Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.64611 * 2 1 4 4 C 1.54937 * 110.72841 * 236.84583 * 2 1 3 5 5 N 1.48529 * 103.22994 * 204.22737 * 4 2 1 6 6 C 1.46902 * 110.99964 * 159.71596 * 5 4 2 7 7 C 1.50702 * 109.47183 * 190.00024 * 6 5 4 8 8 O 1.21296 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00556 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99325 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00485 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99392 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46981 * 90.00363 * 14 12 10 16 16 H 1.48494 * 109.47054 * 210.00222 * 14 12 10 17 17 H 1.48498 * 109.47031 * 330.00363 * 14 12 10 18 18 C 1.47906 * 105.81771 * 39.20728 * 5 4 2 19 19 C 1.53994 * 107.06107 * 334.66596 * 18 5 4 20 20 H 1.09000 * 110.30870 * 120.14358 * 19 18 5 21 21 N 1.46495 * 110.30987 * 242.31610 * 19 18 5 22 22 C 1.34779 * 119.99429 * 270.71058 * 21 19 18 23 23 O 1.21280 * 120.00350 * 0.02562 * 22 21 19 24 24 C 1.50705 * 119.99709 * 180.02562 * 22 21 19 25 25 H 1.08996 * 109.48270 * 54.99724 * 24 22 21 26 26 C 1.53096 * 109.47794 * 294.97596 * 24 22 21 27 27 C 1.53183 * 109.16179 * 182.42044 * 26 24 22 28 28 C 1.53179 * 109.04306 * 56.96542 * 27 26 24 29 29 C 1.53095 * 109.16250 * 303.02546 * 28 27 26 30 30 O 1.42900 * 109.41648 * 57.61062 * 29 28 27 31 31 H 1.09002 * 109.47153 * 181.70023 * 1 2 3 32 32 H 1.09001 * 109.46832 * 61.70214 * 1 2 3 33 33 H 1.09004 * 109.47261 * 301.70195 * 1 2 3 34 34 H 1.09004 * 110.66275 * 322.66410 * 4 2 1 35 35 H 1.08999 * 110.66909 * 85.62100 * 4 2 1 36 36 H 1.09000 * 109.47391 * 310.00144 * 6 5 4 37 37 H 1.08994 * 109.47006 * 70.00334 * 6 5 4 38 38 H 0.96998 * 119.99327 * 0.02562 * 9 7 6 39 39 H 0.97005 * 119.99279 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.92147 * 94.02483 * 18 5 4 41 41 H 1.09003 * 109.91555 * 215.31615 * 18 5 4 42 42 H 0.96997 * 120.00576 * 90.71732 * 21 19 18 43 43 H 1.08999 * 109.52566 * 302.31307 * 26 24 22 44 44 H 1.08998 * 109.52300 * 62.50676 * 26 24 22 45 45 H 1.09002 * 109.53435 * 297.10410 * 27 26 24 46 46 H 1.08994 * 109.54727 * 176.83797 * 27 26 24 47 47 H 1.09005 * 109.51801 * 183.12149 * 28 27 26 48 48 H 1.08993 * 109.52325 * 62.93144 * 28 27 26 49 49 H 1.09006 * 109.48167 * 297.62365 * 29 28 27 50 50 H 1.09003 * 109.47859 * 177.59899 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0784 -0.7925 -1.2132 5 7 3.4318 -1.2079 -0.7641 6 6 3.9212 -2.3472 -1.5518 7 6 5.1738 -2.8951 -0.9179 8 8 5.6152 -2.3869 0.0911 9 7 5.8037 -3.9499 -1.4721 10 6 6.9429 -4.4488 -0.8952 11 1 7.3354 -3.9967 0.0037 12 6 7.5920 -5.5366 -1.4662 13 7 7.1140 -6.0869 -2.5597 14 14 9.1446 -6.2157 -0.6805 15 1 8.7820 -7.2657 0.3051 16 1 10.0151 -6.8022 -1.7309 17 1 9.8708 -5.1192 0.0090 18 6 3.2893 -1.5720 0.6623 19 6 2.0770 -0.7947 1.2080 20 1 1.3207 -1.4859 1.5799 21 7 2.4971 0.1214 2.2712 22 6 2.5239 -0.2992 3.5514 23 8 2.2007 -1.4362 3.8231 24 6 2.9554 0.6433 4.6453 25 1 2.3459 1.5462 4.6086 26 6 4.4280 1.0131 4.4490 27 6 4.8755 1.9225 5.5976 28 6 4.6284 1.2052 6.9283 29 6 3.1480 0.8281 7.0286 30 8 2.7901 0.0079 5.9145 31 1 -0.3633 -1.0272 0.0305 32 1 -0.3633 0.4872 -0.9049 33 1 -0.3634 0.5401 0.8744 34 1 1.4561 -1.6641 -1.4164 35 1 2.1417 -0.1530 -2.0936 36 1 3.1578 -3.1247 -1.5792 37 1 4.1418 -2.0187 -2.5674 38 1 5.4509 -4.3561 -2.2792 39 1 7.5674 -6.8460 -2.9586 40 1 3.1161 -2.6440 0.7565 41 1 4.1886 -1.2890 1.2094 42 1 2.7558 1.0306 2.0539 43 1 5.0338 0.1070 4.4449 44 1 4.5487 1.5374 3.5010 45 1 4.3039 2.8502 5.5719 46 1 5.9377 2.1442 5.4947 47 1 4.8925 1.8669 7.7533 48 1 5.2380 0.3028 6.9744 49 1 2.5411 1.7336 7.0233 50 1 2.9746 0.2796 7.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206875592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -144.220678 kcal Electronic energy + Delta-G solvation = -30507.379730 eV Core-core repulsion = 26340.049161 eV Total energy + Delta-G solvation = -4167.330569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60971 -40.74212 -39.75085 -38.87749 -36.13523 -35.55628 -34.63410 -33.74584 -33.30282 -32.39310 -30.11599 -28.70354 -26.90224 -26.66283 -25.17444 -24.83082 -22.75444 -21.82302 -21.49110 -21.03839 -20.88471 -19.85397 -18.54661 -18.08907 -17.66987 -17.08584 -16.77022 -16.63042 -16.52376 -16.26397 -15.93422 -15.64658 -15.48037 -15.31211 -15.28790 -14.80903 -14.51750 -14.18823 -14.04332 -13.78307 -13.65699 -13.55999 -13.34701 -13.22431 -13.05879 -12.95439 -12.68257 -12.55038 -12.45956 -12.31421 -12.19938 -12.13923 -11.97728 -11.82820 -11.68889 -11.51926 -11.42078 -10.78589 -10.50624 -10.32824 -10.12895 -10.02880 -9.38758 -8.50451 -5.99127 1.34196 1.37739 1.47943 1.50706 1.80211 2.00776 2.25559 2.82003 3.00804 3.16034 3.23169 3.53262 3.58792 3.66258 3.74763 3.86038 3.99092 3.99766 4.01999 4.16296 4.18529 4.31724 4.33777 4.44798 4.46034 4.50397 4.59475 4.61274 4.69916 4.75778 4.81834 4.82301 4.85904 4.98412 5.00399 5.06421 5.12384 5.14957 5.19663 5.33972 5.35480 5.37394 5.50918 5.77968 5.90117 6.05626 6.10554 6.51395 6.56526 7.08972 7.18294 7.51342 8.07609 8.67164 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.003050 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.007816 B = 9176.756894 C =11484.555422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.110 0.890 4 C 0.034 3.966 5 N -0.504 5.504 6 C 0.046 3.954 7 C 0.435 3.565 8 O -0.617 6.617 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.273 1.273 16 H -0.266 1.266 17 H -0.273 1.273 18 C 0.050 3.950 19 C 0.141 3.859 20 H 0.077 0.923 21 N -0.697 5.697 22 C 0.511 3.489 23 O -0.577 6.577 24 C 0.082 3.918 25 H 0.122 0.878 26 C -0.147 4.147 27 C -0.115 4.115 28 C -0.159 4.159 29 C 0.053 3.947 30 O -0.395 6.395 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.007 0.993 41 H 0.065 0.935 42 H 0.418 0.582 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 20.932 8.784 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.128 0.872 4 C -0.093 4.093 5 N -0.228 5.228 6 C -0.085 4.085 7 C 0.223 3.777 8 O -0.503 6.503 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.191 1.191 17 H -0.198 1.198 18 C -0.079 4.079 19 C 0.035 3.965 20 H 0.096 0.904 21 N -0.351 5.351 22 C 0.298 3.702 23 O -0.456 6.456 24 C 0.021 3.979 25 H 0.139 0.861 26 C -0.185 4.185 27 C -0.153 4.153 28 C -0.197 4.197 29 C -0.023 4.023 30 O -0.314 6.314 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.137 0.863 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.083 0.917 42 H 0.256 0.744 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.119 0.881 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.925 20.519 9.472 26.035 hybrid contribution 0.668 -1.578 -0.093 1.716 sum -12.257 18.940 9.379 24.433 Atomic orbital electron populations 1.21755 0.92031 1.02227 1.03449 1.22332 0.97109 1.00018 0.90804 0.87168 1.23561 0.87156 0.99512 0.99057 1.64614 1.24452 1.32232 1.01536 1.22031 0.94015 0.93330 0.99143 1.20829 0.88043 0.82360 0.86487 1.90488 1.69531 1.62128 1.28146 1.41910 1.24307 1.28283 1.26499 1.19627 1.03148 1.13360 1.10187 0.90626 1.26030 1.02303 0.96346 0.96497 1.69672 1.41924 1.24157 1.20288 0.84950 0.77308 0.78229 0.77988 1.19866 1.19088 1.19782 1.23040 0.98341 0.96144 0.90403 1.21939 0.94587 0.92099 0.87903 0.90444 1.45747 1.67885 1.16492 1.04952 1.20942 0.76623 0.88149 0.84511 1.90706 1.49254 1.21992 1.83638 1.21961 0.97999 0.94548 0.83342 0.86063 1.22170 0.93682 1.00660 1.01960 1.21605 1.02878 0.98283 0.92494 1.22241 0.96898 1.01235 0.99337 1.22911 0.95171 0.95856 0.88318 1.88031 1.87249 1.42313 1.13843 0.93220 0.89746 0.91702 0.92815 0.86979 0.91674 0.86323 0.76981 0.91215 0.97491 0.91694 0.74402 0.93951 0.88349 0.88731 0.90362 0.88051 0.93105 0.90439 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.16 71.98 0.66 -1.21 16 2 C -0.08 -1.51 3.36 -9.59 -0.03 -1.55 16 3 H 0.11 1.58 7.76 -2.39 -0.02 1.56 16 4 C 0.03 0.74 6.00 86.65 0.52 1.26 16 5 N -0.50 -16.47 5.26 -887.56 -4.67 -21.14 16 6 C 0.05 1.67 5.48 85.56 0.47 2.14 16 7 C 0.44 21.73 7.36 87.66 0.64 22.37 16 8 O -0.62 -35.42 13.37 -3.08 -0.04 -35.46 16 9 N -0.57 -30.65 5.29 -306.98 -1.62 -32.28 16 10 C -0.33 -19.70 9.68 84.04 0.81 -18.89 16 11 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -50.91 13.05 21.66 0.28 -50.63 16 14 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.05 1.88 4.86 86.45 0.42 2.30 16 19 C 0.14 3.85 2.92 45.87 0.13 3.98 16 20 H 0.08 2.41 7.24 -2.39 -0.02 2.39 16 21 N -0.70 -16.67 4.97 -438.36 -2.18 -18.85 16 22 C 0.51 15.33 7.18 87.66 0.63 15.96 16 23 O -0.58 -24.14 16.16 15.95 0.26 -23.88 16 24 C 0.08 1.81 3.05 29.88 0.09 1.91 16 25 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 26 C -0.15 -2.91 5.37 30.69 0.16 -2.75 16 27 C -0.12 -1.57 6.03 30.72 0.19 -1.38 16 28 C -0.16 -2.34 6.14 30.69 0.19 -2.15 16 29 C 0.05 0.88 6.84 72.01 0.49 1.37 16 30 O -0.40 -10.63 9.94 -130.00 -1.29 -11.92 16 31 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 1.12 7.76 -2.39 -0.02 1.10 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.17 7.89 -2.39 -0.02 2.15 16 37 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 39 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 40 H 0.01 0.29 7.59 -2.39 -0.02 0.28 16 41 H 0.06 2.96 6.53 -2.39 -0.02 2.95 16 42 H 0.42 6.71 8.23 -92.71 -0.76 5.94 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.10 1.56 7.99 -2.39 -0.02 1.54 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -83.63 398.02 -1.94 -85.57 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.54 Total: 38.94 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 5.85 Total: 23.17 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -8.19 Total: -122.90 kcal Atomic # 8 Polarization: -70.19 SS G_CDS: -1.08 Total: -71.26 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -83.63 -1.94 -85.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.651 kcal (2) G-P(sol) polarization free energy of solvation -83.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds