Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.27362 * 2 1 4 4 C 1.53998 * 110.30686 * 237.91444 * 2 1 3 5 5 N 1.47902 * 107.05887 * 242.20567 * 4 2 1 6 6 C 1.46899 * 111.00335 * 214.15415 * 5 4 2 7 7 C 1.50698 * 109.46987 * 169.99982 * 6 5 4 8 8 O 1.21293 * 120.00006 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99773 * 179.72591 * 9 7 6 11 11 H 1.08002 * 119.99671 * 0.27660 * 10 9 7 12 12 C 1.38950 * 120.00030 * 180.27703 * 10 9 7 13 13 N 1.31414 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47459 * 59.99812 * 14 12 10 16 16 H 1.48502 * 109.47317 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47211 * 300.00250 * 14 12 10 18 18 C 1.48532 * 105.82040 * 334.67618 * 5 4 2 19 19 C 1.54592 * 110.39669 * 122.14853 * 2 1 3 20 20 H 1.09004 * 110.72552 * 22.55814 * 19 2 1 21 21 N 1.46499 * 110.72560 * 259.45243 * 19 2 1 22 22 C 1.34777 * 120.00034 * 154.99822 * 21 19 2 23 23 O 1.21286 * 119.99702 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00090 * 180.02562 * 22 21 19 25 25 O 1.42902 * 109.47398 * 179.97438 * 24 22 21 26 26 C 1.42892 * 114.00174 * 179.97438 * 25 24 22 27 27 C 1.53002 * 109.47297 * 180.02562 * 26 25 24 28 28 C 1.53000 * 117.50126 * 243.62739 * 27 26 25 29 29 C 1.53003 * 117.49937 * 174.99998 * 27 26 25 30 30 H 1.09003 * 109.46989 * 180.63212 * 1 2 3 31 31 H 1.09000 * 109.46445 * 300.62893 * 1 2 3 32 32 H 1.08999 * 109.47307 * 60.63015 * 1 2 3 33 33 H 1.09004 * 109.91604 * 122.85656 * 4 2 1 34 34 H 1.08999 * 110.08340 * 1.65389 * 4 2 1 35 35 H 1.09003 * 109.46477 * 50.00472 * 6 5 4 36 36 H 1.08993 * 109.47002 * 290.00798 * 6 5 4 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99863 * 180.02562 * 13 12 10 39 39 H 1.08996 * 110.66766 * 157.64226 * 18 5 4 40 40 H 1.09006 * 110.66183 * 280.76937 * 18 5 4 41 41 H 0.96994 * 119.99956 * 334.99907 * 21 19 2 42 42 H 1.09002 * 109.46894 * 299.99900 * 24 22 21 43 43 H 1.09005 * 109.47247 * 59.99983 * 24 22 21 44 44 H 1.08994 * 109.47901 * 300.00502 * 26 25 24 45 45 H 1.09007 * 109.47175 * 60.00344 * 26 25 24 46 46 H 1.09003 * 115.54667 * 29.33355 * 27 26 25 47 47 H 1.08996 * 117.49876 * 359.97438 * 28 27 26 48 48 H 1.09000 * 117.50246 * 145.02272 * 28 27 26 49 49 H 1.08999 * 117.49788 * 214.97972 * 29 27 26 50 50 H 1.08992 * 117.50083 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2237 5 7 2.8334 -1.9215 -0.7101 6 6 3.9768 -2.2223 -1.5819 7 6 4.8700 -3.2320 -0.9084 8 8 4.5822 -3.6594 0.1896 9 7 5.9882 -3.6609 -1.5267 10 6 6.8039 -4.5752 -0.9115 11 1 6.5479 -4.9552 0.0665 12 6 7.9597 -5.0131 -1.5464 13 7 8.2713 -4.5503 -2.7363 14 14 9.0706 -6.2594 -0.7086 15 1 8.3083 -7.5074 -0.4506 16 1 10.2294 -6.5593 -1.5875 17 1 9.5576 -5.7019 0.5788 18 6 3.2882 -1.5327 0.6493 19 6 2.0688 -0.7710 1.2268 20 1 1.3208 -1.4692 1.6027 21 7 2.4846 0.1574 2.2810 22 6 2.5018 -0.2468 3.5667 23 8 2.1727 -1.3790 3.8508 24 6 2.9290 0.7084 4.6511 25 8 2.8629 0.0510 5.9182 26 6 3.2503 0.8734 7.0206 27 6 3.1421 0.0706 8.3186 28 6 2.1288 0.5469 9.3614 29 6 3.6268 0.7404 9.6061 30 1 -0.3633 -1.0276 0.0113 31 1 -0.3632 0.5236 0.8843 32 1 -0.3634 0.5040 -0.8956 33 1 2.7148 -0.1202 -1.8125 34 1 1.2347 -1.1172 -1.8377 35 1 4.5397 -1.3082 -1.7711 36 1 3.6162 -2.6290 -2.5267 37 1 6.2183 -3.3194 -2.4049 38 1 9.0780 -4.8563 -3.1796 39 1 3.5091 -2.4160 1.2484 40 1 4.1581 -0.8784 0.5914 41 1 2.7474 1.0630 2.0538 42 1 3.9516 1.0363 4.4644 43 1 2.2653 1.5731 4.6558 44 1 4.2798 1.2041 6.8832 45 1 2.5939 1.7420 7.0744 46 1 3.2971 -1.0039 8.2211 47 1 1.5397 1.4323 9.1230 48 1 1.6170 -0.2143 9.9502 49 1 4.1003 0.1064 10.3557 50 1 4.0232 1.7527 9.5283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206196880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -79.701313 kcal Electronic energy + Delta-G solvation = -29333.129711 eV Core-core repulsion = 25168.596912 eV Total energy + Delta-G solvation = -4164.532799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21194 -39.14049 -38.36536 -37.57864 -36.57005 -34.48995 -33.85259 -32.56523 -31.24292 -29.79696 -28.40738 -27.26459 -26.24834 -25.17905 -23.79880 -22.73608 -21.48725 -21.06449 -20.64386 -20.12453 -19.19621 -17.85712 -17.50156 -17.07939 -16.61672 -16.28533 -15.92162 -15.64372 -15.02544 -14.95599 -14.57441 -14.43341 -14.28168 -14.09306 -13.89421 -13.60893 -13.51229 -13.18190 -12.85936 -12.69978 -12.60572 -12.30024 -11.89786 -11.87327 -11.70079 -11.52513 -11.43623 -11.26830 -11.23505 -11.02774 -10.81946 -10.80192 -10.62290 -10.59695 -10.39553 -10.19434 -9.85575 -9.76998 -9.47131 -9.02784 -8.35288 -7.99571 -7.87528 -6.40315 -3.80896 2.57556 2.62468 3.22038 3.27306 3.32494 3.38071 3.70417 3.91169 4.10700 4.32538 4.41137 4.49824 4.52754 4.68047 4.72484 4.75325 4.78775 4.82656 4.90807 4.96350 5.08938 5.12160 5.26364 5.26589 5.29473 5.35899 5.41206 5.50401 5.52969 5.53961 5.71956 5.74207 5.83973 5.86125 5.87381 5.93757 5.97377 6.14900 6.17166 6.27851 6.43905 6.75995 6.79342 7.21438 7.30364 7.43562 7.57173 8.07676 8.21749 8.63381 9.19784 9.55094 10.07400 10.77311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002511 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.452477 B =11149.663392 C =14037.776733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.076 0.924 4 C 0.038 3.962 5 N -0.493 5.493 6 C 0.038 3.962 7 C 0.440 3.560 8 O -0.576 6.576 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.031 3.969 19 C 0.142 3.858 20 H 0.106 0.894 21 N -0.721 5.721 22 C 0.512 3.488 23 O -0.507 6.507 24 C 0.046 3.954 25 O -0.358 6.358 26 C 0.092 3.908 27 C -0.153 4.153 28 C -0.177 4.177 29 C -0.174 4.174 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.124 0.876 40 H 0.037 0.963 41 H 0.397 0.603 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 18.987 11.691 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.091 4.091 5 N -0.217 5.217 6 C -0.094 4.094 7 C 0.225 3.775 8 O -0.461 6.461 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.097 4.097 19 C 0.037 3.963 20 H 0.124 0.876 21 N -0.375 5.375 22 C 0.296 3.704 23 O -0.380 6.380 24 C -0.034 4.034 25 O -0.276 6.276 26 C 0.015 3.985 27 C -0.171 4.171 28 C -0.214 4.214 29 C -0.211 4.211 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.055 0.945 41 H 0.231 0.769 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.135 0.865 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.628 17.125 12.561 24.708 hybrid contribution 1.649 1.169 -0.607 2.111 sum -10.979 18.294 11.953 24.456 Atomic orbital electron populations 1.21815 0.93849 1.02632 1.01434 1.22244 0.96889 0.98939 0.94658 0.90538 1.23030 0.98479 0.91506 0.96088 1.64557 1.20680 1.34412 1.02099 1.22109 0.91709 0.98374 0.97194 1.19733 0.83506 0.86568 0.87657 1.90477 1.73745 1.60683 1.21155 1.41838 1.20141 1.38871 1.19005 1.19664 1.01813 1.18139 1.03157 0.87936 1.25259 0.97969 0.98790 0.95924 1.69606 1.26640 1.44315 1.13828 0.85917 0.78999 0.80558 0.78758 1.19832 1.20995 1.19923 1.23848 0.94146 1.00873 0.90873 1.22124 0.97602 0.90770 0.85781 0.87644 1.45829 1.69643 1.15966 1.06066 1.20188 0.78365 0.88629 0.83172 1.90787 1.45479 1.19607 1.82146 1.22179 1.01850 0.94740 0.84649 1.88035 1.88575 1.38000 1.13001 1.22066 0.98891 0.92393 0.85110 1.22127 1.05167 1.01049 0.88798 1.23074 0.92180 1.03350 1.02814 1.22981 0.97375 1.02010 0.98717 0.91737 0.92762 0.92443 0.93756 0.89972 0.93393 0.89052 0.77488 0.91850 0.85842 0.94457 0.76928 0.90198 0.90464 0.92600 0.93073 0.86461 0.88725 0.88507 0.88297 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.90 37.16 0.33 -0.94 16 2 C -0.11 -1.13 3.32 -89.26 -0.30 -1.43 16 3 H 0.08 0.65 7.75 -51.93 -0.40 0.24 16 4 C 0.04 0.46 6.35 -2.75 -0.02 0.45 16 5 N -0.49 -8.43 5.26 -231.89 -1.22 -9.65 16 6 C 0.04 0.69 5.52 -4.98 -0.03 0.66 16 7 C 0.44 10.58 7.49 -10.99 -0.08 10.49 16 8 O -0.58 -15.85 13.10 5.55 0.07 -15.77 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 14 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.03 0.55 4.99 -1.90 -0.01 0.54 16 19 C 0.14 1.95 2.97 -66.07 -0.20 1.76 16 20 H 0.11 1.70 7.27 -51.93 -0.38 1.32 16 21 N -0.72 -8.15 5.18 -52.01 -0.27 -8.42 16 22 C 0.51 7.06 7.91 -10.99 -0.09 6.98 16 23 O -0.51 -9.81 16.14 -14.36 -0.23 -10.05 16 24 C 0.05 0.46 6.42 36.00 0.23 0.69 16 25 O -0.36 -4.55 9.88 -55.14 -0.54 -5.09 16 26 C 0.09 0.82 6.22 37.16 0.23 1.05 16 27 C -0.15 -1.37 6.06 -90.62 -0.55 -1.92 16 28 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 29 C -0.17 -1.17 10.25 -26.72 -0.27 -1.45 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 34 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 35 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.12 2.82 5.97 -51.93 -0.31 2.51 16 40 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 41 H 0.40 2.98 8.39 -40.82 -0.34 2.63 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.36 7.88 -51.92 -0.41 -0.05 16 46 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -35.58 409.81 -9.99 -45.57 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.36 Total: 12.11 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.26 Total: 7.23 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.82 Total: -56.58 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.70 Total: -30.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.58 -9.99 -45.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206196880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.131 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds