Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.45544 * 2 1 4 4 C 1.54509 * 110.50768 * 237.24445 * 2 1 3 5 5 C 1.54479 * 104.06344 * 241.35071 * 4 2 1 6 6 O 1.44426 * 104.80249 * 23.98570 * 5 4 2 7 7 C 1.44427 * 105.27203 * 319.48419 * 6 5 4 8 8 H 1.08995 * 110.46925 * 281.63385 * 7 6 5 9 9 C 1.50698 * 110.37016 * 159.34234 * 7 6 5 10 10 O 1.21285 * 120.00225 * 359.62057 * 9 7 6 11 11 N 1.34771 * 120.00247 * 179.61748 * 9 7 6 12 12 C 1.46496 * 120.00536 * 180.02562 * 11 9 7 13 13 C 1.53120 * 109.52751 * 154.99896 * 12 11 9 14 14 C 1.53041 * 109.28182 * 177.55782 * 13 12 11 15 15 N 1.46849 * 109.52442 * 300.82868 * 14 13 12 16 16 C 1.46901 * 110.99649 * 185.83742 * 15 14 13 17 17 C 1.50701 * 109.46921 * 169.99608 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 C 1.46839 * 111.20047 * 61.73811 * 15 14 13 29 29 C 1.53034 * 109.52552 * 298.25821 * 28 15 14 30 30 H 1.09000 * 109.47156 * 297.39480 * 1 2 3 31 31 H 1.08998 * 109.46996 * 57.39912 * 1 2 3 32 32 H 1.09008 * 109.46550 * 177.39622 * 1 2 3 33 33 H 1.08995 * 110.51408 * 0.02562 * 4 2 1 34 34 H 1.09010 * 110.50560 * 122.57370 * 4 2 1 35 35 H 1.08999 * 110.36845 * 142.81438 * 5 4 2 36 36 H 1.09002 * 110.37460 * 265.04305 * 5 4 2 37 37 H 0.97005 * 120.00144 * 0.02562 * 11 9 7 38 38 H 1.08999 * 109.52303 * 34.87698 * 12 11 9 39 39 H 1.09005 * 109.50142 * 57.62566 * 13 12 11 40 40 H 1.08998 * 109.50777 * 297.50463 * 13 12 11 41 41 H 1.08991 * 109.46218 * 180.80508 * 14 13 12 42 42 H 1.09005 * 109.44695 * 60.83538 * 14 13 12 43 43 H 1.09002 * 109.47401 * 49.99636 * 16 15 14 44 44 H 1.09001 * 109.46874 * 289.99649 * 16 15 14 45 45 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.46266 * 58.27078 * 28 15 14 48 48 H 1.09002 * 109.46276 * 178.24270 * 28 15 14 49 49 H 1.09006 * 109.50444 * 299.24199 * 29 28 15 50 50 H 1.09003 * 109.50687 * 179.12283 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0714 -0.7830 -1.2170 5 6 2.8758 -1.9430 -0.5896 6 8 2.3070 -2.1168 0.7266 7 6 2.0714 -0.7796 1.2188 8 1 3.0013 -0.3340 1.5717 9 6 1.0480 -0.8006 2.3248 10 8 0.5490 -1.8509 2.6696 11 7 0.6871 0.3478 2.9309 12 6 -0.3073 0.3275 4.0064 13 6 -0.1014 1.5412 4.9169 14 6 -1.1803 1.5476 6.0023 15 7 -2.5070 1.6029 5.3752 16 6 -3.5618 1.7500 6.3870 17 6 -4.8727 2.0485 5.7063 18 8 -4.9234 2.1303 4.4972 19 7 -5.9890 2.2237 6.4411 20 6 -7.1817 2.4948 5.8217 21 1 -7.2266 2.5685 4.7452 22 6 -8.3324 2.6759 6.5791 23 7 -8.2776 2.5868 7.8891 24 14 -9.9576 3.0446 5.7353 25 1 -9.7526 3.0918 4.2653 26 1 -10.9392 1.9802 6.0648 27 1 -10.4730 4.3557 6.2051 28 6 -2.7460 0.4238 4.5333 29 6 -1.7139 0.3839 3.4041 30 1 -0.3633 0.4728 0.9124 31 1 -0.3633 0.5537 -0.8657 32 1 -0.3633 -1.0267 -0.0467 33 1 1.2490 -1.1697 -1.8189 34 1 2.7200 -0.1487 -1.8214 35 1 2.7535 -2.8518 -1.1788 36 1 3.9305 -1.6776 -0.5170 37 1 1.0859 1.1880 2.6550 38 1 -0.1958 -0.5874 4.5884 39 1 -0.1734 2.4550 4.3270 40 1 0.8826 1.4843 5.3823 41 1 -1.0451 2.4184 6.6437 42 1 -1.0989 0.6399 6.6003 43 1 -3.3076 2.5683 7.0607 44 1 -3.6505 0.8247 6.9565 45 1 -5.9485 2.1579 7.4079 46 1 -9.0810 2.7129 8.4178 47 1 -2.6573 -0.4785 5.1384 48 1 -3.7480 0.4785 4.1077 49 1 -1.8112 1.2795 2.7903 50 1 -1.8820 -0.4998 2.7885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229234138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -113.545818 kcal Electronic energy + Delta-G solvation = -30215.699617 eV Core-core repulsion = 26049.699210 eV Total energy + Delta-G solvation = -4166.000407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91797 -39.45317 -38.51592 -37.42101 -35.07338 -33.97027 -33.72375 -31.83658 -31.18420 -30.71302 -30.17264 -27.61231 -26.77203 -24.62638 -23.62948 -23.10207 -22.41415 -21.49865 -20.34489 -19.68148 -19.17065 -17.84188 -17.52310 -17.20825 -16.52288 -15.99095 -15.67892 -15.42795 -15.10928 -14.97512 -14.78629 -14.54607 -14.09963 -13.91283 -13.74958 -13.71947 -13.39644 -13.31486 -13.04179 -12.97051 -12.83366 -12.30057 -11.89496 -11.87450 -11.68015 -11.61687 -11.48001 -11.34116 -11.20330 -11.16532 -11.06905 -11.04011 -10.63581 -10.50632 -10.33054 -10.25460 -10.20931 -9.75174 -9.47717 -9.10362 -8.41476 -7.95972 -7.82143 -6.40292 -3.80896 2.43440 2.66524 3.17265 3.27770 3.34897 3.67973 3.92053 4.00022 4.02129 4.24725 4.26058 4.34323 4.58362 4.68915 4.69306 4.83070 4.93179 4.98862 5.05461 5.08176 5.15980 5.26226 5.26913 5.30664 5.35189 5.45033 5.51653 5.56657 5.59192 5.64254 5.68108 5.71015 5.82385 5.84698 5.97222 5.98804 6.01813 6.11906 6.24913 6.30084 6.34116 6.48724 6.56313 7.27512 7.34156 7.44530 7.56921 8.05905 8.08451 8.63604 9.19915 9.56486 10.08243 10.77555 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002071 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.452360 B =13517.045568 C =14316.757713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.151 4.151 5 C 0.041 3.959 6 O -0.343 6.343 7 C 0.058 3.942 8 H 0.093 0.907 9 C 0.524 3.476 10 O -0.517 6.517 11 N -0.724 5.724 12 C 0.145 3.855 13 C -0.119 4.119 14 C 0.058 3.942 15 N -0.516 5.516 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.055 3.945 29 C -0.120 4.120 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.023 0.977 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.264 -3.047 -11.049 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 H 0.110 0.890 4 C -0.189 4.189 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.003 4.003 8 H 0.110 0.890 9 C 0.309 3.691 10 O -0.391 6.391 11 N -0.376 5.376 12 C 0.041 3.959 13 C -0.158 4.158 14 C -0.071 4.071 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.073 4.073 29 C -0.158 4.158 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.653 -3.563 -11.666 26.613 hybrid contribution -0.501 0.093 0.598 0.786 sum 23.151 -3.471 -11.068 25.895 Atomic orbital electron populations 1.22081 0.93164 1.03189 1.03295 1.22492 0.97894 0.99695 0.93216 0.88983 1.23057 1.00754 0.97276 0.97780 1.23488 0.96767 0.99374 0.83938 1.89289 1.82875 1.23222 1.30710 1.22977 0.97577 0.85709 0.94086 0.88985 1.20039 0.82546 0.84133 0.82413 1.90748 1.54306 1.30651 1.63437 1.46051 1.44139 1.09168 1.38284 1.21134 0.87788 0.99487 0.87529 1.21831 0.98421 0.98147 0.97378 1.22029 0.88973 1.00789 0.95307 1.61543 1.00295 1.40969 1.21237 1.21835 0.91978 1.01059 0.93653 1.19751 0.84719 0.84493 0.88073 1.90482 1.85678 1.56006 1.13934 1.41882 1.06937 1.62175 1.09205 1.19737 0.84254 1.44643 0.93988 0.87876 1.25261 0.99813 0.97571 0.95416 1.69623 1.30122 1.50208 1.04412 0.85806 0.81212 0.77854 0.79509 1.19241 1.20797 1.20789 1.22216 1.01639 0.89410 0.94035 1.21925 0.92846 1.02599 0.98478 0.90998 0.91748 0.91814 0.90043 0.90118 0.88617 0.91993 0.76703 0.89753 0.90315 0.91165 0.90284 0.94980 0.89322 0.93453 0.77506 0.91964 0.95832 0.87522 0.90681 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.10 37.16 0.30 -1.12 16 2 C -0.11 -0.78 3.62 -89.05 -0.32 -1.11 16 3 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.89 6.74 -25.16 -0.17 -1.06 16 5 C 0.04 0.29 7.63 37.93 0.29 0.58 16 6 O -0.34 -3.93 10.91 -54.45 -0.59 -4.52 16 7 C 0.06 0.52 3.63 -27.11 -0.10 0.42 16 8 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 9 C 0.52 6.20 5.50 -10.99 -0.06 6.14 16 10 O -0.52 -8.66 16.21 -13.67 -0.22 -8.88 16 11 N -0.72 -6.84 3.84 -53.69 -0.21 -7.04 16 12 C 0.14 1.67 2.52 -67.81 -0.17 1.50 16 13 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 14 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 15 N -0.52 -8.37 4.40 -236.11 -1.04 -9.40 16 16 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.39 7.46 -10.98 -0.08 10.31 16 18 O -0.58 -15.31 13.90 5.55 0.08 -15.24 16 19 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.06 0.92 5.10 -3.84 -0.02 0.90 16 29 C -0.12 -1.68 5.39 -26.65 -0.14 -1.83 16 30 H 0.07 0.70 5.82 -51.93 -0.30 0.40 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 34 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 2.56 8.61 -40.82 -0.35 2.21 16 38 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 2.17 5.78 -51.93 -0.30 1.87 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -34.51 394.67 -9.64 -44.14 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.33 Total: 10.18 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.91 Total: 6.94 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.58 Total: -54.65 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.74 Total: -28.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.51 -9.64 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229234138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.404 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds