Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.78006 * 2 1 4 4 C 1.55158 * 110.72213 * 236.75782 * 2 1 3 5 5 C 1.55132 * 101.48567 * 205.96862 * 4 2 1 6 6 N 1.47426 * 104.72089 * 37.29557 * 5 4 2 7 7 C 1.34777 * 125.64270 * 155.81784 * 6 5 4 8 8 O 1.21352 * 119.99598 * 179.69113 * 7 6 5 9 9 C 1.49447 * 120.00519 * 359.68953 * 7 6 5 10 10 O 1.21356 * 119.99646 * 6.27744 * 9 7 6 11 11 N 1.34766 * 120.00248 * 186.27566 * 9 7 6 12 12 C 1.47508 * 118.76030 * 178.35045 * 11 9 7 13 13 C 1.53576 * 111.02565 * 138.39660 * 12 11 9 14 14 C 1.51536 * 109.56332 * 320.03031 * 13 12 11 15 15 O 1.42138 * 108.77002 * 91.42782 * 14 13 12 16 16 C 1.38014 * 119.41485 * 272.75207 * 15 14 13 17 17 H 1.08993 * 109.47535 * 303.41596 * 16 15 14 18 18 C 1.53008 * 109.46659 * 183.42206 * 16 15 14 19 19 N 1.46502 * 109.46700 * 64.99088 * 18 16 15 20 20 C 1.36936 * 119.99460 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00278 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99762 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99676 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47283 * 60.00223 * 24 22 20 26 26 H 1.48506 * 109.47132 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47006 * 299.99821 * 24 22 20 28 28 C 1.45118 * 118.76041 * 358.37742 * 11 9 7 29 29 C 1.47025 * 108.70188 * 335.54849 * 6 5 4 30 30 H 1.09004 * 109.47155 * 298.21940 * 1 2 3 31 31 H 1.08999 * 109.47225 * 58.21829 * 1 2 3 32 32 H 1.08992 * 109.47075 * 178.21924 * 1 2 3 33 33 H 1.08997 * 111.00089 * 324.21059 * 4 2 1 34 34 H 1.08997 * 111.00053 * 88.02023 * 4 2 1 35 35 H 1.08997 * 110.49121 * 278.44939 * 5 4 2 36 36 H 1.09001 * 110.33642 * 156.05855 * 5 4 2 37 37 H 1.08998 * 109.16504 * 18.00328 * 12 11 9 38 38 H 1.08999 * 109.17360 * 258.79115 * 12 11 9 39 39 H 1.09000 * 109.45229 * 80.05645 * 13 12 11 40 40 H 1.09000 * 109.45057 * 200.01313 * 13 12 11 41 41 H 1.08993 * 109.59368 * 211.17204 * 14 13 12 42 42 H 1.08995 * 109.59096 * 331.61412 * 14 13 12 43 43 H 1.09001 * 109.47061 * 184.99231 * 18 16 15 44 44 H 1.08998 * 109.47162 * 304.99052 * 18 16 15 45 45 H 0.96993 * 120.00007 * 0.02562 * 19 18 16 46 46 H 0.97007 * 119.99874 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.46334 * 29.28131 * 28 11 9 48 48 H 1.09002 * 109.46882 * 149.24607 * 28 11 9 49 49 H 1.09000 * 109.87386 * 120.71015 * 29 6 5 50 50 H 1.08997 * 109.87968 * 241.86613 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4666 -1.2455 -0.6860 6 7 3.2445 -1.5506 0.7392 7 6 3.9923 -2.3834 1.4899 8 8 3.7193 -2.5560 2.6597 9 6 5.1578 -3.0945 0.8819 10 8 5.5005 -2.8371 -0.2535 11 7 5.8281 -4.0214 1.5944 12 6 6.9510 -4.7327 0.9549 13 6 8.1314 -4.8846 1.9255 14 6 8.2939 -3.6108 2.7301 15 8 7.5355 -3.7258 3.9267 16 6 6.2048 -3.3596 3.9236 17 1 6.1132 -2.3256 3.5914 18 6 5.6359 -3.4931 5.3377 19 7 6.3001 -2.5339 6.2237 20 6 5.9523 -2.4695 7.5467 21 1 5.1888 -3.1261 7.9369 22 6 6.5813 -1.5602 8.3861 23 7 7.5113 -0.7597 7.9104 24 14 6.1074 -1.4728 10.1909 25 1 6.3596 -2.7878 10.8331 26 1 6.9189 -0.4281 10.8657 27 1 4.6667 -1.1326 10.3085 28 6 5.4177 -4.2824 2.9616 29 6 2.0760 -0.7910 1.2073 30 1 -0.3634 0.4859 0.9055 31 1 -0.3633 0.5412 -0.8736 32 1 -0.3633 -1.0271 -0.0319 33 1 1.4451 -1.6536 -1.4374 34 1 2.1843 -0.1521 -2.0872 35 1 4.1946 -0.4414 -0.7929 36 1 3.8031 -2.1362 -1.2167 37 1 7.2777 -4.1718 0.0792 38 1 6.6163 -5.7215 0.6412 39 1 7.9410 -5.7188 2.6009 40 1 9.0437 -5.0758 1.3605 41 1 9.3455 -3.4663 2.9773 42 1 7.9331 -2.7626 2.1484 43 1 4.5652 -3.2898 5.3193 44 1 5.8073 -4.5052 5.7043 45 1 6.9855 -1.9439 5.8731 46 1 7.9506 -0.1240 8.4969 47 1 4.3501 -4.0874 3.0639 48 1 5.6217 -5.3241 3.2096 49 1 1.3130 -1.4757 1.5777 50 1 2.3741 -0.1022 1.9978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201824191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -69.479171 kcal Electronic energy + Delta-G solvation = -31424.748301 eV Core-core repulsion = 27260.658767 eV Total energy + Delta-G solvation = -4164.089534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28266 -39.67053 -38.41956 -37.89756 -35.50299 -34.62045 -33.21770 -32.86756 -30.91674 -29.93806 -28.74606 -27.60429 -26.70313 -25.37537 -24.10243 -22.92357 -22.37094 -21.04793 -20.86468 -20.40093 -19.41051 -17.47945 -17.25535 -17.12673 -16.74852 -16.47744 -16.17853 -15.75330 -15.18017 -15.02764 -14.45800 -14.31371 -14.11681 -13.85978 -13.71171 -13.58727 -13.23201 -13.11104 -13.07049 -12.99405 -12.75968 -12.51466 -12.22886 -12.14755 -12.10858 -11.79718 -11.50283 -11.32619 -11.18482 -11.07513 -10.86629 -10.78546 -10.71229 -10.61189 -10.24296 -9.97371 -9.60671 -9.39302 -9.24792 -8.96088 -8.75082 -8.51834 -6.76338 -5.62542 -2.89940 1.34804 2.11085 3.08633 3.21259 3.52731 3.55975 3.57702 3.94581 4.05733 4.23678 4.28698 4.46550 4.68266 4.73259 4.85185 4.96340 4.99614 5.07269 5.08430 5.22001 5.30766 5.31840 5.37254 5.42818 5.46881 5.54075 5.57616 5.60728 5.63064 5.69408 5.71629 5.74170 5.75467 5.87035 5.91903 5.96077 6.05876 6.15306 6.21113 6.32680 6.43620 6.83416 6.88731 6.91173 7.12792 7.55093 7.80814 7.89809 8.09274 8.55944 9.67046 10.26745 10.62661 11.60578 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.003529 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.138382 B = 7932.135032 C =10211.283478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.132 4.132 5 C 0.099 3.901 6 N -0.592 5.592 7 C 0.514 3.486 8 O -0.494 6.494 9 C 0.505 3.495 10 O -0.527 6.527 11 N -0.574 5.574 12 C 0.107 3.893 13 C -0.165 4.165 14 C 0.073 3.927 15 O -0.370 6.370 16 C 0.098 3.902 17 H 0.047 0.953 18 C 0.170 3.830 19 N -0.726 5.726 20 C -0.234 4.234 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.043 3.957 29 C 0.108 3.892 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.025 0.975 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.135 0.865 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -3.865 -23.560 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.170 4.170 5 C -0.023 4.023 6 N -0.327 5.327 7 C 0.298 3.702 8 O -0.369 6.369 9 C 0.288 3.712 10 O -0.404 6.404 11 N -0.306 5.306 12 C -0.014 4.014 13 C -0.203 4.203 14 C -0.004 4.004 15 O -0.288 6.288 16 C 0.038 3.962 17 H 0.065 0.935 18 C 0.041 3.959 19 N -0.370 5.370 20 C -0.365 4.365 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.079 4.079 29 C -0.014 4.014 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.219 0.781 46 H 0.063 0.937 47 H 0.152 0.848 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.141 -4.010 -23.146 25.206 hybrid contribution 0.020 0.367 0.622 0.723 sum -9.121 -3.643 -22.524 24.572 Atomic orbital electron populations 1.21748 0.93535 1.02308 1.02336 1.22257 0.96556 0.99552 0.94102 0.89410 1.22997 0.95898 1.00393 0.97752 1.22653 0.97035 1.02456 0.80160 1.48243 1.29329 1.42953 1.12201 1.19825 0.83655 0.80634 0.86105 1.90709 1.69946 1.61075 1.15211 1.20090 0.84260 0.80858 0.85995 1.90681 1.67390 1.64463 1.17883 1.47853 1.31192 1.37273 1.14301 1.21980 0.86003 0.96913 0.96508 1.22498 0.97794 1.00949 0.99055 1.22111 0.96394 0.95461 0.86450 1.86439 1.22486 1.86188 1.33720 1.22178 0.81093 0.95998 0.96921 0.93465 1.20579 0.95150 0.94196 0.85929 1.42216 1.46046 1.42438 1.06309 1.19200 1.16363 1.15533 0.85421 0.91253 1.24721 0.99214 0.99165 0.98073 1.69672 1.28618 1.25301 1.34725 0.86266 0.77534 0.77051 0.85335 1.21348 1.21799 1.21363 1.23507 1.04644 1.00893 0.78894 1.22175 0.87189 0.94850 0.97175 0.92035 0.92021 0.92288 0.90441 0.89642 0.90817 0.88551 0.88916 0.91163 0.89898 0.89529 0.89206 0.93676 0.94199 0.95744 0.78073 0.93655 0.84765 0.90134 0.90657 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.13 37.15 0.34 -0.47 16 2 C -0.11 -0.75 3.54 -88.79 -0.31 -1.06 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -0.88 6.54 -24.46 -0.16 -1.04 16 5 C 0.10 0.95 5.99 -2.41 -0.01 0.94 16 6 N -0.59 -7.16 3.32 -170.89 -0.57 -7.73 16 7 C 0.51 7.58 7.77 -11.59 -0.09 7.49 16 8 O -0.49 -8.42 12.62 5.49 0.07 -8.35 16 9 C 0.51 7.28 7.65 -11.59 -0.09 7.19 16 10 O -0.53 -7.72 13.17 5.49 0.07 -7.65 16 11 N -0.57 -7.86 2.19 -172.98 -0.38 -8.24 16 12 C 0.11 1.20 6.16 -3.19 -0.02 1.18 16 13 C -0.16 -1.82 5.79 -27.17 -0.16 -1.98 16 14 C 0.07 1.06 6.37 36.42 0.23 1.29 16 15 O -0.37 -6.99 9.38 -26.53 -0.25 -7.24 16 16 C 0.10 1.85 2.19 -25.77 -0.06 1.79 16 17 H 0.05 0.99 7.84 -51.93 -0.41 0.59 16 18 C 0.17 3.78 5.92 -4.04 -0.02 3.75 16 19 N -0.73 -20.03 5.54 -59.90 -0.33 -20.36 16 20 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.64 13.06 55.49 0.72 -28.91 16 24 Si 0.91 23.31 29.55 -169.99 -5.02 18.28 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.04 0.65 4.44 -3.83 -0.02 0.64 16 29 C 0.11 1.10 6.46 -3.07 -0.02 1.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.00 6.32 -51.93 -0.33 0.67 16 37 H 0.09 1.04 6.98 -51.93 -0.36 0.68 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.96 8.01 -51.93 -0.42 0.55 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.04 0.68 7.40 -51.93 -0.38 0.30 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.39 11.34 7.65 -40.82 -0.31 11.03 16 46 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.14 2.12 4.81 -53.87 -0.26 1.86 16 48 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 49 H 0.08 0.76 7.82 -51.93 -0.41 0.36 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.83 390.42 -8.77 -43.60 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.33 Total: 7.58 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -0.64 Total: 13.12 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.55 Total: -65.24 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.11 Total: -23.24 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.83 -8.77 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201824191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.875 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds