Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.06700 * 2 1 4 4 C 1.54000 * 109.91457 * 238.79849 * 2 1 3 5 5 H 1.09002 * 110.31026 * 358.33720 * 4 2 1 6 6 N 1.46504 * 110.31047 * 120.40643 * 4 2 1 7 7 C 1.34775 * 120.00124 * 203.61241 * 6 4 2 8 8 O 1.21286 * 120.00033 * 359.97438 * 7 6 4 9 9 C 1.50695 * 119.99964 * 180.02562 * 7 6 4 10 10 H 1.09000 * 109.47914 * 304.99460 * 9 7 6 11 11 C 1.53090 * 109.48449 * 65.01917 * 9 7 6 12 12 C 1.53173 * 109.16613 * 177.58918 * 11 9 7 13 13 C 1.53173 * 109.03682 * 303.02189 * 12 11 9 14 14 C 1.53088 * 109.16588 * 56.97974 * 13 12 11 15 15 O 1.42898 * 109.42229 * 302.39717 * 14 13 12 16 16 C 1.54598 * 105.22213 * 239.36966 * 4 2 1 17 17 C 1.55092 * 102.84998 * 338.15300 * 16 4 2 18 18 N 1.47897 * 109.92057 * 121.20987 * 2 1 3 19 19 C 1.46906 * 110.99555 * 265.19650 * 18 2 1 20 20 C 1.50706 * 109.46885 * 189.99702 * 19 18 2 21 21 O 1.21292 * 119.99891 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99925 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00117 * 179.97438 * 22 20 19 24 24 H 1.08008 * 119.99494 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00167 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00220 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00079 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46885 * 60.00324 * 27 25 23 29 29 H 1.48495 * 109.47024 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47204 * 300.00338 * 27 25 23 31 31 H 1.08998 * 109.47399 * 181.20145 * 1 2 3 32 32 H 1.08997 * 109.47375 * 301.20209 * 1 2 3 33 33 H 1.09003 * 109.47606 * 61.20670 * 1 2 3 34 34 H 0.97000 * 119.99722 * 23.60811 * 6 4 2 35 35 H 1.08999 * 109.52322 * 297.50017 * 11 9 7 36 36 H 1.09006 * 109.51849 * 57.68442 * 11 9 7 37 37 H 1.09006 * 109.54150 * 62.88812 * 12 11 9 38 38 H 1.09003 * 109.54525 * 183.06181 * 12 11 9 39 39 H 1.09001 * 109.52371 * 176.88646 * 13 12 11 40 40 H 1.09002 * 109.52262 * 297.00731 * 13 12 11 41 41 H 1.09000 * 109.48419 * 62.37103 * 14 13 12 42 42 H 1.08996 * 109.48315 * 182.39466 * 14 13 12 43 43 H 1.09003 * 110.72246 * 96.45403 * 16 4 2 44 44 H 1.09003 * 110.72391 * 219.72762 * 16 4 2 45 45 H 1.09003 * 110.59460 * 278.87433 * 17 16 4 46 46 H 1.08995 * 110.83386 * 155.84768 * 17 16 4 47 47 H 1.08992 * 109.47227 * 309.99424 * 19 18 2 48 48 H 1.09001 * 109.47017 * 69.99781 * 19 18 2 49 49 H 0.97000 * 120.00096 * 0.02562 * 22 20 19 50 50 H 0.97002 * 120.00258 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0545 -0.7501 -1.2385 5 1 1.2227 -1.1400 -1.8251 6 7 2.8815 0.1385 -2.0587 7 6 3.0478 -0.1170 -3.3715 8 8 2.5132 -1.0829 -3.8738 9 6 3.8990 0.7967 -4.2150 10 1 3.5352 1.8201 -4.1229 11 6 5.3518 0.7263 -3.7375 12 6 6.2203 1.6108 -4.6373 13 6 6.0631 1.1522 -6.0903 14 6 4.5829 1.2061 -6.4770 15 8 3.8278 0.3869 -5.5822 16 6 2.9074 -1.9116 -0.6785 17 6 3.2681 -1.4186 0.7470 18 7 2.0339 -0.7205 1.1892 19 6 2.3212 0.2123 2.2872 20 6 3.0561 -0.5142 3.3841 21 8 3.3155 -1.6929 3.2629 22 7 3.4261 0.1460 4.4993 23 6 4.0943 -0.5150 5.4974 24 1 4.3245 -1.5648 5.3898 25 6 4.4752 0.1655 6.6473 26 7 4.1947 1.4426 6.7785 27 14 5.3863 -0.7350 8.0070 28 1 6.6609 -1.2786 7.4730 29 1 5.6772 0.2080 9.1166 30 1 4.5455 -1.8501 8.5120 31 1 -0.3634 -1.0274 0.0215 32 1 -0.3634 0.5324 0.8790 33 1 -0.3634 0.4950 -0.9006 34 1 3.3093 0.9108 -1.6569 35 1 5.4146 1.0805 -2.7086 36 1 5.7033 -0.3041 -3.7911 37 1 5.9007 2.6489 -4.5460 38 1 7.2644 1.5229 -4.3367 39 1 6.6346 1.8110 -6.7441 40 1 6.4301 0.1308 -6.1916 41 1 4.2281 2.2349 -6.4147 42 1 4.4599 0.8404 -7.4964 43 1 2.3238 -2.8311 -0.6322 44 1 3.8064 -2.0540 -1.2782 45 1 4.1097 -0.7268 0.7119 46 1 3.4904 -2.2598 1.4035 47 1 2.9383 1.0306 1.9166 48 1 1.3856 0.6113 2.6791 49 1 3.2190 1.0886 4.5961 50 1 4.4610 1.9178 7.5811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264136757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -113.786734 kcal Electronic energy + Delta-G solvation = -30250.818808 eV Core-core repulsion = 26084.807954 eV Total energy + Delta-G solvation = -4166.010854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.70498 -39.62320 -38.51402 -37.50157 -34.59594 -34.05227 -33.76271 -32.11217 -31.39402 -31.12869 -30.58029 -26.84233 -26.05390 -24.82621 -24.26492 -24.11366 -21.67837 -20.84433 -20.45463 -20.13529 -19.23854 -17.92210 -17.66935 -17.09416 -16.10315 -16.08561 -15.82025 -15.44309 -15.15068 -14.90246 -14.73652 -14.62896 -14.47987 -14.05834 -13.83139 -13.79496 -13.55522 -13.12200 -13.07983 -12.89988 -12.49460 -12.22451 -11.95134 -11.90897 -11.70466 -11.64601 -11.49846 -11.45389 -11.35126 -11.12695 -11.08891 -10.88918 -10.84879 -10.62248 -10.45338 -10.25287 -9.97346 -9.75083 -9.52458 -9.18054 -8.42956 -8.05963 -7.93748 -6.45874 -3.86833 2.41349 2.57153 3.17089 3.23318 3.27540 3.66315 3.84728 4.02545 4.19958 4.27927 4.34218 4.37460 4.47396 4.51034 4.62985 4.71891 4.75614 4.97862 5.00928 5.10940 5.13761 5.21318 5.24460 5.33485 5.34069 5.43122 5.47055 5.53784 5.57904 5.60138 5.64363 5.71773 5.81920 5.84993 5.91906 5.96850 6.02327 6.20035 6.20513 6.31523 6.41012 6.67957 6.72207 7.18698 7.24139 7.31802 7.51296 8.01495 8.04023 8.57045 9.13699 9.49056 10.00746 10.71644 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002283 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.191791 B =12264.212267 C =13264.900810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 H 0.055 0.945 4 C 0.139 3.861 5 H 0.100 0.900 6 N -0.720 5.720 7 C 0.521 3.479 8 O -0.517 6.517 9 C 0.075 3.925 10 H 0.083 0.917 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.159 4.159 14 C 0.059 3.941 15 O -0.354 6.354 16 C -0.134 4.134 17 C 0.039 3.961 18 N -0.488 5.488 19 C 0.038 3.962 20 C 0.441 3.559 21 O -0.580 6.580 22 N -0.561 5.561 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.120 0.880 47 H 0.047 0.953 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 6.099 -22.463 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.055 4.055 3 H 0.073 0.927 4 C 0.034 3.966 5 H 0.118 0.882 6 N -0.374 5.374 7 C 0.305 3.695 8 O -0.391 6.391 9 C 0.014 3.986 10 H 0.100 0.900 11 C -0.185 4.185 12 C -0.159 4.159 13 C -0.197 4.197 14 C -0.017 4.017 15 O -0.272 6.272 16 C -0.173 4.173 17 C -0.088 4.088 18 N -0.213 5.213 19 C -0.094 4.094 20 C 0.227 3.773 21 O -0.464 6.464 22 N -0.197 5.197 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.198 1.198 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.232 0.768 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.138 0.862 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.377 4.205 -22.605 22.996 hybrid contribution 1.389 1.664 0.878 2.338 sum 1.012 5.869 -21.727 22.528 Atomic orbital electron populations 1.21710 0.93162 1.02897 1.01279 1.22704 0.97050 0.96015 0.89686 0.92724 1.21938 0.93677 0.90124 0.90861 0.88247 1.46091 1.52262 1.30465 1.08537 1.20117 0.81271 0.85930 0.82158 1.90733 1.47463 1.28664 1.72203 1.21885 0.95197 0.97462 0.84073 0.89981 1.22155 0.93736 1.02329 1.00281 1.21586 1.00496 0.99198 0.94582 1.22224 0.97502 1.02923 0.97047 1.22665 0.90346 0.94942 0.93780 1.88068 1.70125 1.54305 1.14712 1.23006 0.99831 0.98089 0.96385 1.23526 0.90039 1.00469 0.94745 1.64601 1.28108 1.24443 1.04151 1.22097 1.00379 0.93967 0.92929 1.19686 0.85095 0.88134 0.84391 1.90444 1.60036 1.16018 1.79922 1.41842 1.50408 1.12195 1.15287 1.19650 1.31710 0.96390 0.95164 0.87923 1.25264 0.98098 0.95709 0.98813 1.69601 1.47115 1.08279 1.29275 0.85918 0.79769 0.78798 0.79745 1.19917 1.20971 1.19830 0.91469 0.92148 0.92669 0.76760 0.90106 0.90194 0.91478 0.90782 0.90607 0.90752 0.93002 0.88324 0.89921 0.91089 0.94803 0.86177 0.93532 0.89195 0.77475 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.32 37.15 0.35 -1.14 16 2 C 0.05 0.67 2.86 -66.64 -0.19 0.48 16 3 H 0.05 0.61 7.04 -51.93 -0.37 0.24 16 4 C 0.14 1.70 2.95 -66.57 -0.20 1.50 16 5 H 0.10 1.32 7.14 -51.93 -0.37 0.95 16 6 N -0.72 -7.48 5.03 -52.48 -0.26 -7.75 16 7 C 0.52 6.34 7.18 -10.99 -0.08 6.26 16 8 O -0.52 -8.57 16.18 -14.30 -0.23 -8.81 16 9 C 0.08 0.71 3.05 -27.84 -0.09 0.62 16 10 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.15 -1.13 5.37 -26.60 -0.14 -1.27 16 12 C -0.12 -0.73 6.03 -26.55 -0.16 -0.89 16 13 C -0.16 -0.97 6.14 -26.60 -0.16 -1.13 16 14 C 0.06 0.43 6.84 37.20 0.25 0.68 16 15 O -0.35 -3.98 9.94 -55.09 -0.55 -4.53 16 16 C -0.13 -1.85 6.80 -24.79 -0.17 -2.02 16 17 C 0.04 0.64 5.31 -1.81 -0.01 0.63 16 18 N -0.49 -7.81 4.89 -223.90 -1.10 -8.90 16 19 C 0.04 0.65 5.52 -4.97 -0.03 0.62 16 20 C 0.44 10.05 7.49 -10.98 -0.08 9.96 16 21 O -0.58 -14.95 13.09 5.55 0.07 -14.88 16 22 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 23 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 24 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 27 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 3.20 8.16 -40.82 -0.33 2.87 16 35 H 0.08 0.52 7.99 -51.93 -0.41 0.11 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 45 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 46 H 0.12 2.40 5.96 -51.93 -0.31 2.09 16 47 H 0.05 0.71 7.81 -51.93 -0.41 0.31 16 48 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -33.04 397.77 -9.74 -42.78 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.36 Total: 11.10 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.95 Total: 6.51 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.69 Total: -53.89 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.71 Total: -28.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.04 -9.74 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264136757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.005 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds