Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32883 * 2 1 4 4 O 1.44425 * 110.37399 * 237.62959 * 2 1 3 5 5 C 1.44424 * 105.27570 * 200.65374 * 4 2 1 6 6 C 1.54791 * 104.85502 * 40.46369 * 5 4 2 7 7 C 1.54475 * 110.37333 * 122.24982 * 2 1 3 8 8 H 1.09004 * 110.51020 * 261.59267 * 7 2 1 9 9 C 1.50702 * 110.51114 * 24.16469 * 7 2 1 10 10 O 1.21282 * 119.99787 * 84.75819 * 9 7 2 11 11 N 1.34770 * 120.00124 * 264.47735 * 9 7 2 12 12 C 1.46507 * 119.99943 * 179.97438 * 11 9 7 13 13 C 1.53121 * 109.52256 * 274.68540 * 12 11 9 14 14 C 1.53032 * 109.27820 * 182.43911 * 13 12 11 15 15 N 1.46853 * 109.52237 * 59.18113 * 14 13 12 16 16 C 1.46899 * 110.99762 * 174.16224 * 15 14 13 17 17 C 1.50705 * 109.46947 * 190.72470 * 16 15 14 18 18 O 1.21295 * 119.99830 * 6.07005 * 17 16 15 19 19 N 1.34771 * 120.00143 * 186.06597 * 17 16 15 20 20 C 1.37094 * 120.00051 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00213 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00233 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00287 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99760 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47286 * 89.99585 * 24 22 20 26 26 H 1.48495 * 109.46969 * 209.99856 * 24 22 20 27 27 H 1.48507 * 109.47171 * 329.99598 * 24 22 20 28 28 C 1.46844 * 111.19535 * 298.25555 * 15 14 13 29 29 C 1.53041 * 109.52207 * 61.74417 * 28 15 14 30 30 H 1.08998 * 109.47388 * 292.52570 * 1 2 3 31 31 H 1.08997 * 109.47151 * 52.53104 * 1 2 3 32 32 H 1.09002 * 109.46735 * 172.52896 * 1 2 3 33 33 H 1.09002 * 110.36885 * 159.34558 * 5 4 2 34 34 H 1.08997 * 110.37459 * 281.57270 * 5 4 2 35 35 H 1.09008 * 110.61471 * 217.50985 * 6 5 4 36 36 H 1.09005 * 110.55557 * 94.70072 * 6 5 4 37 37 H 0.97000 * 120.00467 * 0.02562 * 11 9 7 38 38 H 1.09002 * 109.51942 * 34.87472 * 12 11 9 39 39 H 1.08999 * 109.50591 * 302.38441 * 13 12 11 40 40 H 1.09007 * 109.50009 * 62.49991 * 13 12 11 41 41 H 1.08998 * 109.46548 * 299.16748 * 14 13 12 42 42 H 1.08999 * 109.46316 * 179.19840 * 14 13 12 43 43 H 1.08998 * 109.47251 * 310.72569 * 16 15 14 44 44 H 1.09001 * 109.47576 * 70.72646 * 16 15 14 45 45 H 0.97001 * 119.99735 * 0.02562 * 19 17 16 46 46 H 0.96998 * 119.99767 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.46748 * 301.72837 * 28 15 14 48 48 H 1.09007 * 109.46103 * 181.75909 * 28 15 14 49 49 H 1.09000 * 109.49854 * 180.87477 * 29 28 15 50 50 H 1.09002 * 109.53343 * 60.78304 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0879 -0.7983 6 6 3.3193 -1.5048 0.6908 7 6 2.0678 -0.7727 1.2247 8 1 2.3407 -0.0819 2.0225 9 6 1.0444 -1.7648 1.7142 10 8 0.9740 -2.8639 1.2063 11 7 0.2112 -1.4326 2.7201 12 6 -0.7840 -2.3969 3.1956 13 6 -2.0425 -2.3031 2.3283 14 6 -3.1004 -3.2688 2.8669 15 7 -3.4167 -2.9237 4.2588 16 6 -4.5273 -3.7414 4.7645 17 6 -4.9963 -3.1894 6.0861 18 8 -4.5347 -2.1498 6.5072 19 7 -5.9287 -3.8508 6.7999 20 6 -6.3550 -3.3489 8.0023 21 1 -5.9440 -2.4233 8.3774 22 6 -7.3160 -4.0310 8.7386 23 7 -7.7249 -3.5497 9.8909 24 14 -8.0265 -5.6324 8.0902 25 1 -7.2050 -6.7706 8.5749 26 1 -9.4215 -5.7870 8.5749 27 1 -8.0177 -5.6125 6.6053 28 6 -2.2339 -3.0524 5.1196 29 6 -1.1501 -2.0802 4.6482 30 1 -0.3634 0.3937 0.9492 31 1 -0.3633 0.6251 -0.8156 32 1 -0.3633 -1.0190 -0.1336 33 1 3.7242 -1.9237 -1.4117 34 1 4.0529 -0.2338 -0.9237 35 1 4.2113 -1.1741 1.2231 36 1 3.1979 -2.5843 0.7809 37 1 0.2700 -0.5549 3.1289 38 1 -0.3729 -3.4046 3.1348 39 1 -2.4302 -1.2848 2.3584 40 1 -1.7965 -2.5692 1.3002 41 1 -2.7172 -4.2883 2.8236 42 1 -4.0028 -3.1941 2.2601 43 1 -5.3495 -3.7197 4.0493 44 1 -4.1900 -4.7691 4.8992 45 1 -6.2977 -4.6823 6.4632 46 1 -8.3955 -4.0261 10.4050 47 1 -1.8548 -4.0729 5.0657 48 1 -2.5070 -2.8205 6.1491 49 1 -0.2667 -2.1871 5.2777 50 1 -1.5231 -1.0582 4.7151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229732661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -138.831788 kcal Electronic energy + Delta-G solvation = -30176.591731 eV Core-core repulsion = 26009.494841 eV Total energy + Delta-G solvation = -4167.096889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74644 -40.73250 -39.74813 -38.79451 -36.23969 -35.75415 -33.84408 -33.69308 -32.53830 -32.29592 -31.82941 -28.90070 -27.38400 -26.18755 -24.49850 -24.08103 -23.07240 -22.71101 -21.30121 -21.23853 -20.46351 -20.17916 -18.33378 -17.80066 -17.65682 -17.14460 -16.87056 -16.57075 -16.47407 -16.34422 -16.10395 -15.76796 -15.44017 -15.14421 -15.06435 -14.82334 -14.54618 -14.32925 -14.13916 -13.91228 -13.75419 -13.37740 -13.27888 -13.22210 -12.96307 -12.92127 -12.72700 -12.41619 -12.39477 -12.28273 -12.18169 -11.98616 -11.96620 -11.90581 -11.79855 -11.61775 -11.39827 -10.93668 -10.60273 -10.34439 -10.21497 -10.05131 -9.21520 -8.39943 -5.99974 1.30794 1.35461 1.44333 1.58992 1.98055 2.12624 2.23444 2.60764 2.92328 3.16506 3.21843 3.44162 3.61705 3.71351 3.84531 3.89193 4.04797 4.11727 4.13539 4.22124 4.25722 4.33053 4.36533 4.36666 4.40665 4.49492 4.50665 4.53094 4.63381 4.64958 4.71645 4.85965 4.89783 4.93018 4.95653 4.97528 5.04976 5.11443 5.12281 5.20011 5.30810 5.51259 5.54653 5.89370 5.91170 6.03338 6.19904 6.57564 6.61813 6.90548 7.26632 7.42297 7.99326 8.77556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.001929 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.297705 B =14514.649908 C =14635.521700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.109 0.891 4 O -0.399 6.399 5 C 0.043 3.957 6 C -0.142 4.142 7 C -0.142 4.142 8 H 0.139 0.861 9 C 0.526 3.474 10 O -0.579 6.579 11 N -0.712 5.712 12 C 0.153 3.847 13 C -0.114 4.114 14 C 0.060 3.940 15 N -0.532 5.532 16 C 0.053 3.947 17 C 0.453 3.547 18 O -0.601 6.601 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.057 0.943 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.962 3.038 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.232 1.232 28 C 0.058 3.942 29 C -0.107 4.107 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.388 0.612 46 H 0.278 0.722 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.053 3.290 -21.579 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.127 0.873 4 O -0.318 6.318 5 C -0.033 4.033 6 C -0.180 4.180 7 C -0.164 4.164 8 H 0.157 0.843 9 C 0.314 3.686 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.048 3.952 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.257 5.257 16 C -0.078 4.078 17 C 0.241 3.759 18 O -0.485 6.485 19 N -0.236 5.236 20 C -0.453 4.453 21 H 0.075 0.925 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.155 1.155 28 C -0.070 4.070 29 C -0.146 4.146 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.093 0.907 45 H 0.223 0.777 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.934 3.645 -21.663 30.345 hybrid contribution -0.555 -1.310 0.787 1.626 sum 20.379 2.335 -20.877 29.268 Atomic orbital electron populations 1.21972 0.93432 1.02042 1.03898 1.23066 0.95380 0.95957 0.82841 0.87329 1.89160 1.28700 1.75005 1.38972 1.23609 0.83873 1.00917 0.94917 1.23019 0.97149 1.01236 0.96561 1.22920 0.94802 0.97636 1.01003 0.84273 1.20705 0.81491 0.87841 0.78595 1.90688 1.72206 1.24936 1.57974 1.46050 1.35136 1.18794 1.36348 1.20854 0.88066 0.93068 0.93202 1.21847 0.94107 1.00753 0.98615 1.22115 0.99511 0.97218 0.87939 1.61486 1.06296 1.55475 1.02480 1.21825 0.96317 0.95725 0.93953 1.20832 0.81672 0.85783 0.87641 1.90523 1.59343 1.26046 1.72587 1.42067 1.38444 1.23890 1.19238 1.18988 1.21787 1.08344 0.96183 0.92462 1.26077 0.96803 1.02944 0.95599 1.69799 1.31651 1.41651 1.14454 0.85399 0.78443 0.77477 0.80430 1.18327 1.20112 1.15539 1.22035 0.89843 0.97580 0.97566 1.21699 0.97864 1.00546 0.94450 0.89252 0.90965 0.94096 0.89181 0.89599 0.87093 0.91676 0.74843 0.91373 0.90653 0.91549 0.94269 0.89127 0.86233 0.90747 0.77656 0.91233 0.94659 0.91934 0.89876 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.53 71.98 0.61 -1.69 16 2 C 0.09 1.13 3.83 31.10 0.12 1.25 16 3 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 4 O -0.40 -7.73 11.34 -148.98 -1.69 -9.42 16 5 C 0.04 0.56 7.64 72.59 0.55 1.11 16 6 C -0.14 -1.77 6.62 31.72 0.21 -1.56 16 7 C -0.14 -1.73 3.42 -10.53 -0.04 -1.77 16 8 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 9 C 0.53 10.09 4.81 87.66 0.42 10.51 16 10 O -0.58 -16.58 15.42 -3.04 -0.05 -16.63 16 11 N -0.71 -11.31 4.59 -442.15 -2.03 -13.34 16 12 C 0.15 3.15 2.53 45.07 0.11 3.27 16 13 C -0.11 -2.42 5.67 30.65 0.17 -2.25 16 14 C 0.06 1.36 5.46 86.32 0.47 1.83 16 15 N -0.53 -15.67 4.35 -900.91 -3.91 -19.59 16 16 C 0.05 1.63 5.45 85.56 0.47 2.10 16 17 C 0.45 20.17 7.32 87.66 0.64 20.81 16 18 O -0.60 -32.38 14.29 -3.08 -0.04 -32.42 16 19 N -0.59 -27.82 5.09 -306.98 -1.56 -29.39 16 20 C -0.32 -18.81 10.16 84.04 0.85 -17.96 16 21 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 24 Si 0.96 38.83 27.74 68.60 1.90 40.74 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 28 C 0.06 1.71 5.12 86.33 0.44 2.15 16 29 C -0.11 -2.41 5.57 30.65 0.17 -2.24 16 30 H 0.09 1.00 7.66 -2.39 -0.02 0.98 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.86 7.28 -2.39 -0.02 0.84 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 1.20 6.93 -2.38 -0.02 1.18 16 37 H 0.41 4.19 8.61 -92.71 -0.80 3.39 16 38 H 0.07 1.67 7.57 -2.39 -0.02 1.65 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.83 8.01 -2.39 -0.02 1.81 16 43 H 0.12 3.06 7.97 -2.39 -0.02 3.04 16 44 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 45 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 46 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 2.36 6.06 -2.38 -0.01 2.34 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -82.50 392.49 -1.84 -84.33 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.44 Total: 36.48 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.68 Total: 15.15 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.21 Total: -118.22 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -1.78 Total: -58.47 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.74 kcal Total: -82.50 -1.84 -84.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.498 kcal (2) G-P(sol) polarization free energy of solvation -82.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds