Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45859 * 2 1 4 4 C 1.54482 * 110.62636 * 237.31236 * 2 1 3 5 5 O 1.44427 * 104.80148 * 217.31953 * 4 2 1 6 6 C 1.44424 * 105.27650 * 40.51527 * 5 4 2 7 7 H 1.09003 * 110.37616 * 78.31444 * 6 5 4 8 8 C 1.50694 * 110.37617 * 200.65574 * 6 5 4 9 9 O 1.21285 * 119.99855 * 0.37862 * 8 6 5 10 10 N 1.34768 * 120.00511 * 180.37807 * 8 6 5 11 11 C 1.46930 * 120.62843 * 359.72141 * 10 8 6 12 12 C 1.52758 * 109.00724 * 233.58301 * 11 10 8 13 13 C 1.53042 * 109.38477 * 305.58520 * 12 11 10 14 14 N 1.46900 * 109.44979 * 181.25511 * 13 12 11 15 15 C 1.46895 * 111.00018 * 84.94086 * 14 13 12 16 16 C 1.50702 * 109.47242 * 180.02562 * 15 14 13 17 17 O 1.21296 * 120.00090 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00365 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00150 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99997 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00042 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00015 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47029 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47043 * 120.00430 * 23 21 19 26 26 H 1.48505 * 109.47036 * 239.99918 * 23 21 19 27 27 C 1.53039 * 109.53508 * 61.24275 * 13 12 11 28 28 C 1.46928 * 120.63412 * 179.97438 * 10 8 6 29 29 C 1.54483 * 104.80039 * 319.48511 * 6 5 4 30 30 H 1.08998 * 109.47227 * 299.30547 * 1 2 3 31 31 H 1.09003 * 109.46357 * 59.29988 * 1 2 3 32 32 H 1.08998 * 109.47114 * 179.29670 * 1 2 3 33 33 H 1.08999 * 110.37325 * 336.15462 * 4 2 1 34 34 H 1.09000 * 110.36935 * 98.49059 * 4 2 1 35 35 H 1.08998 * 109.58810 * 353.41690 * 11 10 8 36 36 H 1.09000 * 109.58794 * 113.84181 * 11 10 8 37 37 H 1.09000 * 109.56476 * 185.55506 * 12 11 10 38 38 H 1.09004 * 109.38867 * 65.51547 * 12 11 10 39 39 H 1.09005 * 109.46345 * 301.22139 * 13 12 11 40 40 H 1.00903 * 111.00293 * 320.98544 * 14 13 12 41 41 H 1.08995 * 109.47276 * 299.99854 * 15 14 13 42 42 H 1.09001 * 109.47188 * 60.00244 * 15 14 13 43 43 H 0.96996 * 119.99321 * 0.02562 * 18 16 15 44 44 H 0.97000 * 120.00272 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.49708 * 178.68330 * 27 13 12 46 46 H 1.09000 * 109.49899 * 58.58659 * 27 13 12 47 47 H 1.08997 * 109.59062 * 246.15722 * 28 10 8 48 48 H 1.09003 * 109.58710 * 6.44412 * 28 10 8 49 49 H 1.08999 * 110.51172 * 265.33163 * 29 6 5 50 50 H 1.09003 * 110.62777 * 142.68065 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0742 -0.7808 -1.2168 5 8 3.2435 -1.4685 -0.7210 6 6 2.8787 -1.9394 0.5946 7 1 2.2610 -2.8344 0.5196 8 6 4.1129 -2.2195 1.4126 9 8 5.2121 -2.0328 0.9351 10 7 3.9955 -2.6774 2.6747 11 6 2.6707 -2.9027 3.2690 12 6 2.5847 -2.1469 4.5937 13 6 3.7546 -2.5588 5.4904 14 7 3.6565 -1.8553 6.7763 15 6 2.7727 -2.5743 7.7036 16 6 2.6965 -1.8241 9.0084 17 8 3.3178 -0.7922 9.1519 18 7 1.9389 -2.3002 10.0163 19 6 1.8700 -1.6180 11.2035 20 1 2.4226 -0.6989 11.3309 21 6 1.0886 -2.1086 12.2423 22 7 0.4159 -3.2268 12.0871 23 14 0.9941 -1.1787 13.8597 24 1 1.8370 0.0412 13.7792 25 1 -0.4141 -0.7901 14.1257 26 1 1.4840 -2.0478 14.9597 27 6 5.0752 -2.1934 4.8088 28 6 5.1895 -2.9556 3.4843 29 6 2.0714 -0.7797 1.2191 30 1 -0.3633 0.5030 0.8961 31 1 -0.3632 0.5247 -0.8837 32 1 -0.3633 -1.0276 -0.0126 33 1 1.3332 -1.4981 -1.5697 34 1 2.3491 -0.0933 -2.0167 35 1 1.8992 -2.5378 2.5910 36 1 2.5275 -3.9681 3.4493 37 1 1.6442 -2.3861 5.0900 38 1 2.6328 -1.0748 4.4025 39 1 3.7197 -3.6347 5.6615 40 1 3.3464 -0.9041 6.6454 41 1 1.7757 -2.6503 7.2699 42 1 3.1688 -3.5741 7.8815 43 1 1.4430 -3.1259 9.9019 44 1 -0.1294 -3.5695 12.8124 45 1 5.9073 -2.4657 5.4581 46 1 5.1001 -1.1211 4.6150 47 1 5.2556 -4.0253 3.6826 48 1 6.0797 -2.6278 2.9473 49 1 2.7200 -0.1440 1.8218 50 1 1.2490 -1.1652 1.8218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201694976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -115.229745 kcal Electronic energy + Delta-G solvation = -29942.781435 eV Core-core repulsion = 25776.708008 eV Total energy + Delta-G solvation = -4166.073428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05207 -39.43005 -38.42994 -37.60769 -35.21111 -34.02022 -33.87903 -32.27260 -31.32508 -30.97942 -30.07154 -27.00890 -26.69540 -25.06988 -24.08303 -23.56902 -22.81838 -21.14113 -20.92783 -19.64717 -19.08233 -17.92976 -17.83064 -16.79426 -16.46486 -16.08738 -15.61308 -15.39039 -15.29851 -15.03846 -14.86427 -14.60983 -14.43439 -14.11898 -13.92681 -13.89310 -13.55548 -13.49662 -13.33367 -12.87296 -12.76670 -12.61436 -12.27255 -12.03553 -11.92259 -11.71318 -11.61909 -11.50482 -11.45338 -11.30532 -11.14532 -11.10582 -10.93870 -10.66945 -10.38362 -10.36761 -10.25270 -9.83639 -9.55137 -8.96617 -8.50122 -8.08463 -7.98947 -6.44973 -3.85733 2.29856 2.45426 3.13998 3.24900 3.32169 3.53485 3.87033 3.87832 4.03222 4.11560 4.24164 4.27354 4.38419 4.43891 4.64466 4.67445 4.73772 4.74796 4.94203 4.99042 5.03060 5.05407 5.09857 5.14768 5.21023 5.24170 5.25334 5.29486 5.34711 5.47713 5.51244 5.54006 5.58197 5.67510 5.70171 5.72031 5.81175 5.92260 5.95476 6.12499 6.20544 6.25316 6.36452 7.05973 7.18670 7.52569 7.60881 7.88887 8.03467 8.57935 9.15017 9.50999 10.02366 10.72798 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002020 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.922918 B =13861.104202 C =14773.031800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 H 0.087 0.913 4 C 0.045 3.955 5 O -0.345 6.345 6 C 0.059 3.941 7 H 0.094 0.906 8 C 0.521 3.479 9 O -0.522 6.522 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.169 4.169 13 C 0.089 3.911 14 N -0.662 5.662 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.121 4.121 28 C 0.113 3.887 29 C -0.143 4.143 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.350 0.650 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -1.012 -24.700 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.032 4.032 5 O -0.262 6.262 6 C -0.002 4.002 7 H 0.111 0.889 8 C 0.308 3.692 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.020 4.020 12 C -0.209 4.209 13 C -0.022 4.022 14 N -0.293 5.293 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.159 4.159 28 C -0.009 4.009 29 C -0.181 4.181 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.170 0.830 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.380 -0.609 -24.563 24.574 hybrid contribution -1.704 0.031 0.625 1.815 sum -2.084 -0.578 -23.938 24.035 Atomic orbital electron populations 1.21830 0.93542 1.02293 1.02561 1.22555 0.96872 1.00754 0.94354 0.89434 1.23616 0.87789 0.95142 0.96615 1.89280 1.34889 1.73736 1.28334 1.22831 0.93877 0.98478 0.85019 0.88881 1.20179 0.90396 0.77000 0.81646 1.90723 1.27681 1.50925 1.70331 1.48049 1.07829 1.65738 1.12688 1.21823 0.84055 1.00798 0.95360 1.22668 1.00837 1.01303 0.96066 1.21585 0.93469 0.98910 0.88236 1.60168 1.54085 1.05925 1.09157 1.21705 0.95028 0.98359 0.93082 1.19831 0.84258 0.87775 0.85623 1.90532 1.47834 1.25764 1.82582 1.41875 1.41842 1.24230 1.12130 1.19750 1.26662 1.07237 0.89154 0.87874 1.25265 0.96371 0.96457 0.99897 1.69616 1.30331 1.20413 1.33975 0.85802 0.78006 0.79456 0.81104 1.19207 1.20772 1.20719 1.21902 0.98322 1.00918 0.94806 1.21699 0.88133 0.99844 0.91253 1.23145 1.00014 0.96526 0.98441 0.91849 0.92078 0.92242 0.91766 0.88569 0.89508 0.90811 0.90293 0.91038 0.90253 0.83020 0.93928 0.89616 0.77488 0.91918 0.89508 0.91409 0.91180 0.88748 0.89908 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.96 37.16 0.33 -0.31 16 2 C -0.13 -0.77 3.71 -89.05 -0.33 -1.10 16 3 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.05 0.32 7.19 37.94 0.27 0.59 16 5 O -0.34 -3.87 10.91 -54.45 -0.59 -4.46 16 6 C 0.06 0.53 2.77 -27.11 -0.08 0.46 16 7 H 0.09 0.64 7.85 -51.93 -0.41 0.23 16 8 C 0.52 6.14 7.02 -10.99 -0.08 6.06 16 9 O -0.52 -8.41 15.96 -13.66 -0.22 -8.63 16 10 N -0.61 -5.81 2.98 -173.01 -0.52 -6.33 16 11 C 0.10 0.73 5.96 -3.93 -0.02 0.71 16 12 C -0.17 -1.45 5.31 -26.83 -0.14 -1.59 16 13 C 0.09 0.96 2.43 -67.67 -0.16 0.79 16 14 N -0.66 -9.90 5.87 -107.95 -0.63 -10.53 16 15 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 16 C 0.44 10.08 7.82 -10.98 -0.09 10.00 16 17 O -0.58 -15.59 15.78 5.54 0.09 -15.51 16 18 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 19 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.12 -1.27 5.69 -26.59 -0.15 -1.42 16 28 C 0.11 1.11 6.44 -3.69 -0.02 1.09 16 29 C -0.14 -0.99 5.17 -25.16 -0.13 -1.12 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.23 8.13 -51.93 -0.42 -0.19 16 33 H 0.06 0.35 7.86 -51.93 -0.41 -0.06 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.47 3.97 -51.93 -0.21 0.26 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.82 7.80 -51.93 -0.40 0.42 16 40 H 0.35 5.51 8.18 -39.29 -0.32 5.19 16 41 H 0.04 0.61 7.41 -51.93 -0.38 0.23 16 42 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 43 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 49 H 0.08 0.68 7.86 -51.93 -0.41 0.28 16 50 H 0.09 0.46 6.14 -51.93 -0.32 0.14 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -34.42 394.64 -9.24 -43.66 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.09 Total: 10.47 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.87 Total: 7.07 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.48 Total: -54.33 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.72 Total: -28.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.42 -9.24 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201694976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.570 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds