Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.64611 * 2 1 4 4 C 1.54937 * 110.72841 * 236.84583 * 2 1 3 5 5 N 1.48529 * 103.22994 * 204.22737 * 4 2 1 6 6 C 1.46902 * 110.99964 * 159.71596 * 5 4 2 7 7 C 1.50702 * 109.47183 * 190.00024 * 6 5 4 8 8 O 1.21296 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00556 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99325 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00485 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99392 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46981 * 90.00363 * 14 12 10 16 16 H 1.48494 * 109.47054 * 210.00222 * 14 12 10 17 17 H 1.48498 * 109.47031 * 330.00363 * 14 12 10 18 18 C 1.47906 * 105.81771 * 39.20728 * 5 4 2 19 19 C 1.53994 * 107.06107 * 334.66596 * 18 5 4 20 20 H 1.09000 * 110.30870 * 120.14358 * 19 18 5 21 21 N 1.46495 * 110.30987 * 242.31610 * 19 18 5 22 22 C 1.34779 * 119.99429 * 270.71058 * 21 19 18 23 23 O 1.21280 * 120.00350 * 0.02562 * 22 21 19 24 24 C 1.50705 * 119.99709 * 180.02562 * 22 21 19 25 25 H 1.08996 * 109.48270 * 54.99724 * 24 22 21 26 26 C 1.53096 * 109.47794 * 294.97596 * 24 22 21 27 27 C 1.53183 * 109.16179 * 182.42044 * 26 24 22 28 28 C 1.53179 * 109.04306 * 56.96542 * 27 26 24 29 29 C 1.53095 * 109.16250 * 303.02546 * 28 27 26 30 30 O 1.42900 * 109.41648 * 57.61062 * 29 28 27 31 31 H 1.09002 * 109.47153 * 181.70023 * 1 2 3 32 32 H 1.09001 * 109.46832 * 61.70214 * 1 2 3 33 33 H 1.09004 * 109.47261 * 301.70195 * 1 2 3 34 34 H 1.09004 * 110.66275 * 322.66410 * 4 2 1 35 35 H 1.08999 * 110.66909 * 85.62100 * 4 2 1 36 36 H 1.09000 * 109.47391 * 310.00144 * 6 5 4 37 37 H 1.08994 * 109.47006 * 70.00334 * 6 5 4 38 38 H 0.96998 * 119.99327 * 0.02562 * 9 7 6 39 39 H 0.97005 * 119.99279 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.92147 * 94.02483 * 18 5 4 41 41 H 1.09003 * 109.91555 * 215.31615 * 18 5 4 42 42 H 0.96997 * 120.00576 * 90.71732 * 21 19 18 43 43 H 1.08999 * 109.52566 * 302.31307 * 26 24 22 44 44 H 1.08998 * 109.52300 * 62.50676 * 26 24 22 45 45 H 1.09002 * 109.53435 * 297.10410 * 27 26 24 46 46 H 1.08994 * 109.54727 * 176.83797 * 27 26 24 47 47 H 1.09005 * 109.51801 * 183.12149 * 28 27 26 48 48 H 1.08993 * 109.52325 * 62.93144 * 28 27 26 49 49 H 1.09006 * 109.48167 * 297.62365 * 29 28 27 50 50 H 1.09003 * 109.47859 * 177.59899 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0784 -0.7925 -1.2132 5 7 3.4318 -1.2079 -0.7641 6 6 3.9212 -2.3472 -1.5518 7 6 5.1738 -2.8951 -0.9179 8 8 5.6152 -2.3869 0.0911 9 7 5.8037 -3.9499 -1.4721 10 6 6.9429 -4.4488 -0.8952 11 1 7.3354 -3.9967 0.0037 12 6 7.5920 -5.5366 -1.4662 13 7 7.1140 -6.0869 -2.5597 14 14 9.1446 -6.2157 -0.6805 15 1 8.7820 -7.2657 0.3051 16 1 10.0151 -6.8022 -1.7309 17 1 9.8708 -5.1192 0.0090 18 6 3.2893 -1.5720 0.6623 19 6 2.0770 -0.7947 1.2080 20 1 1.3207 -1.4859 1.5799 21 7 2.4971 0.1214 2.2712 22 6 2.5239 -0.2992 3.5514 23 8 2.2007 -1.4362 3.8231 24 6 2.9554 0.6433 4.6453 25 1 2.3459 1.5462 4.6086 26 6 4.4280 1.0131 4.4490 27 6 4.8755 1.9225 5.5976 28 6 4.6284 1.2052 6.9283 29 6 3.1480 0.8281 7.0286 30 8 2.7901 0.0079 5.9145 31 1 -0.3633 -1.0272 0.0305 32 1 -0.3633 0.4872 -0.9049 33 1 -0.3634 0.5401 0.8744 34 1 1.4561 -1.6641 -1.4164 35 1 2.1417 -0.1530 -2.0936 36 1 3.1578 -3.1247 -1.5792 37 1 4.1418 -2.0187 -2.5674 38 1 5.4509 -4.3561 -2.2792 39 1 7.5674 -6.8460 -2.9586 40 1 3.1161 -2.6440 0.7565 41 1 4.1886 -1.2890 1.2094 42 1 2.7558 1.0306 2.0539 43 1 5.0338 0.1070 4.4449 44 1 4.5487 1.5374 3.5010 45 1 4.3039 2.8502 5.5719 46 1 5.9377 2.1442 5.4947 47 1 4.8925 1.8669 7.7533 48 1 5.2380 0.3028 6.9744 49 1 2.5411 1.7336 7.0233 50 1 2.9746 0.2796 7.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206875592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -116.529473 kcal Electronic energy + Delta-G solvation = -30506.178949 eV Core-core repulsion = 26340.049161 eV Total energy + Delta-G solvation = -4166.129788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51766 -39.49552 -38.35843 -37.46411 -34.54658 -33.98010 -33.69937 -32.65106 -31.57832 -31.22902 -28.83259 -27.37944 -25.89616 -25.13333 -24.16905 -23.70790 -21.50956 -20.72705 -20.61085 -20.05043 -19.05795 -17.79902 -17.52876 -17.03491 -16.10146 -15.98280 -15.78103 -15.34046 -15.09094 -14.80089 -14.59492 -14.48015 -14.41066 -14.08125 -13.82684 -13.58549 -13.23925 -13.08146 -12.96018 -12.90092 -12.55915 -12.15557 -12.01420 -11.82718 -11.73929 -11.52309 -11.50351 -11.33452 -11.32527 -11.22884 -11.04507 -10.79165 -10.74102 -10.71228 -10.36640 -10.19984 -9.80087 -9.56297 -9.48329 -9.00292 -8.38500 -7.98599 -7.90743 -6.40100 -3.80665 2.61709 2.76815 3.19616 3.28054 3.33988 3.84737 3.91954 4.07979 4.26633 4.38567 4.47189 4.53413 4.53877 4.66500 4.71479 4.79531 4.87828 4.94969 5.06613 5.12281 5.26738 5.27242 5.32819 5.39282 5.40916 5.49540 5.51031 5.56440 5.63622 5.70522 5.75803 5.78634 5.80184 5.81261 5.92078 5.96045 6.02150 6.09086 6.14651 6.29475 6.44386 6.74601 6.88252 7.19891 7.26366 7.50394 7.57108 8.07607 8.25173 8.63110 9.19692 9.55569 10.07194 10.77712 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.003050 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.007816 B = 9176.756894 C =11484.555422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.036 3.964 5 N -0.495 5.495 6 C 0.035 3.965 7 C 0.441 3.559 8 O -0.580 6.580 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.042 3.958 19 C 0.135 3.865 20 H 0.094 0.906 21 N -0.714 5.714 22 C 0.519 3.481 23 O -0.516 6.516 24 C 0.078 3.922 25 H 0.080 0.920 26 C -0.148 4.148 27 C -0.120 4.120 28 C -0.160 4.160 29 C 0.060 3.940 30 O -0.354 6.354 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.399 0.601 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 18.111 9.486 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.096 4.096 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.199 5.199 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.087 4.087 19 C 0.030 3.970 20 H 0.112 0.888 21 N -0.367 5.367 22 C 0.304 3.696 23 O -0.390 6.390 24 C 0.016 3.984 25 H 0.098 0.902 26 C -0.186 4.186 27 C -0.157 4.157 28 C -0.198 4.198 29 C -0.017 4.017 30 O -0.272 6.272 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.234 0.766 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.802 17.648 10.215 23.560 hybrid contribution 0.333 -0.707 -0.324 0.847 sum -11.469 16.940 9.891 22.723 Atomic orbital electron populations 1.21780 0.94115 1.02233 1.01878 1.22327 0.95633 0.99951 0.93964 0.89369 1.23351 0.89767 0.98619 0.97487 1.64633 1.21221 1.33448 1.02609 1.22116 0.96766 0.92276 0.98482 1.19730 0.86956 0.83469 0.87193 1.90499 1.68129 1.61290 1.26520 1.41843 1.24401 1.27482 1.26168 1.19695 1.01264 1.11837 1.09945 0.87942 1.25257 0.99706 0.96801 0.96163 1.69618 1.40930 1.23978 1.19823 0.85862 0.80889 0.79115 0.78464 1.20397 1.20919 1.19408 1.23314 0.98279 0.97875 0.89220 1.22090 0.96921 0.91601 0.86399 0.88837 1.45883 1.69027 1.15970 1.05835 1.20130 0.77880 0.88373 0.83227 1.90742 1.46344 1.19272 1.82613 1.21867 0.96929 0.94630 0.84968 0.90188 1.22167 0.95022 1.01668 0.99765 1.21580 1.02165 0.97970 0.94015 1.22234 0.97801 1.01664 0.98078 1.22652 0.94288 0.95186 0.89539 1.88079 1.86728 1.39989 1.12402 0.92386 0.92131 0.92450 0.93527 0.89768 0.93248 0.89075 0.77478 0.91886 0.93545 0.87520 0.76598 0.89863 0.89983 0.91673 0.90804 0.90727 0.90626 0.93160 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.16 37.16 0.34 -0.87 16 2 C -0.10 -1.03 3.36 -88.76 -0.30 -1.33 16 3 H 0.09 0.82 7.76 -51.93 -0.40 0.42 16 4 C 0.04 0.44 6.00 -1.90 -0.01 0.43 16 5 N -0.49 -8.21 5.26 -231.89 -1.22 -9.43 16 6 C 0.04 0.64 5.48 -4.97 -0.03 0.62 16 7 C 0.44 10.58 7.36 -10.99 -0.08 10.50 16 8 O -0.58 -15.70 13.37 5.54 0.07 -15.63 16 9 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 11 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 14 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.04 0.74 4.86 -2.75 -0.01 0.73 16 19 C 0.14 1.83 2.92 -66.57 -0.19 1.64 16 20 H 0.09 1.39 7.24 -51.93 -0.38 1.01 16 21 N -0.71 -8.58 4.97 -52.49 -0.26 -8.84 16 22 C 0.52 7.52 7.18 -10.98 -0.08 7.44 16 23 O -0.52 -10.03 16.16 -14.30 -0.23 -10.27 16 24 C 0.08 0.87 3.05 -27.83 -0.09 0.79 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -1.49 5.37 -26.59 -0.14 -1.63 16 27 C -0.12 -0.93 6.03 -26.54 -0.16 -1.09 16 28 C -0.16 -1.27 6.14 -26.59 -0.16 -1.43 16 29 C 0.06 0.53 6.84 37.21 0.25 0.79 16 30 O -0.35 -4.69 9.94 -55.09 -0.55 -5.24 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.55 7.76 -51.93 -0.40 0.14 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.05 0.94 7.59 -51.93 -0.39 0.54 16 41 H 0.11 2.25 6.53 -51.93 -0.34 1.91 16 42 H 0.40 3.56 8.23 -40.82 -0.34 3.23 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.08 0.70 7.99 -51.93 -0.41 0.28 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -35.15 398.02 -9.85 -45.00 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.40 Total: 12.22 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.90 Total: 8.49 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.82 Total: -57.01 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.70 Total: -31.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.15 -9.85 -45.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.527 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds