Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.67948 * 2 1 4 4 O 1.44388 * 110.61754 * 237.03641 * 2 1 3 5 5 C 1.43749 * 106.97134 * 201.44078 * 4 2 1 6 6 C 1.54092 * 107.29842 * 26.51189 * 5 4 2 7 7 C 1.54819 * 104.18756 * 357.97305 * 6 5 4 8 8 H 1.08994 * 110.91107 * 97.35466 * 7 6 5 9 9 C 1.50703 * 110.90576 * 220.92277 * 7 6 5 10 10 O 1.21282 * 119.99997 * 118.54070 * 9 7 6 11 11 N 1.34778 * 119.99815 * 298.54415 * 9 7 6 12 12 C 1.46501 * 119.99787 * 180.02562 * 11 9 7 13 13 C 1.53124 * 109.52145 * 85.31778 * 12 11 9 14 14 C 1.53039 * 109.27498 * 177.55744 * 13 12 11 15 15 N 1.46843 * 109.52391 * 300.81655 * 14 13 12 16 16 C 1.46901 * 111.00022 * 185.84211 * 15 14 13 17 17 C 1.50697 * 109.46966 * 65.79105 * 16 15 14 18 18 O 1.21286 * 120.00040 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99501 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99543 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99679 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99969 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00267 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47049 * 89.99935 * 24 22 20 26 26 H 1.48498 * 109.47068 * 209.99709 * 24 22 20 27 27 H 1.48500 * 109.47060 * 329.99862 * 24 22 20 28 28 C 1.46854 * 111.19690 * 61.74512 * 15 14 13 29 29 C 1.53029 * 109.52283 * 298.25524 * 28 15 14 30 30 H 1.09003 * 109.46710 * 297.03337 * 1 2 3 31 31 H 1.08995 * 109.46917 * 57.03472 * 1 2 3 32 32 H 1.08994 * 109.47160 * 177.03256 * 1 2 3 33 33 H 1.09001 * 109.87462 * 267.08091 * 5 4 2 34 34 H 1.09002 * 109.87481 * 145.94293 * 5 4 2 35 35 H 1.08997 * 110.49142 * 239.29428 * 6 5 4 36 36 H 1.09005 * 110.48860 * 116.64460 * 6 5 4 37 37 H 0.97003 * 119.99706 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.57436 * 325.15457 * 12 11 9 39 39 H 1.08997 * 109.50088 * 297.49652 * 13 12 11 40 40 H 1.09004 * 109.50324 * 57.61826 * 13 12 11 41 41 H 1.09001 * 109.45805 * 180.80724 * 14 13 12 42 42 H 1.08997 * 109.46104 * 60.83468 * 14 13 12 43 43 H 1.09000 * 109.47018 * 185.79312 * 16 15 14 44 44 H 1.09005 * 109.47082 * 305.79240 * 16 15 14 45 45 H 0.96996 * 120.00353 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00320 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.45788 * 178.23958 * 28 15 14 48 48 H 1.09001 * 109.46218 * 58.27561 * 28 15 14 49 49 H 1.08994 * 109.50822 * 299.23828 * 29 28 15 50 50 H 1.09001 * 109.50199 * 179.11868 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 8 2.0384 -0.7353 -1.1339 5 6 3.3840 -1.1255 -0.8118 6 6 3.4795 -1.2168 0.7234 7 6 2.0758 -0.7894 1.2171 8 1 1.4551 -1.6606 1.4264 9 6 2.1796 0.0978 2.4308 10 8 1.7553 1.2333 2.3900 11 7 2.7442 -0.3704 3.5615 12 6 2.8446 0.4919 4.7416 13 6 1.5424 0.4156 5.5434 14 6 1.6757 1.2702 6.8060 15 7 2.7988 0.7793 7.6146 16 6 2.8712 1.4871 8.8998 17 6 1.6554 1.1542 9.7256 18 8 0.8114 0.4019 9.2865 19 7 1.5059 1.6926 10.9522 20 6 0.3995 1.3902 11.7033 21 1 -0.3520 0.7203 11.3123 22 6 0.2451 1.9457 12.9675 23 7 -0.8151 1.6555 13.6877 24 14 1.5446 3.1050 13.6435 25 1 1.2099 4.5005 13.2615 26 1 1.5858 2.9933 15.1237 27 1 2.8710 2.7428 13.0826 28 6 4.0672 0.8870 6.8823 29 6 4.0054 0.0210 5.6222 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5592 -0.8622 32 1 -0.3633 -1.0262 -0.0532 33 1 4.0854 -0.3783 -1.1831 34 1 3.6045 -2.0964 -1.2554 35 1 4.2407 -0.5333 1.0997 36 1 3.6975 -2.2393 1.0320 37 1 3.0833 -1.2787 3.5942 38 1 3.0196 1.5211 4.4280 39 1 0.7185 0.7899 4.9359 40 1 1.3477 -0.6197 5.8237 41 1 0.7552 1.2066 7.3864 42 1 1.8567 2.3077 6.5248 43 1 3.7694 1.1783 9.4346 44 1 2.9060 2.5619 8.7213 45 1 2.1806 2.2946 11.3031 46 1 -0.9231 2.0435 14.5701 47 1 4.8838 0.5451 7.5183 48 1 4.2370 1.9263 6.6009 49 1 3.8494 -1.0204 5.9035 50 1 4.9412 0.1134 5.0709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229732667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -113.623062 kcal Electronic energy + Delta-G solvation = -29839.206644 eV Core-core repulsion = 25673.202887 eV Total energy + Delta-G solvation = -4166.003757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88166 -39.56061 -38.71062 -37.63315 -35.13184 -33.92606 -33.08669 -32.00089 -31.70920 -31.30050 -30.80436 -27.64068 -26.67082 -24.51753 -23.27070 -23.12566 -22.40272 -21.80370 -20.52347 -19.82110 -19.36806 -18.28103 -17.92519 -16.69776 -16.50512 -16.07594 -15.69915 -15.54787 -15.32511 -15.07475 -14.92555 -14.64563 -14.27323 -14.12661 -13.89489 -13.60920 -13.43384 -13.29415 -13.01975 -12.80578 -12.67521 -12.49691 -12.34224 -12.24430 -11.87340 -11.82226 -11.72613 -11.49620 -11.29624 -11.21758 -11.18730 -11.12789 -10.74263 -10.60793 -10.58304 -10.16206 -9.98113 -9.92135 -9.55028 -9.22129 -8.56649 -8.18418 -7.96434 -6.31278 -3.82631 2.32372 2.81144 3.02005 3.06295 3.14640 3.40556 3.73305 3.89251 3.99863 4.09955 4.20076 4.29035 4.51164 4.60527 4.74579 4.76601 4.81624 4.84078 4.96100 5.03766 5.13166 5.20630 5.22334 5.25588 5.29559 5.33211 5.44376 5.46222 5.50641 5.55909 5.59027 5.65514 5.71192 5.72094 5.86057 5.89971 5.91016 5.94172 6.03427 6.19198 6.40328 6.46632 6.48400 7.14706 7.23086 7.32195 7.58495 7.93642 8.14461 8.60088 8.95147 9.42351 9.83281 10.81824 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.001914 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.276284 B =14623.594404 C =15153.862018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.094 3.906 3 H 0.083 0.917 4 O -0.374 6.374 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.144 4.144 8 H 0.114 0.886 9 C 0.525 3.475 10 O -0.534 6.534 11 N -0.722 5.722 12 C 0.142 3.858 13 C -0.120 4.120 14 C 0.054 3.946 15 N -0.516 5.516 16 C 0.043 3.957 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.058 3.942 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.400 0.600 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.024 0.976 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.079 0.921 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.679 -4.020 -24.878 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.037 3.963 3 H 0.101 0.899 4 O -0.294 6.294 5 C -0.028 4.028 6 C -0.185 4.185 7 C -0.166 4.166 8 H 0.132 0.868 9 C 0.311 3.689 10 O -0.410 6.410 11 N -0.372 5.372 12 C 0.038 3.962 13 C -0.159 4.159 14 C -0.074 4.074 15 N -0.241 5.241 16 C -0.088 4.088 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.070 4.070 29 C -0.158 4.158 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.234 0.766 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.043 0.957 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.473 -4.216 -25.100 28.344 hybrid contribution 1.504 1.322 0.930 2.208 sum 13.977 -2.894 -24.171 28.070 Atomic orbital electron populations 1.21771 0.92407 1.02782 1.03263 1.22947 0.95807 0.95313 0.82271 0.89885 1.88913 1.27562 1.73860 1.39018 1.23109 0.84984 1.00762 0.93964 1.22952 0.95873 1.03238 0.96480 1.22992 0.98896 1.00047 0.94657 0.86813 1.20190 0.77312 0.87683 0.83764 1.90730 1.47293 1.19197 1.83804 1.46108 1.61653 1.17202 1.12240 1.21147 0.96046 0.94889 0.84093 1.21913 0.96593 1.01987 0.95388 1.22231 0.96609 0.94746 0.93772 1.61535 1.02717 1.56875 1.02955 1.21868 0.99128 0.96594 0.91215 1.19645 0.88535 0.85149 0.82858 1.90524 1.44340 1.38164 1.71001 1.42222 1.22032 1.43445 1.15399 1.19421 0.98905 1.27703 0.97209 0.86272 1.25042 0.96989 0.98028 0.96159 1.69622 1.27127 1.43729 1.11681 0.86673 0.81416 0.81644 0.79655 1.19675 1.20193 1.19499 1.22028 0.92671 0.97809 0.94541 1.21826 0.97251 1.01404 0.95330 0.90368 0.91598 0.91893 0.92123 0.89484 0.90104 0.89447 0.76615 0.89772 0.91339 0.90627 0.87457 0.95746 0.89185 0.93329 0.79739 0.91631 0.90266 0.94960 0.90270 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.66 37.16 0.36 -0.90 16 2 C 0.09 0.86 3.02 -25.68 -0.08 0.79 16 3 H 0.08 0.87 7.53 -51.93 -0.39 0.48 16 4 O -0.37 -3.54 11.22 -35.23 -0.40 -3.93 16 5 C 0.05 0.31 7.70 37.73 0.29 0.60 16 6 C -0.15 -0.79 6.55 -25.20 -0.16 -0.96 16 7 C -0.14 -1.09 2.95 -89.76 -0.26 -1.36 16 8 H 0.11 0.74 8.06 -51.93 -0.42 0.32 16 9 C 0.52 5.29 7.02 -10.98 -0.08 5.21 16 10 O -0.53 -7.46 15.35 5.56 0.09 -7.38 16 11 N -0.72 -6.20 5.03 -53.68 -0.27 -6.47 16 12 C 0.14 1.52 2.52 -67.80 -0.17 1.35 16 13 C -0.12 -1.62 5.67 -26.65 -0.15 -1.77 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 N -0.52 -7.89 4.40 -236.11 -1.04 -8.93 16 16 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 17 C 0.45 10.09 7.46 -10.98 -0.08 10.01 16 18 O -0.56 -14.59 13.90 5.55 0.08 -14.51 16 19 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 20 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.69 13.96 55.50 0.77 -24.91 16 24 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 29 C -0.12 -1.10 5.57 -26.65 -0.15 -1.25 16 30 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 2.37 8.60 -40.82 -0.35 2.02 16 38 H 0.08 1.03 7.58 -51.93 -0.39 0.64 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.11 2.11 5.78 -51.93 -0.30 1.81 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 1.27 7.99 -51.93 -0.41 0.86 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -34.28 395.77 -8.75 -43.03 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -8.37 Total: 10.35 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.80 Total: 6.22 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.59 Total: -54.30 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.23 Total: -25.82 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.28 -8.75 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.589 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds