Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.67948 * 2 1 4 4 O 1.44388 * 110.61754 * 237.03641 * 2 1 3 5 5 C 1.43749 * 106.97134 * 201.44078 * 4 2 1 6 6 C 1.54092 * 107.29842 * 26.51189 * 5 4 2 7 7 C 1.54819 * 104.18756 * 357.97305 * 6 5 4 8 8 H 1.08994 * 110.91107 * 97.35466 * 7 6 5 9 9 C 1.50703 * 110.90576 * 220.92277 * 7 6 5 10 10 O 1.21282 * 119.99997 * 118.54070 * 9 7 6 11 11 N 1.34778 * 119.99815 * 298.54415 * 9 7 6 12 12 C 1.46501 * 119.99787 * 180.02562 * 11 9 7 13 13 C 1.53124 * 109.52145 * 85.31778 * 12 11 9 14 14 C 1.53039 * 109.27498 * 177.55744 * 13 12 11 15 15 N 1.46843 * 109.52391 * 300.81655 * 14 13 12 16 16 C 1.46901 * 111.00022 * 185.84211 * 15 14 13 17 17 C 1.50697 * 109.46966 * 65.79105 * 16 15 14 18 18 O 1.21286 * 120.00040 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99501 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99543 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99679 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99969 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00267 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47049 * 89.99935 * 24 22 20 26 26 H 1.48498 * 109.47068 * 209.99709 * 24 22 20 27 27 H 1.48500 * 109.47060 * 329.99862 * 24 22 20 28 28 C 1.46854 * 111.19690 * 61.74512 * 15 14 13 29 29 C 1.53029 * 109.52283 * 298.25524 * 28 15 14 30 30 H 1.09003 * 109.46710 * 297.03337 * 1 2 3 31 31 H 1.08995 * 109.46917 * 57.03472 * 1 2 3 32 32 H 1.08994 * 109.47160 * 177.03256 * 1 2 3 33 33 H 1.09001 * 109.87462 * 267.08091 * 5 4 2 34 34 H 1.09002 * 109.87481 * 145.94293 * 5 4 2 35 35 H 1.08997 * 110.49142 * 239.29428 * 6 5 4 36 36 H 1.09005 * 110.48860 * 116.64460 * 6 5 4 37 37 H 0.97003 * 119.99706 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.57436 * 325.15457 * 12 11 9 39 39 H 1.08997 * 109.50088 * 297.49652 * 13 12 11 40 40 H 1.09004 * 109.50324 * 57.61826 * 13 12 11 41 41 H 1.09001 * 109.45805 * 180.80724 * 14 13 12 42 42 H 1.08997 * 109.46104 * 60.83468 * 14 13 12 43 43 H 1.09000 * 109.47018 * 185.79312 * 16 15 14 44 44 H 1.09005 * 109.47082 * 305.79240 * 16 15 14 45 45 H 0.96996 * 120.00353 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00320 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.45788 * 178.23958 * 28 15 14 48 48 H 1.09001 * 109.46218 * 58.27561 * 28 15 14 49 49 H 1.08994 * 109.50822 * 299.23828 * 29 28 15 50 50 H 1.09001 * 109.50199 * 179.11868 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 8 2.0384 -0.7353 -1.1339 5 6 3.3840 -1.1255 -0.8118 6 6 3.4795 -1.2168 0.7234 7 6 2.0758 -0.7894 1.2171 8 1 1.4551 -1.6606 1.4264 9 6 2.1796 0.0978 2.4308 10 8 1.7553 1.2333 2.3900 11 7 2.7442 -0.3704 3.5615 12 6 2.8446 0.4919 4.7416 13 6 1.5424 0.4156 5.5434 14 6 1.6757 1.2702 6.8060 15 7 2.7988 0.7793 7.6146 16 6 2.8712 1.4871 8.8998 17 6 1.6554 1.1542 9.7256 18 8 0.8114 0.4019 9.2865 19 7 1.5059 1.6926 10.9522 20 6 0.3995 1.3902 11.7033 21 1 -0.3520 0.7203 11.3123 22 6 0.2451 1.9457 12.9675 23 7 -0.8151 1.6555 13.6877 24 14 1.5446 3.1050 13.6435 25 1 1.2099 4.5005 13.2615 26 1 1.5858 2.9933 15.1237 27 1 2.8710 2.7428 13.0826 28 6 4.0672 0.8870 6.8823 29 6 4.0054 0.0210 5.6222 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5592 -0.8622 32 1 -0.3633 -1.0262 -0.0532 33 1 4.0854 -0.3783 -1.1831 34 1 3.6045 -2.0964 -1.2554 35 1 4.2407 -0.5333 1.0997 36 1 3.6975 -2.2393 1.0320 37 1 3.0833 -1.2787 3.5942 38 1 3.0196 1.5211 4.4280 39 1 0.7185 0.7899 4.9359 40 1 1.3477 -0.6197 5.8237 41 1 0.7552 1.2066 7.3864 42 1 1.8567 2.3077 6.5248 43 1 3.7694 1.1783 9.4346 44 1 2.9060 2.5619 8.7213 45 1 2.1806 2.2946 11.3031 46 1 -0.9231 2.0435 14.5701 47 1 4.8838 0.5451 7.5183 48 1 4.2370 1.9263 6.6009 49 1 3.8494 -1.0204 5.9035 50 1 4.9412 0.1134 5.0709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229732667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -141.744452 kcal Electronic energy + Delta-G solvation = -29840.426079 eV Core-core repulsion = 25673.202887 eV Total energy + Delta-G solvation = -4167.223192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64437 -40.74358 -39.84580 -38.88894 -36.27970 -35.76961 -33.86795 -33.71049 -32.70840 -32.15839 -31.81725 -28.92604 -27.51867 -26.14880 -24.28323 -24.18707 -23.03433 -22.58476 -21.38076 -21.24984 -20.70495 -20.19462 -18.64998 -17.73989 -17.46088 -17.20280 -16.89400 -16.60897 -16.38796 -16.17973 -16.00759 -15.73889 -15.43715 -15.13519 -14.95840 -14.86526 -14.68024 -14.49453 -14.28511 -14.04369 -13.77431 -13.44556 -13.35362 -13.24763 -13.01396 -12.90654 -12.78708 -12.42096 -12.37580 -12.27638 -12.17666 -12.09974 -11.97542 -11.85051 -11.72241 -11.53042 -11.44169 -10.92625 -10.63850 -10.36853 -10.23420 -10.04839 -9.20177 -8.40437 -6.00975 1.30197 1.35860 1.44717 1.53935 1.97705 2.05965 2.23535 2.63130 2.80270 3.15669 3.21733 3.44986 3.59086 3.66415 3.79629 3.86795 4.04181 4.08780 4.13795 4.15733 4.26304 4.28082 4.34737 4.36154 4.41924 4.50460 4.55621 4.59591 4.64749 4.68230 4.75757 4.84584 4.89934 4.92574 4.99122 5.01851 5.06856 5.08662 5.13134 5.19298 5.30932 5.48658 5.54323 5.88530 5.90828 6.02686 6.24194 6.51713 6.61215 6.89983 7.20046 7.41531 7.99340 8.77261 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.001914 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.276284 B =14623.594404 C =15153.862018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.063 0.937 4 O -0.393 6.393 5 C 0.040 3.960 6 C -0.138 4.138 7 C -0.138 4.138 8 H 0.129 0.871 9 C 0.524 3.476 10 O -0.578 6.578 11 N -0.707 5.707 12 C 0.152 3.848 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.534 5.534 16 C 0.054 3.946 17 C 0.450 3.550 18 O -0.605 6.605 19 N -0.593 5.593 20 C -0.325 4.325 21 H 0.054 0.946 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.229 1.229 28 C 0.055 3.945 29 C -0.111 4.111 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.417 0.583 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.102 0.898 48 H 0.043 0.957 49 H 0.082 0.918 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -3.913 -25.643 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.033 3.967 3 H 0.081 0.919 4 O -0.312 6.312 5 C -0.037 4.037 6 C -0.176 4.176 7 C -0.159 4.159 8 H 0.147 0.853 9 C 0.311 3.689 10 O -0.457 6.457 11 N -0.359 5.359 12 C 0.047 3.953 13 C -0.151 4.151 14 C -0.069 4.069 15 N -0.259 5.259 16 C -0.077 4.077 17 C 0.238 3.762 18 O -0.489 6.489 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.184 1.184 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.072 4.072 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.121 0.879 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.235 -4.149 -25.896 31.382 hybrid contribution -0.079 1.204 1.058 1.605 sum 17.156 -2.945 -24.838 30.330 Atomic orbital electron populations 1.21736 0.92574 1.03216 1.02555 1.22864 0.95822 0.94743 0.83281 0.91891 1.88892 1.29219 1.73825 1.39306 1.23354 0.83585 1.01820 0.94894 1.22975 0.94128 1.04962 0.95517 1.22953 1.00775 0.99532 0.92677 0.85310 1.20635 0.76350 0.87322 0.84587 1.90718 1.49155 1.21300 1.84569 1.45941 1.61000 1.17775 1.11142 1.20927 0.94974 0.94907 0.84540 1.21792 0.98058 1.00578 0.94680 1.22009 0.95246 0.95657 0.93992 1.61496 1.04401 1.57041 1.02978 1.21828 0.96538 0.98309 0.91036 1.20954 0.89628 0.83179 0.82443 1.90517 1.46568 1.39891 1.71897 1.42051 1.21343 1.44434 1.15717 1.18981 0.99816 1.28024 0.98633 0.92759 1.26130 0.99922 0.99814 0.95732 1.69810 1.29967 1.45498 1.12403 0.85360 0.79126 0.78477 0.78525 1.18405 1.20067 1.15200 1.22219 0.90733 0.99099 0.95187 1.21807 0.97672 1.01008 0.94378 0.91697 0.91634 0.90902 0.91885 0.87543 0.89820 0.86532 0.74609 0.91030 0.93129 0.91706 0.92356 0.95192 0.85591 0.90737 0.77538 0.91221 0.87946 0.93831 0.89978 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.66 71.98 0.70 -1.86 16 2 C 0.09 1.64 3.02 31.28 0.09 1.74 16 3 H 0.06 1.38 7.53 -2.39 -0.02 1.36 16 4 O -0.39 -7.01 11.22 -148.98 -1.67 -8.69 16 5 C 0.04 0.42 7.70 72.35 0.56 0.97 16 6 C -0.14 -1.07 6.55 31.58 0.21 -0.87 16 7 C -0.14 -1.87 2.95 -10.23 -0.03 -1.90 16 8 H 0.13 1.38 8.06 -2.39 -0.02 1.37 16 9 C 0.52 10.07 7.02 87.66 0.62 10.68 16 10 O -0.58 -16.43 15.35 -3.04 -0.05 -16.47 16 11 N -0.71 -10.71 5.03 -442.13 -2.22 -12.94 16 12 C 0.15 2.98 2.52 45.07 0.11 3.09 16 13 C -0.11 -3.07 5.67 30.65 0.17 -2.89 16 14 C 0.06 1.91 5.11 86.33 0.44 2.35 16 15 N -0.53 -15.33 4.40 -900.93 -3.96 -19.29 16 16 C 0.05 1.62 5.45 85.56 0.47 2.08 16 17 C 0.45 20.22 7.46 87.66 0.65 20.88 16 18 O -0.60 -33.30 13.90 -3.05 -0.04 -33.35 16 19 N -0.59 -27.92 5.09 -306.99 -1.56 -29.48 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.99 5.50 84.92 0.47 -0.52 16 23 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 24 Si 0.97 38.79 27.74 68.60 1.90 40.70 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 28 C 0.06 1.01 5.46 86.32 0.47 1.48 16 29 C -0.11 -1.61 5.57 30.65 0.17 -1.44 16 30 H 0.06 1.31 8.03 -2.39 -0.02 1.29 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.64 7.85 -2.39 -0.02 0.62 16 36 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.42 3.59 8.60 -92.71 -0.80 2.79 16 38 H 0.07 1.65 7.58 -2.39 -0.02 1.64 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.06 2.45 5.78 -2.39 -0.01 2.43 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.13 2.95 7.99 -2.39 -0.02 2.93 16 44 H 0.07 1.91 8.12 -2.38 -0.02 1.89 16 45 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 46 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.10 1.46 8.01 -2.39 -0.02 1.44 16 48 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -83.68 395.77 -1.79 -85.47 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.44 Total: 35.00 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.95 Total: 15.54 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -7.45 Total: -118.20 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -1.76 Total: -58.51 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.70 kcal Total: -83.68 -1.79 -85.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.275 kcal (2) G-P(sol) polarization free energy of solvation -83.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds