Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.27362 * 2 1 4 4 C 1.53998 * 110.30686 * 237.91444 * 2 1 3 5 5 N 1.47902 * 107.05887 * 242.20567 * 4 2 1 6 6 C 1.46899 * 111.00335 * 214.15415 * 5 4 2 7 7 C 1.50698 * 109.46987 * 169.99982 * 6 5 4 8 8 O 1.21293 * 120.00006 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99773 * 179.72591 * 9 7 6 11 11 H 1.08002 * 119.99671 * 0.27660 * 10 9 7 12 12 C 1.38950 * 120.00030 * 180.27703 * 10 9 7 13 13 N 1.31414 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47459 * 59.99812 * 14 12 10 16 16 H 1.48502 * 109.47317 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47211 * 300.00250 * 14 12 10 18 18 C 1.48532 * 105.82040 * 334.67618 * 5 4 2 19 19 C 1.54592 * 110.39669 * 122.14853 * 2 1 3 20 20 H 1.09004 * 110.72552 * 22.55814 * 19 2 1 21 21 N 1.46499 * 110.72560 * 259.45243 * 19 2 1 22 22 C 1.34777 * 120.00034 * 154.99822 * 21 19 2 23 23 O 1.21286 * 119.99702 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00090 * 180.02562 * 22 21 19 25 25 O 1.42902 * 109.47398 * 179.97438 * 24 22 21 26 26 C 1.42892 * 114.00174 * 179.97438 * 25 24 22 27 27 C 1.53002 * 109.47297 * 180.02562 * 26 25 24 28 28 C 1.53000 * 117.50126 * 243.62739 * 27 26 25 29 29 C 1.53003 * 117.49937 * 174.99998 * 27 26 25 30 30 H 1.09003 * 109.46989 * 180.63212 * 1 2 3 31 31 H 1.09000 * 109.46445 * 300.62893 * 1 2 3 32 32 H 1.08999 * 109.47307 * 60.63015 * 1 2 3 33 33 H 1.09004 * 109.91604 * 122.85656 * 4 2 1 34 34 H 1.08999 * 110.08340 * 1.65389 * 4 2 1 35 35 H 1.09003 * 109.46477 * 50.00472 * 6 5 4 36 36 H 1.08993 * 109.47002 * 290.00798 * 6 5 4 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99863 * 180.02562 * 13 12 10 39 39 H 1.08996 * 110.66766 * 157.64226 * 18 5 4 40 40 H 1.09006 * 110.66183 * 280.76937 * 18 5 4 41 41 H 0.96994 * 119.99956 * 334.99907 * 21 19 2 42 42 H 1.09002 * 109.46894 * 299.99900 * 24 22 21 43 43 H 1.09005 * 109.47247 * 59.99983 * 24 22 21 44 44 H 1.08994 * 109.47901 * 300.00502 * 26 25 24 45 45 H 1.09007 * 109.47175 * 60.00344 * 26 25 24 46 46 H 1.09003 * 115.54667 * 29.33355 * 27 26 25 47 47 H 1.08996 * 117.49876 * 359.97438 * 28 27 26 48 48 H 1.09000 * 117.50246 * 145.02272 * 28 27 26 49 49 H 1.08999 * 117.49788 * 214.97972 * 29 27 26 50 50 H 1.08992 * 117.50083 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2237 5 7 2.8334 -1.9215 -0.7101 6 6 3.9768 -2.2223 -1.5819 7 6 4.8700 -3.2320 -0.9084 8 8 4.5822 -3.6594 0.1896 9 7 5.9882 -3.6609 -1.5267 10 6 6.8039 -4.5752 -0.9115 11 1 6.5479 -4.9552 0.0665 12 6 7.9597 -5.0131 -1.5464 13 7 8.2713 -4.5503 -2.7363 14 14 9.0706 -6.2594 -0.7086 15 1 8.3083 -7.5074 -0.4506 16 1 10.2294 -6.5593 -1.5875 17 1 9.5576 -5.7019 0.5788 18 6 3.2882 -1.5327 0.6493 19 6 2.0688 -0.7710 1.2268 20 1 1.3208 -1.4692 1.6027 21 7 2.4846 0.1574 2.2810 22 6 2.5018 -0.2468 3.5667 23 8 2.1727 -1.3790 3.8508 24 6 2.9290 0.7084 4.6511 25 8 2.8629 0.0510 5.9182 26 6 3.2503 0.8734 7.0206 27 6 3.1421 0.0706 8.3186 28 6 2.1288 0.5469 9.3614 29 6 3.6268 0.7404 9.6061 30 1 -0.3633 -1.0276 0.0113 31 1 -0.3632 0.5236 0.8843 32 1 -0.3634 0.5040 -0.8956 33 1 2.7148 -0.1202 -1.8125 34 1 1.2347 -1.1172 -1.8377 35 1 4.5397 -1.3082 -1.7711 36 1 3.6162 -2.6290 -2.5267 37 1 6.2183 -3.3194 -2.4049 38 1 9.0780 -4.8563 -3.1796 39 1 3.5091 -2.4160 1.2484 40 1 4.1581 -0.8784 0.5914 41 1 2.7474 1.0630 2.0538 42 1 3.9516 1.0363 4.4644 43 1 2.2653 1.5731 4.6558 44 1 4.2798 1.2041 6.8832 45 1 2.5939 1.7420 7.0744 46 1 3.2971 -1.0039 8.2211 47 1 1.5397 1.4323 9.1230 48 1 1.6170 -0.2143 9.9502 49 1 4.1003 0.1064 10.3557 50 1 4.0232 1.7527 9.5283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206196880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = -107.571667 kcal Electronic energy + Delta-G solvation = -29334.338261 eV Core-core repulsion = 25168.596912 eV Total energy + Delta-G solvation = -4165.741349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37398 -40.47732 -39.45325 -38.90359 -37.32227 -36.12455 -35.49341 -33.69230 -33.29205 -30.80421 -29.55494 -28.45616 -27.08067 -26.77625 -25.19509 -23.27227 -22.74707 -21.88024 -21.64773 -21.13711 -21.00108 -19.89750 -18.42311 -18.07074 -17.75790 -17.40625 -17.18151 -16.63623 -16.47235 -16.29253 -16.08277 -15.78295 -15.51408 -15.27176 -15.05701 -14.80016 -14.56423 -14.49256 -14.15688 -13.71399 -13.53880 -13.48091 -13.41786 -13.15369 -12.99741 -12.86296 -12.49461 -12.46385 -12.40201 -12.20633 -12.15258 -12.08148 -11.84683 -11.67703 -11.49954 -11.40960 -11.28305 -10.90279 -10.53111 -10.30216 -10.08812 -9.98887 -9.32446 -8.49489 -5.98020 1.36514 1.38481 1.49461 1.52740 1.72817 2.01454 2.26481 2.68956 2.88228 3.03308 3.16964 3.34070 3.55393 3.67011 3.75164 3.89363 3.95077 3.95506 4.10978 4.17286 4.19934 4.25975 4.27167 4.32646 4.36719 4.45881 4.49789 4.53378 4.58473 4.69353 4.71000 4.75820 4.87328 4.97420 4.99325 5.07649 5.10011 5.19643 5.22618 5.22993 5.35447 5.38128 5.47936 5.82685 5.94564 6.08470 6.11992 6.53595 6.58442 7.10520 7.23529 7.52453 8.10114 8.67605 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002511 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.452477 B =11149.663392 C =14037.776733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.112 0.888 4 C 0.036 3.964 5 N -0.516 5.516 6 C 0.051 3.949 7 C 0.434 3.566 8 O -0.618 6.618 9 N -0.570 5.570 10 C -0.334 4.334 11 H 0.074 0.926 12 C -0.011 4.011 13 N -0.917 5.917 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.273 1.273 18 C 0.036 3.964 19 C 0.150 3.850 20 H 0.073 0.927 21 N -0.702 5.702 22 C 0.503 3.497 23 O -0.577 6.577 24 C 0.050 3.950 25 O -0.401 6.401 26 C 0.091 3.909 27 C -0.182 4.182 28 C -0.176 4.176 29 C -0.158 4.158 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.397 0.603 38 H 0.279 0.721 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.420 0.580 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 22.541 10.880 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.130 0.870 4 C -0.091 4.091 5 N -0.242 5.242 6 C -0.081 4.081 7 C 0.221 3.779 8 O -0.504 6.504 9 N -0.208 5.208 10 C -0.464 4.464 11 H 0.092 0.908 12 C -0.211 4.211 13 N -0.558 5.558 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.190 1.190 17 H -0.199 1.199 18 C -0.093 4.093 19 C 0.044 3.956 20 H 0.091 0.909 21 N -0.356 5.356 22 C 0.290 3.710 23 O -0.455 6.455 24 C -0.029 4.029 25 O -0.321 6.321 26 C 0.015 3.985 27 C -0.201 4.201 28 C -0.213 4.213 29 C -0.195 4.195 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.259 0.741 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.113 0.887 49 H 0.120 0.880 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.819 20.757 11.704 27.058 hybrid contribution 1.675 0.050 -0.339 1.709 sum -11.145 20.807 11.365 26.197 Atomic orbital electron populations 1.21795 0.92531 1.01964 1.03067 1.22238 0.97824 0.99748 0.91372 0.86958 1.23194 0.98514 0.90332 0.97085 1.64467 1.20343 1.37631 1.01711 1.22010 0.91364 0.97489 0.97189 1.20874 0.83283 0.86595 0.87128 1.90495 1.74594 1.62160 1.23171 1.41892 1.20679 1.38978 1.19241 1.19571 1.03621 1.20247 1.02931 0.90819 1.26003 0.98535 1.00056 0.96485 1.69656 1.27111 1.44717 1.14333 0.85028 0.77501 0.78015 0.78018 1.19953 1.19031 1.19864 1.23507 0.95963 0.98657 0.91141 1.21825 0.95060 0.91252 0.87512 0.90878 1.45647 1.68463 1.16554 1.04980 1.21118 0.76947 0.88383 0.84536 1.90760 1.48728 1.22748 1.83269 1.22328 1.04144 0.94080 0.82372 1.87993 1.89144 1.40331 1.14609 1.22236 1.00095 0.92435 0.83696 1.22155 1.07750 0.99946 0.90231 1.23170 0.92701 1.03645 1.01772 1.23076 0.96917 1.02615 0.96878 0.93632 0.91982 0.89924 0.91426 0.88663 0.90725 0.86850 0.76881 0.91193 0.92165 0.94649 0.74135 0.87615 0.86159 0.91397 0.90686 0.89337 0.87389 0.88698 0.87974 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.90 71.98 0.64 -1.45 16 2 C -0.09 -1.67 3.32 -9.91 -0.03 -1.70 16 3 H 0.11 1.30 7.75 -2.38 -0.02 1.28 16 4 C 0.04 0.79 6.35 86.45 0.55 1.34 16 5 N -0.52 -17.51 5.26 -887.57 -4.67 -22.18 16 6 C 0.05 1.81 5.52 85.56 0.47 2.28 16 7 C 0.43 21.60 7.49 87.66 0.66 22.25 16 8 O -0.62 -36.26 13.10 -3.07 -0.04 -36.30 16 9 N -0.57 -30.19 5.29 -306.98 -1.62 -31.81 16 10 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 11 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 13 N -0.92 -50.11 13.05 21.66 0.28 -49.82 16 14 Si 0.99 44.28 29.55 68.60 2.03 46.30 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 C 0.04 1.34 4.99 86.65 0.43 1.78 16 19 C 0.15 4.13 2.97 46.19 0.14 4.26 16 20 H 0.07 2.52 7.27 -2.38 -0.02 2.50 16 21 N -0.70 -15.18 5.18 -436.84 -2.26 -17.45 16 22 C 0.50 14.10 7.91 87.66 0.69 14.79 16 23 O -0.58 -24.08 16.14 15.99 0.26 -23.82 16 24 C 0.05 0.91 6.42 71.23 0.46 1.37 16 25 O -0.40 -10.25 9.88 -129.94 -1.28 -11.53 16 26 C 0.09 1.52 6.22 71.98 0.45 1.97 16 27 C -0.18 -3.31 6.06 -10.79 -0.07 -3.37 16 28 C -0.18 -2.43 10.18 30.60 0.31 -2.12 16 29 C -0.16 -1.94 10.25 30.60 0.31 -1.62 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.21 7.57 -2.38 -0.02 1.19 16 34 H 0.10 1.86 7.69 -2.39 -0.02 1.85 16 35 H 0.07 2.28 7.81 -2.39 -0.02 2.26 16 36 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 38 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.06 3.01 5.97 -2.39 -0.01 3.00 16 40 H 0.04 1.27 8.02 -2.38 -0.02 1.25 16 41 H 0.42 5.00 8.39 -92.71 -0.78 4.22 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.86 7.88 -2.38 -0.02 0.84 16 46 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.11 1.18 8.03 -2.39 -0.02 1.16 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -85.88 409.81 -1.57 -87.46 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.56 Total: 38.32 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.29 Total: 20.84 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -8.27 Total: -121.26 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -1.07 Total: -71.65 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -85.88 -1.57 -87.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206196880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.115 kcal (2) G-P(sol) polarization free energy of solvation -85.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds