Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32883 * 2 1 4 4 O 1.44425 * 110.37399 * 237.62959 * 2 1 3 5 5 C 1.44424 * 105.27570 * 200.65374 * 4 2 1 6 6 C 1.54791 * 104.85502 * 40.46369 * 5 4 2 7 7 C 1.54475 * 110.37333 * 122.24982 * 2 1 3 8 8 H 1.09004 * 110.51020 * 261.59267 * 7 2 1 9 9 C 1.50702 * 110.51114 * 24.16469 * 7 2 1 10 10 O 1.21282 * 119.99787 * 84.75819 * 9 7 2 11 11 N 1.34770 * 120.00124 * 264.47735 * 9 7 2 12 12 C 1.46507 * 119.99943 * 179.97438 * 11 9 7 13 13 C 1.53121 * 109.52256 * 274.68540 * 12 11 9 14 14 C 1.53032 * 109.27820 * 182.43911 * 13 12 11 15 15 N 1.46853 * 109.52237 * 59.18113 * 14 13 12 16 16 C 1.46899 * 110.99762 * 174.16224 * 15 14 13 17 17 C 1.50705 * 109.46947 * 190.72470 * 16 15 14 18 18 O 1.21295 * 119.99830 * 6.07005 * 17 16 15 19 19 N 1.34771 * 120.00143 * 186.06597 * 17 16 15 20 20 C 1.37094 * 120.00051 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00213 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00233 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00287 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99760 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47286 * 89.99585 * 24 22 20 26 26 H 1.48495 * 109.46969 * 209.99856 * 24 22 20 27 27 H 1.48507 * 109.47171 * 329.99598 * 24 22 20 28 28 C 1.46844 * 111.19535 * 298.25555 * 15 14 13 29 29 C 1.53041 * 109.52207 * 61.74417 * 28 15 14 30 30 H 1.08998 * 109.47388 * 292.52570 * 1 2 3 31 31 H 1.08997 * 109.47151 * 52.53104 * 1 2 3 32 32 H 1.09002 * 109.46735 * 172.52896 * 1 2 3 33 33 H 1.09002 * 110.36885 * 159.34558 * 5 4 2 34 34 H 1.08997 * 110.37459 * 281.57270 * 5 4 2 35 35 H 1.09008 * 110.61471 * 217.50985 * 6 5 4 36 36 H 1.09005 * 110.55557 * 94.70072 * 6 5 4 37 37 H 0.97000 * 120.00467 * 0.02562 * 11 9 7 38 38 H 1.09002 * 109.51942 * 34.87472 * 12 11 9 39 39 H 1.08999 * 109.50591 * 302.38441 * 13 12 11 40 40 H 1.09007 * 109.50009 * 62.49991 * 13 12 11 41 41 H 1.08998 * 109.46548 * 299.16748 * 14 13 12 42 42 H 1.08999 * 109.46316 * 179.19840 * 14 13 12 43 43 H 1.08998 * 109.47251 * 310.72569 * 16 15 14 44 44 H 1.09001 * 109.47576 * 70.72646 * 16 15 14 45 45 H 0.97001 * 119.99735 * 0.02562 * 19 17 16 46 46 H 0.96998 * 119.99767 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.46748 * 301.72837 * 28 15 14 48 48 H 1.09007 * 109.46103 * 181.75909 * 28 15 14 49 49 H 1.09000 * 109.49854 * 180.87477 * 29 28 15 50 50 H 1.09002 * 109.53343 * 60.78304 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0879 -0.7983 6 6 3.3193 -1.5048 0.6908 7 6 2.0678 -0.7727 1.2247 8 1 2.3407 -0.0819 2.0225 9 6 1.0444 -1.7648 1.7142 10 8 0.9740 -2.8639 1.2063 11 7 0.2112 -1.4326 2.7201 12 6 -0.7840 -2.3969 3.1956 13 6 -2.0425 -2.3031 2.3283 14 6 -3.1004 -3.2688 2.8669 15 7 -3.4167 -2.9237 4.2588 16 6 -4.5273 -3.7414 4.7645 17 6 -4.9963 -3.1894 6.0861 18 8 -4.5347 -2.1498 6.5072 19 7 -5.9287 -3.8508 6.7999 20 6 -6.3550 -3.3489 8.0023 21 1 -5.9440 -2.4233 8.3774 22 6 -7.3160 -4.0310 8.7386 23 7 -7.7249 -3.5497 9.8909 24 14 -8.0265 -5.6324 8.0902 25 1 -7.2050 -6.7706 8.5749 26 1 -9.4215 -5.7870 8.5749 27 1 -8.0177 -5.6125 6.6053 28 6 -2.2339 -3.0524 5.1196 29 6 -1.1501 -2.0802 4.6482 30 1 -0.3634 0.3937 0.9492 31 1 -0.3633 0.6251 -0.8156 32 1 -0.3633 -1.0190 -0.1336 33 1 3.7242 -1.9237 -1.4117 34 1 4.0529 -0.2338 -0.9237 35 1 4.2113 -1.1741 1.2231 36 1 3.1979 -2.5843 0.7809 37 1 0.2700 -0.5549 3.1289 38 1 -0.3729 -3.4046 3.1348 39 1 -2.4302 -1.2848 2.3584 40 1 -1.7965 -2.5692 1.3002 41 1 -2.7172 -4.2883 2.8236 42 1 -4.0028 -3.1941 2.2601 43 1 -5.3495 -3.7197 4.0493 44 1 -4.1900 -4.7691 4.8992 45 1 -6.2977 -4.6823 6.4632 46 1 -8.3955 -4.0261 10.4050 47 1 -1.8548 -4.0729 5.0657 48 1 -2.5070 -2.8205 6.1491 49 1 -0.2667 -2.1871 5.2777 50 1 -1.5231 -1.0582 4.7151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229732661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -110.663802 kcal Electronic energy + Delta-G solvation = -30175.370275 eV Core-core repulsion = 26009.494841 eV Total energy + Delta-G solvation = -4165.875434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.00819 -39.50373 -38.59094 -37.57443 -35.07950 -33.91344 -33.05547 -31.92772 -31.72107 -31.33241 -30.80041 -27.56253 -26.60738 -24.58673 -23.37107 -23.07039 -22.50461 -21.83094 -20.43481 -19.59463 -19.34495 -18.27738 -17.65536 -16.96558 -16.39768 -16.04327 -15.90498 -15.68323 -15.28560 -15.07132 -15.01420 -14.68822 -14.19501 -14.00515 -13.76464 -13.55027 -13.29056 -13.11167 -13.02042 -12.74864 -12.63222 -12.48407 -12.35213 -12.20546 -11.91285 -11.66727 -11.62120 -11.45501 -11.34007 -11.33095 -11.17033 -11.15151 -10.83355 -10.59838 -10.48750 -10.25599 -9.98107 -9.85653 -9.53645 -9.19930 -8.56776 -8.18118 -7.96569 -6.31493 -3.82718 2.35706 2.88254 3.02690 3.06630 3.15014 3.46356 3.74455 3.91022 4.02455 4.10120 4.22261 4.39523 4.62381 4.67304 4.68905 4.75856 4.87248 4.88975 4.92720 5.02086 5.06798 5.16839 5.19747 5.24564 5.36915 5.38596 5.42316 5.45099 5.53125 5.58363 5.61942 5.68090 5.68906 5.75458 5.81707 5.92193 5.93871 5.96728 6.08653 6.18303 6.34374 6.37520 6.43760 7.15705 7.28211 7.32626 7.58699 8.00751 8.14266 8.60363 8.95148 9.42553 9.83798 10.81614 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.001929 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.297705 B =14514.649908 C =14635.521700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 H 0.080 0.920 4 O -0.364 6.364 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.145 4.145 8 H 0.103 0.897 9 C 0.527 3.473 10 O -0.533 6.533 11 N -0.724 5.724 12 C 0.144 3.856 13 C -0.122 4.122 14 C 0.058 3.942 15 N -0.515 5.515 16 C 0.043 3.957 17 C 0.452 3.548 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.058 3.942 29 C -0.118 4.118 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.400 0.600 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.026 0.974 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.183 4.046 -19.381 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 H 0.098 0.902 4 O -0.283 6.283 5 C -0.029 4.029 6 C -0.181 4.181 7 C -0.167 4.167 8 H 0.121 0.879 9 C 0.313 3.687 10 O -0.409 6.409 11 N -0.375 5.375 12 C 0.039 3.961 13 C -0.161 4.161 14 C -0.071 4.071 15 N -0.240 5.240 16 C -0.088 4.088 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.070 4.070 29 C -0.157 4.157 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.234 0.766 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.121 0.879 49 H 0.088 0.912 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.040 4.373 -19.448 28.266 hybrid contribution -0.363 -1.666 0.081 1.707 sum 19.677 2.707 -19.367 27.742 Atomic orbital electron populations 1.21975 0.92702 1.03864 1.02944 1.22857 0.95825 0.94806 0.83473 0.90240 1.89195 1.27143 1.74357 1.37611 1.23435 0.84585 0.99915 0.94967 1.23010 0.96017 1.02896 0.96133 1.22823 0.95895 0.97915 1.00096 0.87913 1.20153 0.81361 0.87974 0.79197 1.90707 1.70929 1.22757 1.56507 1.46194 1.36003 1.18544 1.36711 1.21115 0.87794 0.93271 0.93883 1.21930 0.94272 1.00992 0.98882 1.22057 0.98560 0.96641 0.89826 1.61516 1.06376 1.55009 1.01066 1.21882 0.94914 0.94843 0.97176 1.19661 0.83431 0.86782 0.86322 1.90539 1.58394 1.23962 1.71124 1.42234 1.37642 1.22980 1.20326 1.19416 1.20578 1.09508 0.93737 0.86281 1.25037 0.97071 0.98291 0.95797 1.69619 1.30732 1.39246 1.12592 0.86680 0.79822 0.83946 0.78992 1.19684 1.20192 1.19478 1.22125 0.89058 0.96257 0.99549 1.21822 0.98397 1.01738 0.93711 0.90708 0.91312 0.91076 0.88825 0.92174 0.89974 0.88892 0.76596 0.89843 0.90690 0.91289 0.95009 0.90463 0.89076 0.93463 0.79742 0.91639 0.95603 0.87909 0.91198 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.53 37.16 0.32 -0.96 16 2 C 0.09 0.69 3.83 -25.96 -0.10 0.59 16 3 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 4 O -0.36 -3.73 11.34 -35.23 -0.40 -4.13 16 5 C 0.05 0.35 7.64 38.10 0.29 0.64 16 6 C -0.14 -1.02 6.62 -25.00 -0.17 -1.19 16 7 C -0.15 -1.07 3.42 -90.21 -0.31 -1.37 16 8 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 9 C 0.53 5.38 4.81 -10.99 -0.05 5.32 16 10 O -0.53 -7.62 15.42 5.56 0.09 -7.54 16 11 N -0.72 -6.36 4.59 -53.68 -0.25 -6.60 16 12 C 0.14 1.57 2.53 -67.81 -0.17 1.39 16 13 C -0.12 -1.38 5.67 -26.65 -0.15 -1.53 16 14 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 15 N -0.51 -7.96 4.35 -236.11 -1.03 -8.99 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 17 C 0.45 10.05 7.32 -10.99 -0.08 9.97 16 18 O -0.56 -14.47 14.29 5.54 0.08 -14.39 16 19 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 20 C -0.30 -8.48 10.16 -14.93 -0.15 -8.64 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C 0.06 0.87 5.12 -3.83 -0.02 0.85 16 29 C -0.12 -1.38 5.57 -26.65 -0.15 -1.53 16 30 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.75 7.28 -51.93 -0.38 0.38 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.09 0.87 6.93 -51.93 -0.36 0.51 16 37 H 0.40 2.52 8.61 -40.82 -0.35 2.17 16 38 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.09 1.34 7.97 -51.93 -0.41 0.92 16 44 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 45 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 1.88 6.06 -51.92 -0.31 1.56 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -34.66 392.49 -8.78 -43.44 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.31 Total: 10.56 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.88 Total: 5.96 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.55 Total: -54.39 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.23 Total: -26.06 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.66 -8.78 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.219 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds