Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.64441 * 2 1 4 4 C 1.54937 * 110.72242 * 236.64857 * 2 1 3 5 5 N 1.48530 * 103.22610 * 204.22877 * 4 2 1 6 6 C 1.46906 * 110.99884 * 159.72608 * 5 4 2 7 7 C 1.50692 * 109.47142 * 59.24280 * 6 5 4 8 8 O 1.21293 * 120.00556 * 6.13526 * 7 6 5 9 9 N 1.34776 * 119.99831 * 186.13508 * 7 6 5 10 10 C 1.37101 * 120.00231 * 179.72332 * 9 7 6 11 11 H 1.08005 * 119.99897 * 0.27309 * 10 9 7 12 12 C 1.38949 * 120.00349 * 180.27930 * 10 9 7 13 13 N 1.31411 * 120.00101 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99852 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47388 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47245 * 120.00035 * 14 12 10 17 17 H 1.48509 * 109.46961 * 239.99564 * 14 12 10 18 18 C 1.47901 * 105.82267 * 39.21229 * 5 4 2 19 19 C 1.53994 * 107.05483 * 334.66664 * 18 5 4 20 20 H 1.09004 * 110.30690 * 120.14206 * 19 18 5 21 21 N 1.46499 * 110.31123 * 242.31021 * 19 18 5 22 22 C 1.34782 * 119.99776 * 273.54825 * 21 19 18 23 23 O 1.21363 * 120.00040 * 359.97438 * 22 21 19 24 24 C 1.49090 * 119.99624 * 179.97438 * 22 21 19 25 25 O 1.20774 * 120.00355 * 359.97438 * 24 22 21 26 26 C 1.50705 * 119.99696 * 179.97438 * 24 22 21 27 27 C 1.52997 * 109.46930 * 179.97438 * 26 24 22 28 28 C 1.52996 * 109.47293 * 300.00304 * 26 24 22 29 29 C 1.53001 * 109.46883 * 59.99882 * 26 24 22 30 30 H 1.09002 * 109.47191 * 296.84853 * 1 2 3 31 31 H 1.09001 * 109.47001 * 56.85004 * 1 2 3 32 32 H 1.09005 * 109.47370 * 176.85044 * 1 2 3 33 33 H 1.09006 * 110.66235 * 85.79695 * 4 2 1 34 34 H 1.08998 * 110.67010 * 322.66853 * 4 2 1 35 35 H 1.09000 * 109.46979 * 299.23726 * 6 5 4 36 36 H 1.09002 * 109.46915 * 179.24352 * 6 5 4 37 37 H 0.97005 * 120.00053 * 0.02562 * 9 7 6 38 38 H 0.96999 * 120.00176 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.91784 * 94.01791 * 18 5 4 40 40 H 1.09000 * 109.91704 * 215.11993 * 18 5 4 41 41 H 0.97001 * 120.00487 * 93.54620 * 21 19 18 42 42 H 1.08996 * 109.47099 * 60.00624 * 27 26 24 43 43 H 1.08999 * 109.46870 * 179.97438 * 27 26 24 44 44 H 1.09002 * 109.47059 * 299.99606 * 27 26 24 45 45 H 1.09000 * 109.47287 * 59.99673 * 28 26 24 46 46 H 1.08999 * 109.47415 * 180.02562 * 28 26 24 47 47 H 1.09007 * 109.46666 * 299.99684 * 28 26 24 48 48 H 1.09006 * 109.47309 * 60.00420 * 29 26 24 49 49 H 1.08997 * 109.47237 * 179.97438 * 29 26 24 50 50 H 1.09000 * 109.47237 * 300.00045 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0783 -0.7967 -1.2105 5 7 3.4317 -1.2106 -0.7600 6 6 3.9211 -2.3525 -1.5440 7 6 3.9749 -1.9749 -3.0018 8 8 3.7462 -0.8331 -3.3415 9 7 4.2772 -2.9058 -3.9284 10 6 4.3207 -2.5635 -5.2553 11 1 4.1169 -1.5469 -5.5577 12 6 4.6266 -3.5245 -6.2110 13 7 4.8749 -4.7614 -5.8431 14 14 4.6864 -3.0579 -8.0188 15 1 4.3716 -1.6145 -8.1682 16 1 6.0450 -3.3268 -8.5548 17 1 3.6897 -3.8619 -8.7708 18 6 3.2893 -1.5699 0.6676 19 6 2.0771 -0.7907 1.2106 20 1 1.3207 -1.4807 1.5849 21 7 2.4971 0.1289 2.2708 22 6 2.5787 -0.3035 3.5447 23 8 2.3039 -1.4546 3.8136 24 6 3.0067 0.6323 4.6236 25 8 3.2807 1.7777 4.3559 26 6 3.0974 0.1489 6.0481 27 6 3.5568 1.2977 6.9481 28 6 1.7236 -0.3424 6.5085 29 6 4.1048 -0.9995 6.1337 30 1 -0.3634 0.4641 0.9169 31 1 -0.3633 0.5620 -0.8604 32 1 -0.3634 -1.0261 -0.0565 33 1 2.1444 -0.1593 -2.0923 34 1 1.4560 -1.6689 -1.4107 35 1 3.2471 -3.1990 -1.4125 36 1 4.9194 -2.6265 -1.2025 37 1 4.4598 -3.8190 -3.6568 38 1 5.0888 -5.4323 -6.5103 39 1 3.1160 -2.6415 0.7653 40 1 4.1900 -1.2883 1.2130 41 1 2.7164 1.0491 2.0560 42 1 2.8394 2.1161 6.8872 43 1 3.6220 0.9483 7.9785 44 1 4.5357 1.6473 6.6200 45 1 1.3968 -1.1610 5.8671 46 1 1.7891 -0.6916 7.5389 47 1 1.0060 0.4758 6.4474 48 1 5.0836 -0.6495 5.8058 49 1 4.1708 -1.3488 7.1641 50 1 3.7780 -1.8181 5.4924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206670223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -128.066683 kcal Electronic energy + Delta-G solvation = -30004.770872 eV Core-core repulsion = 25838.140793 eV Total energy + Delta-G solvation = -4166.630079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08501 -40.91777 -39.91467 -39.02078 -37.01922 -36.06018 -35.37636 -33.78517 -33.22880 -30.40638 -28.81393 -28.23431 -28.22530 -27.08893 -26.72759 -25.28826 -23.01955 -21.91480 -21.57552 -21.02576 -20.00895 -19.86062 -18.54423 -18.09329 -17.67008 -16.95459 -16.76702 -16.64664 -16.34368 -16.23614 -15.93997 -15.60839 -15.32640 -15.26015 -14.77911 -14.59770 -14.24915 -14.20508 -13.95750 -13.70032 -13.54100 -13.42293 -13.41814 -13.07981 -13.05996 -13.04049 -12.92799 -12.67483 -12.58808 -12.53855 -12.41267 -12.31064 -12.12164 -11.93108 -11.85004 -11.78289 -11.71328 -11.46657 -10.43222 -10.36367 -10.20089 -10.01803 -9.39101 -8.47581 -5.96158 -0.13665 1.35717 1.41255 1.55365 1.60064 1.86722 2.02702 2.27419 2.75184 3.03043 3.19009 3.28873 3.43956 3.51574 3.58314 3.85163 3.88763 3.97910 4.13862 4.21651 4.28293 4.29485 4.40374 4.47731 4.49989 4.61092 4.68207 4.72214 4.73735 4.76948 4.86173 4.89082 4.93455 4.94082 4.97893 5.02489 5.16786 5.21184 5.23088 5.28998 5.33876 5.40489 5.42104 5.73949 5.80243 5.88655 6.05224 6.29106 6.58957 6.84102 7.11795 7.54487 8.09764 8.70112 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.002028 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.006493 B =13803.070703 C =14197.398308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.092 0.908 4 C 0.045 3.955 5 N -0.510 5.510 6 C 0.047 3.953 7 C 0.442 3.558 8 O -0.612 6.612 9 N -0.574 5.574 10 C -0.330 4.330 11 H 0.080 0.920 12 C -0.015 4.015 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.028 3.972 19 C 0.146 3.854 20 H 0.105 0.895 21 N -0.688 5.688 22 C 0.474 3.526 23 O -0.519 6.519 24 C 0.364 3.636 25 O -0.433 6.433 26 C -0.095 4.095 27 C -0.134 4.134 28 C -0.140 4.140 29 C -0.142 4.142 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.415 0.585 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 6.468 26.035 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.083 4.083 5 N -0.234 5.234 6 C -0.084 4.084 7 C 0.229 3.771 8 O -0.498 6.498 9 N -0.211 5.211 10 C -0.459 4.459 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.101 4.101 19 C 0.041 3.959 20 H 0.123 0.877 21 N -0.342 5.342 22 C 0.257 3.743 23 O -0.396 6.396 24 C 0.234 3.766 25 O -0.302 6.302 26 C -0.096 4.096 27 C -0.191 4.191 28 C -0.197 4.197 29 C -0.199 4.199 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.109 0.891 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.614 7.278 25.669 27.488 hybrid contribution 0.002 -0.767 -1.283 1.495 sum -6.612 6.511 24.385 26.091 Atomic orbital electron populations 1.21750 0.92192 1.02701 1.02902 1.22327 0.97229 0.99662 0.91777 0.88996 1.23278 0.87783 0.98747 0.98445 1.64512 1.24749 1.32382 1.01764 1.21976 1.02977 0.92988 0.90485 1.20614 0.82513 0.85656 0.88297 1.90468 1.55368 1.21375 1.82624 1.41941 1.61769 1.11309 1.06076 1.19691 1.46532 0.96868 0.82852 0.90197 1.26055 0.96238 0.94710 1.04427 1.69681 1.47517 1.02421 1.36577 0.84862 0.78276 0.78263 0.76885 1.19726 1.19704 1.19607 1.23348 0.98967 0.99210 0.88568 1.21937 0.95585 0.91594 0.86767 0.87712 1.46099 1.66115 1.15652 1.06296 1.21194 0.79382 0.89196 0.84479 1.90719 1.47577 1.18652 1.82640 1.25228 0.72046 0.86869 0.92438 1.90422 1.34303 1.20351 1.85172 1.21052 0.99900 0.98785 0.89882 1.21789 1.01455 0.96202 0.99660 1.21896 0.92783 1.01693 1.03357 1.21909 0.96970 0.96490 1.04549 0.90967 0.91671 0.92108 0.90709 0.94045 0.91288 0.87511 0.77083 0.91323 0.92131 0.90143 0.74763 0.92316 0.89337 0.92601 0.91564 0.89210 0.92258 0.92615 0.89147 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.16 71.98 0.66 -1.86 16 2 C -0.09 -2.05 3.37 -9.59 -0.03 -2.08 16 3 H 0.09 2.05 7.74 -2.39 -0.02 2.03 16 4 C 0.05 1.43 5.03 86.65 0.44 1.87 16 5 N -0.51 -16.67 5.11 -887.57 -4.54 -21.20 16 6 C 0.05 1.68 5.30 85.55 0.45 2.13 16 7 C 0.44 21.08 7.41 87.65 0.65 21.73 16 8 O -0.61 -33.43 13.87 -3.07 -0.04 -33.48 16 9 N -0.57 -29.55 5.29 -306.99 -1.62 -31.17 16 10 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 13 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 14 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 18 C 0.03 0.71 6.49 86.45 0.56 1.27 16 19 C 0.15 3.17 2.87 45.87 0.13 3.30 16 20 H 0.10 2.24 7.35 -2.38 -0.02 2.22 16 21 N -0.69 -13.57 5.02 -440.07 -2.21 -15.78 16 22 C 0.47 9.68 7.54 87.16 0.66 10.34 16 23 O -0.52 -12.18 13.09 -3.29 -0.04 -12.22 16 24 C 0.36 6.67 6.03 28.61 0.17 6.84 16 25 O -0.43 -9.22 16.09 -1.49 -0.02 -9.24 16 26 C -0.09 -1.31 0.76 -52.93 -0.04 -1.35 16 27 C -0.13 -1.54 7.76 71.98 0.56 -0.98 16 28 C -0.14 -1.66 8.29 71.98 0.60 -1.06 16 29 C -0.14 -1.85 8.29 71.98 0.60 -1.25 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 33 H 0.07 2.94 6.43 -2.38 -0.02 2.92 16 34 H 0.04 1.29 7.88 -2.39 -0.02 1.27 16 35 H 0.07 2.19 7.98 -2.39 -0.02 2.17 16 36 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 38 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 40 H 0.08 2.07 7.93 -2.39 -0.02 2.06 16 41 H 0.42 7.56 7.81 -92.71 -0.72 6.84 16 42 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.05 0.72 8.10 -2.39 -0.02 0.71 16 45 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 1.08 6.43 -2.39 -0.02 1.07 16 Total: -1.00 -67.82 402.34 0.02 -67.80 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.50 Total: 39.14 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.68 Total: 20.68 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -8.09 Total: -117.71 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -0.11 Total: -54.94 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -67.82 0.02 -67.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206670223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.263 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds