 109.47187 * 180.27900 * 26 24 22 28 28 H 1.48500 * 109.46923 * 300.27435 * 26 24 22 29 29 H 1.48497 * 109.47268 * 60.27742 * 26 24 22 30 30 C 1.45123 * 118.75979 * 354.63498 * 9 7 5 31 31 H 1.09000 * 109.46778 * 274.31232 * 1 2 3 32 32 H 1.08992 * 109.46957 * 34.31169 * 1 2 3 33 33 H 1.09002 * 109.47294 * 154.31322 * 1 2 3 34 34 H 1.09005 * 117.49851 * 145.02079 * 4 2 1 35 35 H 1.09004 * 117.49924 * 0.02562 * 4 2 1 36 36 H 1.09002 * 109.16726 * 342.03527 * 10 9 7 37 37 H 1.09007 * 109.16236 * 101.28733 * 10 9 7 38 38 H 1.08998 * 109.45108 * 160.01219 * 11 10 9 39 39 H 1.09003 * 109.44994 * 279.94346 * 11 10 9 40 40 H 1.09000 * 109.59272 * 28.37779 * 12 11 10 41 41 H 1.09004 * 109.59386 * 148.67185 * 12 11 10 42 42 H 1.09003 * 109.46723 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.47262 * 60.00957 * 16 14 13 44 44 H 1.00905 * 111.00016 * 56.05085 * 17 16 14 45 45 H 1.09000 * 109.46810 * 60.00142 * 18 17 16 46 46 H 1.09002 * 109.47050 * 299.99989 * 18 17 16 47 47 H 0.96995 * 119.99499 * 0.02562 * 21 19 18 48 48 H 0.96998 * 120.00118 * 359.72491 * 25 24 22 49 49 H 1.09003 * 109.45268 * 330.69218 * 30 9 7 50 50 H 1.08995 * 109.46197 * 210.73868 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6115 -1.8588 1.2683 7 6 3.5293 -0.7813 1.4608 8 8 3.9190 0.3669 1.4892 9 7 4.2523 -1.7531 2.0515 10 6 5.5703 -1.4117 2.6193 11 6 6.6048 -2.5026 2.3060 12 6 6.4053 -2.9994 0.8885 13 8 5.5173 -4.1083 0.9136 14 6 4.1561 -3.8887 0.8533 15 1 3.9196 -3.3166 -0.0438 16 6 3.4244 -5.2317 0.8093 17 7 3.8522 -5.9837 -0.3778 18 6 3.1683 -7.2816 -0.4536 19 6 3.6311 -8.0223 -1.6817 20 8 4.4505 -7.5189 -2.4208 21 7 3.1345 -9.2443 -1.9587 22 6 3.5560 -9.9184 -3.0756 23 1 4.2862 -9.4705 -3.7332 24 6 3.0445 -11.1784 -3.3609 25 7 2.1563 -11.7237 -2.5604 26 14 3.6130 -12.0937 -4.8868 27 1 2.9175 -13.4033 -4.9664 28 1 3.2940 -11.2897 -6.0939 29 1 5.0795 -12.3157 -4.8133 30 6 3.7052 -3.0963 2.1044 31 1 -0.3633 0.0773 1.0248 32 1 -0.3633 0.8488 -0.5793 33 1 -0.3634 -0.9261 -0.4454 34 1 3.1715 -0.8753 -1.2683 35 1 1.6111 -1.8583 -1.2686 36 1 5.9082 -0.4658 2.1959 37 1 5.4779 -1.3071 3.7004 38 1 7.6088 -2.0909 2.4085 39 1 6.4800 -3.3319 3.0023 40 1 5.9785 -2.2031 0.2787 41 1 7.3641 -3.3060 0.4702 42 1 2.3493 -5.0583 0.7621 43 1 3.6606 -5.8038 1.7065 44 1 4.8543 -6.1015 -0.3895 45 1 2.0915 -7.1220 -0.5103 46 1 3.4024 -7.8681 0.4348 47 1 2.4790 -9.6467 -1.3678 48 1 1.8608 -11.2483 -1.7683 49 1 2.6167 -3.0441 2.1285 50 1 4.0643 -3.5996 3.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201154616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -84.063272 kcal Electronic energy + Delta-G solvation = -30204.616631 eV Core-core repulsion = 26039.894683 eV Total energy + Delta-G solvation = -4164.721948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07225 -39.28177 -38.36337 -37.21302 -35.79240 -35.43853 -34.24197 -33.26074 -31.08182 -29.94740 -29.09852 -27.51095 -26.68017 -24.89484 -24.07882 -23.24272 -21.89565 -21.35246 -20.89665 -19.65524 -19.17225 -17.89719 -17.84152 -17.32987 -16.83384 -16.61677 -16.12290 -15.44745 -15.27721 -15.12984 -14.80279 -14.52142 -14.23799 -13.93438 -13.80841 -13.73526 -13.59534 -13.47886 -13.16086 -12.99418 -12.82307 -12.65747 -12.32248 -12.06955 -11.97427 -11.71812 -11.67025 -11.58639 -11.29581 -11.19094 -10.93608 -10.87347 -10.58838 -10.36074 -10.19863 -10.06890 -9.85404 -9.82649 -9.53212 -8.95188 -8.49565 -8.11251 -8.01381 -6.74161 -3.87101 2.15484 2.51243 3.32144 3.35765 3.41725 3.46967 3.56060 3.86158 3.92380 4.14913 4.32204 4.41223 4.43362 4.45539 4.57726 4.61575 4.70626 4.85004 4.86779 4.95218 4.99752 5.02126 5.11512 5.18729 5.25109 5.29339 5.31725 5.39764 5.42640 5.44281 5.49757 5.51031 5.63551 5.65007 5.71104 5.72746 5.77154 5.83251 5.87264 5.99960 6.03445 6.13940 6.93841 7.11987 7.43109 7.65680 7.81639 7.82651 8.09551 8.61801 8.81728 9.49183 9.89852 10.69447 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.002267 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.808872 B =12349.984520 C =13479.042053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.115 0.885 4 C -0.144 4.144 5 C -0.196 4.196 6 H 0.126 0.874 7 C 0.543 3.457 8 O -0.541 6.541 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.166 4.166 12 C 0.078 3.922 13 O -0.380 6.380 14 C 0.092 3.908 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.444 3.556 20 O -0.575 6.575 21 N -0.577 5.577 22 C -0.381 4.381 23 H 0.099 0.901 24 C -0.010 4.010 25 N -0.902 5.902 26 Si 1.091 2.909 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 C 0.074 3.926 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.359 0.641 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.375 0.625 48 H 0.261 0.739 49 H 0.090 0.910 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 20.452 13.214 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.133 0.867 4 C -0.181 4.181 5 C -0.217 4.217 6 H 0.143 0.857 7 C 0.331 3.669 8 O -0.418 6.418 9 N -0.339 5.339 10 C -0.011 4.011 11 C -0.205 4.205 12 C 0.002 3.998 13 O -0.298 6.298 14 C 0.032 3.968 15 H 0.083 0.917 16 C -0.059 4.059 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.230 3.770 20 O -0.458 6.458 21 N -0.215 5.215 22 C -0.511 4.511 23 H 0.116 0.884 24 C -0.212 4.212 25 N -0.542 5.542 26 Si 0.917 3.083 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.051 4.051 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.180 0.820 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.208 0.792 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.206 20.107 11.462 23.146 hybrid contribution 0.144 0.862 2.217 2.383 sum 0.350 20.970 13.679 25.039 Atomic orbital electron populations 1.21403 0.92110 1.02499 1.02102 1.22387 0.95366 0.94911 1.01448 0.86707 1.23143 1.03210 1.01465 0.90270 1.22357 0.97592 1.05473 0.96262 0.85670 1.19854 0.84822 0.84669 0.77525 1.90674 1.71200 1.19906 1.59997 1.47786 1.18883 1.09163 1.58111 1.21830 0.81695 0.99193 0.98382 1.22504 0.99386 0.99260 0.99314 1.22121 0.93616 0.88945 0.95156 1.86240 1.15568 1.34410 1.93605 1.22116 0.81968 0.96369 0.96338 0.91651 1.21905 0.98965 0.92522 0.92537 1.60035 1.13277 1.18034 1.38442 1.21675 0.99673 0.90052 0.96859 1.19729 0.86135 0.82810 0.88338 1.90533 1.36109 1.67792 1.51376 1.41935 1.39400 1.15623 1.24570 1.20531 1.26035 1.01718 1.02772 0.88355 1.26500 0.95596 0.94629 1.04496 1.70901 1.29522 1.39934 1.13807 0.83135 0.75959 0.75865 0.73338 1.20434 1.20995 1.21032 1.22570 0.99808 0.82393 1.00295 0.92052 0.91641 0.92072 0.88391 0.87199 0.89178 0.91654 0.89436 0.90116 0.93049 0.88877 0.89761 0.94632 0.82029 0.89729 0.93925 0.79173 0.92786 0.89207 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.19 37.16 0.38 -0.46 16 2 C -0.12 -1.06 5.92 -90.62 -0.54 -1.59 16 3 H 0.11 1.15 7.68 -51.93 -0.40 0.75 16 4 C -0.14 -1.26 9.70 -26.73 -0.26 -1.52 16 5 C -0.20 -1.74 4.82 -91.77 -0.44 -2.18 16 6 H 0.13 0.90 6.49 -51.93 -0.34 0.56 16 7 C 0.54 6.00 7.40 -10.99 -0.08 5.92 16 8 O -0.54 -7.70 15.62 5.56 0.09 -7.61 16 9 N -0.61 -5.67 2.19 -172.47 -0.38 -6.04 16 10 C 0.11 0.94 6.12 -3.19 -0.02 0.92 16 11 C -0.17 -1.25 5.78 -27.18 -0.16 -1.41 16 12 C 0.08 0.75 6.37 36.41 0.23 0.98 16 13 O -0.38 -4.43 8.79 -26.53 -0.23 -4.66 16 14 C 0.09 0.96 2.91 -25.78 -0.08 0.89 16 15 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 16 C 0.07 0.80 5.42 -3.83 -0.02 0.78 16 17 N -0.66 -10.58 6.12 -115.06 -0.70 -11.29 16 18 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 19 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 20 O -0.57 -15.85 15.78 5.55 0.09 -15.76 16 21 N -0.58 -14.52 5.28 -10.96 -0.06 -14.57 16 22 C -0.38 -10.76 9.68 -14.93 -0.14 -10.90 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 25 N -0.90 -25.27 13.68 55.50 0.76 -24.51 16 26 Si 1.09 24.31 29.92 -169.99 -5.09 19.23 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 C 0.07 0.60 4.63 -3.83 -0.02 0.58 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.11 0.88 8.05 -51.93 -0.42 0.47 16 36 H 0.09 0.87 7.06 -51.93 -0.37 0.50 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.62 8.01 -51.93 -0.42 0.21 16 40 H 0.05 0.54 7.40 -51.93 -0.38 0.15 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.36 6.32 7.83 -39.29 -0.31 6.01 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.38 8.67 6.73 -40.82 -0.27 8.39 16 48 H 0.26 7.00 6.78 -40.82 -0.28 6.72 16 49 H 0.09 0.58 5.97 -51.93 -0.31 0.27 16 50 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -34.85 401.61 -8.96 -43.81 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.13 Total: 12.48 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.36 Total: 2.87 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.38 Total: -56.41 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.03 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.09 Total: 19.23 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.85 -8.96 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201154616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.257 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds